Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A3 F108 I0 R1 | 42 | 64.6 | 1127642 | 98.1% | 1106216 | 264.4 |
Breseq alignment
| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,326,089 | T→G | 13.4% | intergenic (‑347/+311) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,326,089 | 0 | T | G | 13.4% | 108.7 / 10.8 | 51 | intergenic (‑347/+311) | yjdN/yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| Reads supporting (aligned to +/- strand): ref base T (20/23); new base G (3/4); total (24/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGA > NC_000913/4325802‑4326367 | agGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCATTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATg > 1:460470/1‑289 (MQ=39) cggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTg > 1:102169/1‑289 (MQ=38) aaacgggcaggcgtcgcgtcAGCAAGTCGGAACGGTTGCCGGTGGCGGGCTAAACGCCTGATCCGGCGAGCGGAGGGTGCGGGAATTTGTAGGCCTGTTAAGAAGGGCAAGCGTCGCATCAGGCAGTCGGAACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTg < 2:252459/279‑1 (MQ=11) gagcgaggggtgcatgtaGGCAGTGGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTa < 2:268815/271‑1 (MQ=255) gcgcgggggggggcagaagCAGTGGGAACTGTTGCGGGATGCGGCGTAAAGCACTTATCGGGCCTAGGGAGAGTGCGGGAATTGGGAGGCCGGATACGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAg < 2:302221/270‑1 (MQ=11) gcgAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGAGGGTGCGGGAATTTGTAGGc < 1:226201/288‑1 (MQ=25) tCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACCCCTTATCCGGCCT‑CCGGAGGGTGCGGGAAGTTGTAGGACTGATAAg > 2:317390/1‑289 (MQ=12) aGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑g < 2:356874/289‑1 (MQ=37) tCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGGAGGGTGAGGGAATTTGTAGGAATGATAAGAAGAGAAAGAGTAGAATAAGGAAGTAGGAAAAATTGAAGGATGAGGAGTAAAAGAATTATAAGGAATAAGGAGGGTGAGGGAATTTGTAGGAATGATAAGAAGAGAAAGAGTAGAATAAGGAAGTAGGAAAAGTTGAGGGATGAGGAGTAAAAGAATTATAAGGAAT‑AAGGATGGTGAGGGAATTTGTAGGAATGATAAGaagagaaagagt < 1:50371/288‑12 (MQ=9) ggCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATCGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCg < 1:87522/288‑1 (MQ=37) ggATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAACTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCTGATGCGGGGTAAACGCCCTCTACCGCCTCACGG‑TGGTTGGGGGGTGTGGAGGCTTGATTAGAAgcgccatcgcggcctgcggacgttg > 2:520633/1‑268 (MQ=11) ggggcgTAAAGGGCGTAGCCGGCGTAGGGAGGGGGCGGGAAGTGGTAGGCCTGATAAGACGGCGAAGCGCAGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCa < 2:357240/286‑1 (MQ=11) gcggcgTAAGCGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCa < 1:102346/288‑1 (MQ=37) cggcgTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCATTCTCCGGCCT‑CCCGATGGTGCGGGCTTTTGTATGTCTGATAAACAGCCCAACC‑CACGCATCAGGcgcgtggc > 2:371099/1‑279 (MQ=11) ttATCCGGCCTACGGAGGGGGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATgcg < 1:520633/289‑1 (MQ=38) gCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGAGGGATCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCTGGCAAGTTGCGCTGTTGCCGGACGCGGCGtgat > 2:195312/1‑286 (MQ=11) gggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGTCGTCAATGCCTTATCCGGCCT‑ACGGCCGGTGCGGGCATTCGTCGGCGTGAGAACACGCGCACCCGGCCGCCCCAGCCA‑CTGGCCCTATTGCCGGATGTGGCGtcacagcatttgcaggcc > 2:422841/1‑271 (MQ=11) aTTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCATAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACg < 1:422687/288‑1 (MQ=38) tttGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGACTTTGTTGGCCTGATAAGACGCCCAAGC‑CTCGCTCCCGGCAGTTGGCACCCTTGTCGGGTTCGGCGTCAGCCCCTTCACCGGGCCACGGa > 2:258018/1‑289 (MQ=11) aGGCCTGATAAGACGCGCCGGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTg < 1:194302/289‑1 (MQ=38) ccgcAAGCGTCGCATCAGGGAGGCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGGAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAg < 2:194347/287‑1 (MQ=255) ggCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTCGGTCTGATAAGACGCCCACGC‑GTCGCATCCGGCAGTTGGCACTGTTGCCGGATGCGGCGTGAATGTCTTATCCCGCCTACGCACGGTTCGGGGATTTGTAGGCCCGATAAGACccgcca > 1:444771/1‑287 (MQ=11) gtcgggacggtggCCGGATGGGGCGTGAAAGCGTTATCCGGGCTACGGAGGGTGCGGGAAGTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGCTGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCg < 2:102169/276‑1 (MQ=11) tCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTAt > 1:241548/1‑236 (MQ=38) tCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTAt < 2:241548/236‑1 (MQ=38) aCCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCCCATCACGCAGCTGGCACTGTTGCCGGATGCGGCGTTACCGCCTTGACCTGCCTACGGAGGGTGCTGGAAGTTGTAGGCCTGATatgcaccccactcgtcgcct > 2:470965/1‑269 (MQ=11) tGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTATGCCTGATAAGACGGGCCAGCCTCGCCTCACGc > 2:81255/1‑288 (MQ=255) gcgTAGACGCATTATCCGGCCTACGGAGGGGGCGGGAAGTTGTAGGCCTGATAAGACGCGCAAGCGTGGGATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCg < 2:119651/288‑1 (MQ=255) cGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAg < 1:51156/152‑1 (MQ=31) cGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCg < 1:345287/243‑1 (MQ=37) cGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCg > 2:345287/1‑243 (MQ=37) ggTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATc < 1:277664/145‑1 (MQ=32) ggTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGCGCGGGAATTTGTACGCCCTATCATACCCCCCAGCGACGCCTCCGGGCTGCGGCACCTTTGCCGGACACCGGCGTCAACGCtttt > 2:50613/1‑286 (MQ=11) tGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCATGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTCCGGAGGGTGGCGGAATTTGTAGGCTTGAAACAACGCGCAAGAGCCGCCTCAGGGCGTCGTCACCCTTACCGGA‑CGCGGCGTCACCGCCttccacg > 2:363932/1‑283 (MQ=11) gggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCa > 2:51156/1‑152 (MQ=35) tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATc > 2:64739/1‑133 (MQ=32) tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGA‑Tgc < 1:387304/259‑1 (MQ=39) aTAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGa > 1:542313/1‑87 (MQ=33) aTAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCCTCAGGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTAAACg > 2:387304/1‑259 (MQ=38) aTAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAAt > 1:104018/1‑289 (MQ=38) cAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAg < 2:491727/85‑1 (MQ=33) ggCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTAAACGCCTTATCCGGCCTACGGa < 2:255955/253‑1 (MQ=35) ggCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTAAACGCCTTATCCGGCCTACGGa > 1:255955/1‑253 (MQ=35) gCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTaa > 1:536114/1‑231 (MQ=18) gCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTaa < 2:536114/231‑1 (MQ=18) ggcgTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCACGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTCAACGCCTTATCCGGCCTACGGCGGGTGCTGCAATTTGTAGGCCTGATAAACCGCGCACGCGTCGCCTCTGGCATCGAGCAcc > 2:235483/1‑288 (MQ=11) cgTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCCGGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTCAACGCCGTATCCGGCCCACGGAGGGTGCGGGCACGTTTCGGCATGATAAGACGAGCAAGCGgcgccgcgagcgtctagccccggt > 2:298199/1‑269 (MQ=11) aaCGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCg < 1:422841/289‑1 (MQ=39) ggCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GGCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGa < 1:282733/289‑1 (MQ=255) ggCCT‑ACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGt < 2:232945/163‑1 (MQ=18) ggCCT‑ACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGa < 1:317390/289‑1 (MQ=18) | AGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT‑ACGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGC‑GTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGA‑TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGA > NC_000913/4325802‑4326367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |