Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F17 I0 R1 155 84.1 1797446 90.9% 1633878 230.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,336,952 A→C 21.9% G27G (GGT→GGG)  adiC ← arginine:agmatine antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,336,9520AC21.9% 171.5 / 13.1 83G27G (GGT→GGG) adiCarginine:agmatine antiporter
Reads supporting (aligned to +/- strand):  ref base A (41/19);  new base C (2/20);  total (44/39)
Fisher's exact test for biased strand distribution p-value = 2.11e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAATCAGGCGACAGTGCGTTCT  >  NC_000913/4336717‑4337187
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                            
ccccgtgggagttgttcgcGATCCGGCGGGCCCGGCAGGGGGGGAGGTTGGTT‑TAAAAACCGAGAAGGGGGCCAAAGCG‑GGGGGGGGCGTAAGCTAAAGAC‑CCACAAGGACTGGGGTCAGGGACCGACTTTTTGGCGTATCCCAGCGAGGG‑CCCGAGTG‑CACCAATAATCGTCACCAACCATCCATAAAGGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCt                                                                                                                                                                                                                                           <  1:95974/221‑1 (MQ=255)
    caTGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGGG‑CACCGATAATCGGCACCAACCATCCATAAATGG‑CAATCCCGCCAGGAGAGGCCAGGGTTGCAGGTA‑ACAG‑AAAAACACCTGAc                                                                                                                                                                                                                                        >  2:348237/1‑238 (MQ=255)
       ggCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTTGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAAACATCCATAAATGG‑CAATCCCGCCAGTAAAGGCCAGGCTTTCAGGGA‑AAAG‑AAAAACACCTGAccccc                                                                                                                                                                                                                                    >  2:329967/1‑238 (MQ=255)
              ttGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGGAAGAA‑ACAACAGGACTTGGTTCGCGGAACGACCTTTTGGCGGAAACCAACTAAGG‑CCCCCGTG‑CAGCGATAATCAGCAACAACCATCCATAAAAGA‑CAAACCCCCCCACAGAGGCCCAGCTGGCCAGGA‑AAAA‑AAAAACCCCAGCCCCCataaaaat                                                                                                                                                                                                                             >  1:654909/1‑235 (MQ=255)
                    aTCCAGCAGGCCAGCCAGTAGGGGACGTTGGTT‑TGATAACCGAGAACCGGGCCAAAGCA‑GCGGCGGGCGTAAGGGTAAGAA‑CCCCCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGa                                                                                                                                                                                                                       <  2:713290/239‑1 (MQ=255)
                          cagGCCAGCCAGTAGAGGACGTTGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCCTAATATTCCCCGccacca                                                                                                                                                                                                                  >  2:204820/1‑238 (MQ=255)
                           gggcccacgctgggggggtgttggttgTGAACACCGAG‑AACGGGCCAAAGGAGGCGGGGGGGGAAAG‑GGAAGAACCCACGGGGTGTGGGGTCGAGAAACGACATTTGGGCGTATCCCAT‑GAGGGCCCCCAGTG‑CACCAATAACCGACCCCAACCATCAAAAAATGG‑CAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTG‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCAt                                                                                                                                                                                                                 <  1:287859/220‑1 (MQ=255)
                           agGCCAGCCAGTAGAGGACGTTGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCCGTAGAGGCCAGGATTTCAGGTA‑ACAG‑AAAAACACCTGCCCCCATAAAATTCCCCGACACCATc                                                                                                                                                                                                                >  2:404907/1‑239 (MQ=255)
                               cagccagTAGAGGACGTTGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCCGTAGAGGCCAGATTTGCCGGGA‑ACAG‑AAAAACACCTGACCCCCTAATATTCCCCGACACCCTCAggg                                                                                                                                                                                                            >  2:382324/1‑239 (MQ=255)
                               cagccagTAGAGGACGTTGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAAAG‑CCCCCGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCCCCCGCAAAGACCAGGTTTGCAGGGA‑ACAG‑AAAAAAAACTTACCCCAAAAAATTcaccagaccccacaagg                                                                                                                                                                                                            >  1:880271/1‑226 (MQ=255)
                                       aggggACGTTGGTT‑TGAAAACCGAGAAGCGGGCAAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACTTTTTGGCGTATCCCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCCCCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑Cg                                                                                                                                                                                                      <  2:263308/233‑1 (MQ=255)
                                       agagGACGTTGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAAAATTCCCCGACACCATCAGGGTGA‑Cgggg                                                                                                                                                                                                   >  2:47268/1‑239 (MQ=255)
                                           gACGTTGGTT‑TGATAACCGAGAAACGGGCCACAGCA‑GCGGGGGGGGTAAACGTAAGAA‑CCACCCGGACTTGTGTCGAGGAACGACATTTTGGCGCATACCATAGGGAG‑CCCCAATG‑CACCGATAATAGTCACCAACGCTCCATAAATGG‑AAGTCCCGCCCGTAGAGGCCCGGGTGGACGGAACCCAG‑AAAAAC‑CATGGGCCCATAATATTCCCAGACAGCaaccgagaggaggggtgta                                                                                                                                                                                                >  1:305614/1‑221 (MQ=255)
                                              gTTGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGGTAATCGTCCCCAACCATCCATAAAAGG‑CCATCCCCCCAGTAGAGGCCAGGTTTGCAGGGA‑ACAGAAAAAACCCCTAACCCCA‑AATATTTCCCGACACCACCAGGGGGACCGGGGATTaa                                                                                                                                                                                              >  1:400227/1‑238 (MQ=255)
