Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F17 I0 R1
|
155 |
84.1 |
1797446 |
90.9% |
1633878 |
230.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,240,710 |
A→G |
10.1% |
H454H (CAT→CAC) |
cvrA ← |
putative cation/proton antiporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,240,710 | 0 | A | G | 10.1%
| 195.3
/ 2.2
| 73 | H454H (CAT→CAC) | cvrA | putative cation/proton antiporter |
| Reads supporting (aligned to +/- strand): ref base A (30/32); new base G (3/5); total (36/37) |
| Fisher's exact test for biased strand distribution p-value = 7.14e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 |
TCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAA > NC_000913/1240480‑1240940
|
tcccccAGCGTTTGCTGCTTAACCCGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATAGTTGGCGCGGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCaa < 2:34371/236‑1 (MQ=255)
tCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCaa < 2:602600/239‑1 (MQ=255)
tgctTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGaaa < 2:190378/239‑1 (MQ=255)
ttataagagacccgtgtcccGTTTGCCCGGGCATATATCAGCGAAACATCAGGAATTTTGGGGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAg < 1:118407/222‑1 (MQ=255)
aTCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACCTCGCCTTCGCGCAGTCGGGGGCTGCCGGTAGGATGAAGCAACTGGTTATCACCAAACAGt > 2:700474/1‑238 (MQ=255)
agtcgcGCCCGTCTTCCAGGCCATATACCAGCGCAACATCAGCATATTTGGCGGTGGCGTCGAGAATGAAGTCACCAATGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATa < 2:102898/234‑1 (MQ=255)
ctcGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAAAAGTGCCGCAATCcgc > 2:70816/1‑239 (MQ=255)
tcGCCCGTCTTCCAGGCCATATAACAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATAcgcg < 2:748244/239‑1 (MQ=255)
tgCCCGTCTTCCAGGACATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGt < 2:673993/238‑1 (MQ=255)
ccccccTCTTCCCGGCCATTTATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCCCCAAAGAAGCGTTGAACCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGt < 1:886168/237‑1 (MQ=255)
cGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGt < 2:489954/239‑1 (MQ=255)
cGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATAcccgcgcct > 2:793234/1‑234 (MQ=255)
tCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGATCGCCGGAAGATCGCGTTCCCGACCAATTACACCCAA‑CACATCCCCTTCTGCAAGACGGGTGCTGCCGGTAAGGTGACGCAACAGGTTTGCACAAAACATAGCCGCAAAAACCGTCCCttt > 1:673993/1‑239 (MQ=255)
tCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACCCGCCTCttt > 2:701147/1‑239 (MQ=255)
tCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGAAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACACGTCTCttt > 2:308027/1‑239 (MQ=255)
tCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCCTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGGAGGATGCAGAAACTGGTTATCACGAAAAAGGACCGCAAAACGCGGCCCttt > 1:316776/1‑239 (MQ=255)
tCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGGTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑Tgg < 2:299875/239‑1 (MQ=255)
tCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGCCCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑Tgg < 2:408215/239‑1 (MQ=255)
tCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGGTATCACGAAAAAGTGCCGCAATa > 2:118407/1‑225 (MQ=255)
ccAGGCCATATAACAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACGCACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGc < 2:93037/239‑1 (MQ=255)
cAGGCCATATTACAGCGCAACATCAGCATATTTGGGGGTGGCTTCGAGAATGAAGTCCCCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCa < 1:37660/239‑1 (MQ=255)
atatCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGGTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCaaa > 2:172120/1‑239 (MQ=255)
atCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGCAGGATGAAGCAACGGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAAt > 2:662938/1‑238 (MQ=255)
aGCGCAACCACAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATcgcg < 2:373099/239‑1 (MQ=255)
aGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCACTCGGGGGCTGCCGGTAGGATGAAACAAATGGGTATCACGAAAAAGGGCCGCAATACACGCACCTTT‑AGGCATATGAAAAAcgcc > 1:389218/1‑238 (MQ=255)
aGCGCAACATCAACATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCCGTCGGGGGCGGCCGGTGGGGTGAAGCAACCGGTTTTAACGACACAGTGCCGCAAAACGCCGCTCATT‑TTGCATATGAAAAgcgc > 1:391214/1‑238 (MQ=255)
cgcAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGGCCAATTACACACAA‑AACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGCTGAAGCAACTGGTTTTCAATAAACATGACCGTAAAACGCGTACCTTT‑TGGAATATGGaaaaacaaca > 1:382026/1‑232 (MQ=255)
cgcAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCCAATCgcgcc > 2:160915/1‑238 (MQ=255)
cgcAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCCCTTT‑TGGCATATGCAAATCGCGCa > 2:258685/1‑239 (MQ=255)
cgcAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCCGCCGGTAGGATGAAACAACTGGTTAATCCGGAACAATGCCGCAATACGCGCCCCTTT‑TGGCCTATGCAAAAcgccag > 1:850964/1‑236 (MQ=255)
cgcAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGCCGGGGGCTGCCGGTAGGCCGAAGCCACTGGTTATCACGAAACCATGCCGCAATACGCGCCTCTTT‑TGGCATATGCAAATcaccca > 2:482647/1‑234 (MQ=255)
cAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCCATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCCCGAAACAGTGCCCGAAAACACGGCTCTTT‑TGGCATATGAAAATccagaag > 1:772660/1‑232 (MQ=255)
cAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATAACGAAACAATTCCGCAATACTCGTCTCTTT‑TGGCATATGCAAAtactgcag > 2:344575/1‑231 (MQ=255)
aacccAGCATATTTGGGGCTGGCTTCGGGAATGAAGTCACCAAAGAAGCGTTTAACCAGGGGGACCGGGGGCCAATGGCTGAACAGGTTTCCGAGGCCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGc < 1:136184/235‑1 (MQ=255)
cATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGGTGGAGCAACTGGTTATCCCGAAACAATGCCGCAAAACGCGGCTCATT‑TGGAAAATGCAAATAGCGCaaggcc > 1:295340/1‑234 (MQ=255)
cATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTa > 2:585115/1‑182 (MQ=255)
cATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTa < 1:585115/182‑1 (MQ=255)
cATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGAACAATTACACACAA‑CACATCGCCTTACCGCATCCGGGTGCTGCCGGTAGGCAGCAGCAACTGGTTATAACGAAAAAGGACCGCAATACACGCCTCTTT‑TGGCATATGCAAATCGCACAGGGcc > 1:566832/1‑239 (MQ=255)
ctCAGCATATTTGGCGGTGGCCTAGAGAATGAAGCCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCcg < 2:707112/238‑1 (MQ=255)
aTCAGGTTATTTGGGGTCGGCTTGGGAAATTAAGGCCACAAAGAAGGTTGGAACCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCCCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCcg < 1:129977/239‑1 (MQ=255)
aTCAGCATATTTGGGGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCcg < 2:379463/239‑1 (MQ=255)
gCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGGGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGGGCCGCAATACGCGTCTCTTT‑TGGCATATGAAAATCGCGCAGTGCCgcgc > 2:819533/1‑238 (MQ=255)
atatTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGGGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCa < 2:528154/239‑1 (MQ=255)
ttttGGGCCTGGCTGCGAGAATGAAGGCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACg < 1:701147/238‑1 (MQ=255)
tGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAACGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCAc < 2:391214/239‑1 (MQ=255)
gcTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGGGCCGCGCCCACGCACCAtt > 2:741532/1‑239 (MQ=255)
cGAGAATGAAGTCACCAAAGAAGCTTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCa < 2:389218/239‑1 (MQ=255)
cGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGGTAAACCAACTGCt > 2:723857/1‑238 (MQ=255)
cGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCCCAATACGCGGCTCTTT‑TGGCATATTCAAATCGCGCAGTGCCGCCCCCACCCCCCCTTTATCGGCCCCCAATTGTAaaaaaaaccacc > 1:482883/1‑234 (MQ=255)
gcgcGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGGGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAATGCCGCGCCCAGGCACCATTTATCGGCCCTCCATTGATTAACAAACTGCCCCCCCGGAttt > 2:625045/1‑239 (MQ=255)
gccctcggggtcgccTGGCGTAACAGTTGTCCGGGCGCCAGAAGATCGGTGTCCCGAGCAATTACACAAAA‑ACCACCCCCTGCGCGGCGTCGGGTGCTGCCGGTAGGGTGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTGTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTc < 1:308027/225‑1 (MQ=255)
gccccgcggcgCATGGTTGAACGGTTTCCCGGGGCCCGGAAGTACGCGTTCCCGACCAATTACACACAA‑CACATCTCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTAACACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCg < 1:798616/234‑1 (MQ=255)
gACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGAGCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCg < 2:316776/239‑1 (MQ=255)
aCCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCgg > 2:242617/1‑239 (MQ=255)
cggccACTGGCTGAACAGTTTACCGGGCCGCGGAAGATCGCGGTCCCAGCCAATTACCCCCAA‑CACATCGGCTTCGGGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGa < 2:343092/238‑1 (MQ=255)
tcaCAGTTTACCGAGCGCCGGAAGATCGCTTTCCCGACCAATTACACACAA‑CCCATCGCCTTCGCGCAGGCGGGTGCTGCCGGTAGGGTGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCa < 2:542908/236‑1 (MQ=255)
gaaccttttACCGGGCTCGGGAGGATCGGGTTCCGGACCAATTACCCCCAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCa < 1:172120/232‑1 (MQ=255)
tgttACCGCGCGCCCGCAGACCGGGTCCCCGCCCAAATACACACAATTCCATC‑CCTTGGCGCAGTCGGGGGCTGCAGGTAGGGTGAAGCAACTGGTTATCCCGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGt < 1:625045/237‑1 (MQ=255)
tACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGCTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCCCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCACTTGGTAAACAAACTCCCCCCACGGATTTTCCGGAGGAATATCCAGGCCAAcccaaaac > 1:540659/1‑232 (MQ=255)
gcCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACCCGTGACACCggcc > 2:243962/1‑236 (MQ=255)
aggttctgtcccccACAAATTACACACAA‑CTCATCCCCCTAGGGCAGTCTGGTTCTTGCGGGAGGATGAAGCAACTGGTTATCGCGAAACAGTGCCGCAATACGCGTATCTTT‑TGGCATAATCAGATCGCGCATGGCCGCTCCCACGCACCATTTATCGGCACTCAAGTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCa < 1:290040/228‑1 (MQ=255)
aGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGGCGGGTGCTGCCGGTAGGATGAAGCAACTGGGTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCa < 2:382026/238‑1 (MQ=255)
cgcgTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCCCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCCCCCACGGCATTTCCGAAGGAATTTCCAGGCCAACAGGGGAACCCGAACGTCCCCCGGGc > 1:763968/1‑239 (MQ=255)
ggTTCCCCACCAATTCCCCACAA‑CCCGTCCCCTTGGCGCTGTTGGTGGGTTCCGGTAGGGTGAAGCAACTGGTTAACCCGAAACAGTGCCGCAATACGCGTCTTTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTGGCgg < 1:662938/238‑1 (MQ=255)
tCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCCCCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACCCTGGCCACCGGACGTCCCACTGGCggga > 2:422610/1‑236 (MQ=255)
aa‑cacaTCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACTTCCCACTGGCGGAACCACCACTTTGGCcttttt > 1:276197/1‑239 (MQ=255)
cacaTCGCCTTCGCGCAGGCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATAGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCCGGCCACCGCGTGACACCGGCGCGCCCCCTGGCGGGACCACACCTTTGGCTTTTTTa > 1:411898/1‑238 (MQ=255)
cGCCTTCCCGCAGTGGGGTGCTGCCGGTAGGAGGAAGCAACTGGTTATCACGAAACAGTGCCGCAATCCGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAgccgcc < 1:741532/239‑1 (MQ=255)
ttcgggaggcGGGGGCTGGCGGTAGGGAGAAGCAAATGGTGAAGCAGAAAAAGGGCCGCAATACGGGT‑TCTTTGTGGCAGAGGCAAAGCGCGCAGGTCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACga < 1:160915/230‑1 (MQ=255)
gcgcAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACgaga < 2:566832/239‑1 (MQ=255)
gTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGCAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCACTTGATAAACAAACTGCTCCCACGGCTTTTCCGGATGAATATCCAGGCCAACGCGTGATACACGACGTCCCCCTGGCAGAACCACCCCTTTTGCCTTTTTAGccccccccaaacatgaa > 1:8469/1‑228 (MQ=255)
gtccGGTAGGATGAAGCAACTGGTTACCACGAAAACGGGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAAGCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGc < 2:864769/237‑1 (MQ=255)
ccGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTACACGCCCACGAGAGTGATGTTCCCTGCaa > 2:188381/1‑239 (MQ=255)
|
TCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCTGGCTTCGAGAATGAAGTCACCAAAGAAGCGTTGATCCAGCGCGACCGGCGGCGACTGGCTGAACAGTTTACCGAGCGCCGGAAGATCGCGTTCCCGACCAATTACACACAA‑CACATCGCCTTCGCGCAGTCGGGTGCTGCCGGTAGGATGAAGCAACTGGTTATCACGAAACAGTGCCGCAATACGCGTCTCTTT‑TGGCATATGCAAATCGCGCAGTGCCGCGCCCACGCACCATTTATCGGCACTCAATTGATAAACAAACTGCTCCCACGGATTTTCCGGATGAATATCCAGGCCAACGCGTGACACCGGACGTCCCACTGGCGGAACCACCACTTTGGCTTTTTTAGCCGCCCACGAGAGTGATGTTCCCTGCAA > NC_000913/1240480‑1240940
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