                                                tGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGAA‑ACAG‑AAAAAAACCTGACCCCATAATATTCCCCGAACCCATCAGGGGGA‑CGGGGATTAAGccc                                                                                                                                                                                          >  2:232845/1‑239 (MQ=255)
                                                tGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACGTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTTCAGGGA‑ACAG‑AAAAACACCTGCCCCCCTAAAATTCCCCGAAACAATAAGGGGGA‑AGGGGATAAAAccc                                                                                                                                                                                          >  1:432373/1‑239 (MQ=255)
                                                      tGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAAAG‑CCCCAGTG‑CACCGGTAATCGTCACCAACCATCCATAAATGG‑CAATCCCCCCACTAGAGGCCAGGTTTGCAGGGA‑ACAA‑AAAAACACCTCACCCCAAAATATTCCCCGCCACCATCAGGGGAA‑CGGGGAGTAAACCCACttt                                                                                                                                                                                     >  1:883174/1‑239 (MQ=255)
                                                             cGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCCTAATATTCCCCGACCCCATCAGGGGGA‑CGGGGATTAAACCCACttttgtggca                                                                                                                                                                              >  1:100297/1‑232 (MQ=255)
                                                             cGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGagca                                                                                                                                                                              >  2:626282/1‑239 (MQ=255)
                                                              gagaAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGGGA‑CGGGGATTAAACCCCCTTTGTGagcct                                                                                                                                                                             >  2:231020/1‑237 (MQ=255)
                                                                           aaGCA‑GGGGCGGGCGAAAGCGTAAGAC‑CCCCCGGGATTTGGGTCGAGGAACGACATTTTGGCTTATACCATCGAGAG‑CCCCAGTC‑CACCGATAACCGTCACCACACATCAAAAAAGGC‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGa                                                                                                                                                                <  2:608389/239‑1 (MQ=255)
                                                                                aggggggggcgTAACCGTAAGAC‑CCACAGGGTCGTGGGTGGAGGACCGACATTTTGGCGTATCCCATCGAGGC‑CCCCAGGG‑CACCGATAATCGTCACCAACCACCAATAAATGC‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACa                                                                                                                                                              <  2:344500/231‑1 (MQ=255)
                                                                                       ggcgTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTaaa                                                                                                                                                      >  2:779965/1‑238 (MQ=255)
                                                                                                  aagAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCGCCGAAga                                                                                                                                          >  2:249850/1‑238 (MQ=255)
                                                                                                  aacca‑ccacgAGGACTGGGTCCGAGGAACGATTTTTGGGGTTATTCCATCGAGAG‑CCCCATTA‑CACCGAGAATCGACCCCAAACATCAATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACCCCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAgg                                                                                                                                          <  2:654909/235‑1 (MQ=255)
                                                                                                          accaGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACAAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGCCCAGGTATGCAGTTA‑TGAG‑AAAAACAACTGACCCCCTAATATTTCCCGACACCATCAGGGTGA‑CGGGGATCAAGCCCACTTTCTGCGCATCAGCGTCCGAAGACCTAATAAAACTCCTCCAAAgacaaa                                                                                                                                      >  1:62170/1‑231 (MQ=255)
                                                                                                           ccaGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGGGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTc                                                                                                                                  >  2:404362/1‑239 (MQ=255)
                                                                                                           ccaGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAAGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGCTTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTc                                                                                                                                  >  2:311016/1‑239 (MQ=255)
                                                                                                                         gAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAAtt                                                                                                                     >  2:789492/1‑238 (MQ=255)
                                                                                                                          aGGCACGACTTTTTGGCGTATCCAATCGAGAG‑CCCC‑GTGCCCCCGATAATCGTCACCAACCAGCCATAAAGGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTa                                                                                                                    <  2:84868/238‑1 (MQ=255)
                                                                                                                          aGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTAc                                                                                                                   >  2:640546/1‑239 (MQ=255)
                                                                                                                          aGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAAACATAATTAAACCCCTGCGAAGGGGAGCTTCGTGACAAAAAATAAc                                                                                                                   >  1:519276/1‑239 (MQ=255)
                                                                                                                            gaccGACTTTTGGGCATATACCATCGAGAG‑CCCGAGCG‑CACGGATAATCGTCCCCAACCACCCAAAAATGG‑CAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACg                                                                                                                  <  2:519276/235‑1 (MQ=255)
                                                                                                                                            tataCCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCt                                                                                                   >  2:804804/1‑237 (MQ=255)
                                                                                                                                             atcccATCGGGAG‑CCCGAGTG‑CACCGATAATCGTCCCCAACCATCCATAAATGG‑CAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCa                                                                                                <  2:883174/236‑1 (MQ=255)
                                                                                                                                                   tgggaagaccccATGG‑CACGAATAAACGTCAACAACCATCGATAAATGG‑CAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGa                                                                                           <  2:365163/231‑1 (MQ=255)
                                                                                                                                                   tCGAGAG‑CCCCAGTG‑CACCGCTAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTCCGAAGGCGGACTTCGGGACAATAAATTACGGAATAACAAAAGCCTGCATTCgct                                                                                          >  1:165566/1‑237 (MQ=255)
                                                                                                                                                   tCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCACACGAAGACATATTTAAACTCCTGCGAAGCCGAGCTCCGCGACAAAAAATTACGTCATATCAAACCCCTTCATTCGac                                                                                          >  1:737706/1‑238 (MQ=255)
                                                                                                                                                      gaacacccaAGTG‑CCCCGATAACCGACCCCAACCATCCA‑AAATGGCCAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGa                                                                                           <  2:100297/231‑1 (MQ=255)
                                                                                                                                                      agag‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGAGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGGGACAATAAATTACGTCATATAAAACGCCTGCATTCGAAAGt                                                                                       >  1:825083/1‑239 (MQ=255)
                                                                                                                                                        ag‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGGGACAATAAATTACGTCATATCATACGCCTGCATTCAATAGTTg                                                                                     >  2:614420/1‑239 (MQ=255)
                                                                                                                                                        ag‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGCTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCAAGCTTCGTGACAATAAATTACGTCAAATCATAACCCTGCATTCGAGAGTTg                                                                                     >  2:248091/1‑239 (MQ=255)
                                                                                                                                                           ccccAGTG‑AACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCGGCCAGTAGAGACCAGTGTTGCAGGTA‑ACCG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGAGCGA‑CGGGGATTAAGCCCCCTTGGTGAGCATCAGCATACGAAGACATAATTAAACTCCTGCGAAGGCGAGCTACGAGACAATAAATTACGTCATATCATACCCCCGCATTCGAGAGGTGaa                                                                                   >  1:707050/1‑239 (MQ=255)
                                                                                                                                                                gTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTGGAattatt                                                                              >  2:189721/1‑239 (MQ=255)
                                                                                                                                                                    cACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGCCAAATCATACGCCTGCATTCGATAGTTGAATTATtctc                                                                           >  2:285995/1‑239 (MQ=255)
                                                                                                                                                                      acaaTACTCCTCACCAA‑CAGCCATAAAAGGCCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGa                                                                         <  2:436378/236‑1 (MQ=255)
                                                                                                                                                                       ggatacgcGTCCCCAACCATCAAAAAAGGA‑CAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGAc                                                                        <  2:781683/232‑1 (MQ=255)
                                                                                                                                                                         aTAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAACCACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTTTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGCGCTTCGTGACAATAAATTACGTCATATCAAACGCCTGCATTTGATAGTTGAATTATTATCAACCg                                                                      >  1:320419/1‑239 (MQ=255)
                                                                                                                                                                         aTAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCCTACGCCTGCATTCGTTAGTTGAATTATTTTCGACCg                                                                      >  2:569294/1‑239 (MQ=255)
                                                                                                                                                                         aTAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCg                                                                      >  2:652141/1‑239 (MQ=255)
                                                                                                                                                                            cactgcatcaaccaacAAAAAAGGG‑CAAGCCCTCCAGTAGAAGCCAAGGTTGCAGGTA‑ACAG‑AAAAACCCCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCggtt                                                                   <  1:874935/231‑3 (MQ=255)
                                                                                                                                                                              cGTCACCAACCACCAAAAAATGG‑CAACCCCGACAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACCCCTGACCCCATAATTATCCCCGGAACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTa                                                                 <  2:737706/239‑1 (MQ=255)
                                                                                                                                                                                 cACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATc                                                               >  2:874202/1‑238 (MQ=255)
                                                                                                                                                                                 cACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATc                                                               >  2:835739/1‑238 (MQ=255)
                                                                                                                                                                                       ccacccatAAAGGG‑CACTCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACCCCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATg                                                        <  2:880271/239‑1 (MQ=255)
                                                                                                                                                                                         actcatAAAGGG‑GAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACCCCTGACCCCATAATATTCCCCGACACCATGAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGcc                                                      <  2:62170/236‑1 (MQ=255)
                                                                                                                                                                                          tccatAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCAAACGCCTGCATTCGATAGTTGAATTATTATAAACCGGGTTAACGCGGATGcgg                                                     >  1:778663/1‑237 (MQ=255)
                                                                                                                                                                                           ccatAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACACTAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGt                                                    >  2:467017/1‑239 (MQ=255)
                                                                                                                                                                                            aaaaaaGGG‑CAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGtt                                                   <  2:129380/236‑1 (MQ=255)
                                                                                                                                                                                             caaaatccaattcccccgcAGTAGAGGCCAGGTTTTCAGGTA‑ACAG‑AAAAACCCCTTACCCCATAATATTCCCCGACCCCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGtt                                                   <  1:348237/221‑1 (MQ=255)
                                                                                                                                                                                             caaaaaggctcacccccccAGGAAAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTAA‑CGGGGAGTAAGCCCACTTTGGGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGtt                                                   <  1:587362/226‑1 (MQ=255)
                                                                                                                                                                                              tAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGc                                                                                                     >  1:656882/1‑187 (MQ=255)
                                                                                                                                                                                              tAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGc                                                                                                     <  2:656882/187‑1 (MQ=255)
                                                                                                                                                                                              aaagtGG‑CAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACCCCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGttat                                                 <  2:432373/235‑1 (MQ=255)
                                                                                                                                                                                               aaagtgcaaaTCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACCCCTGGCCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGttat                                                 <  1:789492/231‑1 (MQ=255)
                                                                                                                                                                                               aaaacgcccacccccccAGTTGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACCCCTGACCCCATAATATTCCCCGACCCCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGttat                                                 <  1:626282/228‑1 (MQ=255)
                                                                                                                                                                                               aaaaacacaccccccccaggaagggCCAGGTTTGCCGGTA‑AACA‑AAAAACCCCCGACCCCATAAGTTTCCCCGACACCATCAGGGGGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGttat                                                 <  1:583111/216‑1 (MQ=255)
                                                                                                                                                                                                         ccccGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACCCCTGACCCCATAATATTCCCCGACACCAGCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGct                                       <  2:400227/238‑1 (MQ=255)
                                                                                                                                                                                                         ccccGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGct                                       <  1:47268/238‑1 (MQ=255)
                                                                                                                                                                                                                   tagggCCAGGTTTGGAGGGA‑ACAA‑AAAAAACCCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑GGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACCTAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGtt                                <  1:231020/233‑1 (MQ=255)
                                                                                                                                                                                                                   agagGCCAGGTTTGCAGGTA‑ACAG‑AAAAACCCCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTaa                              <  2:825083/238‑1 (MQ=255)
                                                                                                                                                                                                                   aaagGCCAGGTTTGAAGGGA‑ACAG‑AAAAACCCCTTACCCCATAATATTCCCCGACACCATCAGGGTGA‑AGGGGATTAAGCCCACTTTGTGAGCATCAGCAACCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGtt                                <  1:640546/234‑1 (MQ=255)
                                                                                                                                                                                                                       gCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTa                         >  2:536211/1‑239 (MQ=255)
                                                                                                                                                                                                                       gCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTa                         >  2:783170/1‑239 (MQ=255)
                                                                                                                                                                                                                            gTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTAATTAATATAGTTCTTCGTTAAGGTTAAAAAt                    >  1:297319/1‑239 (MQ=255)
                                                                                                                                                                                                                                    gTA‑ACAG‑AAAAACCCCTGCCCCCATAATTTTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAATCAGGCGAc            <  1:372009/239‑1 (MQ=255)
                                                                                                                                                                                                                                     tA‑ACAG‑AAAAAACCCTGTCCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTCAGCATCAGCATCCGAAGACATAATTAAACTCCTTCGAAGGTGAGATTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAATCAGGCGAc            <  2:803486/238‑1 (MQ=255)
                                                                                                                                                                                                                                     tA‑ACAA‑AAAACCCCCTGCCCCCATAATATTCCCCGACCCCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAATCAGGCg              <  1:404362/236‑1 (MQ=255)
                                                                                                                                                                                                                                          cg‑AAAAACACCTGACCCCATAATAGTCCCCGACACCATCGGGGGTA‑CGGGGATTAAGCCCCCTTTGGGAGCATCATAATCATAAGACATAATTAAACACCTGGAAAGGCGAGCTTCTTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAATCAGGCGACAGTGc       <  1:534440/238‑1 (MQ=255)
                                                                                                                                                                                                                                          aG‑AAAACCCCCGGGCCCCAAAATATTCCCCCCCACCAACCGGGTGA‑AGGGGATTAAGCCCACTTTGTGGGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGGCAGTTTCGTGACAATTAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAATCAGGCGACAGTGc       <  1:547296/239‑1 (MQ=255)
                                                                                                                                                                                                                                          aG‑AAAAACCCCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAATCAGGCGACAGTGc       <  2:153396/239‑1 (MQ=255)
                                                                                                                                                                                                                                           aaaaaaaCCCCTGACCCCGTAAGATGTCCCGACGCCATCAGGGGGA‑AGGGGAGTAAGCCCACTTTGTGAGCCACAGCAGCCGAAAACATAATGAAACTCCTGCGAAGGCGAGCTTCGTGGCAATAAATTACGTCATATCATACGCCTGCATTCGATAGGTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAATCAGGCGACAGTGc       <  1:329967/237‑1 (MQ=255)
                                                                                                                                                                                                                                                aaCCCCTGACCCCAGAATTTTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAATCAGGCGACAGTGCGTtct  <  2:274779/239‑1 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                            
CCACCATGGCGATATTGCCGATCCAGCAGGCCAGCCAGTAGAGGACGTTGGTT‑TGATAACCGAGAAACGGGCCAAAGCA‑GCGGCGGGCGTAAGCGTAAGAA‑CCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAG‑CCCCAGTG‑CACCGATAATCGTCACCAACCATCCATAAATGG‑CAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTA‑ACAG‑AAAAACACCTGACCCCATAATATTCCCCGACACCATCAGGGTGA‑CGGGGATTAAGCCCACTTTGTGAGCATCAGCATCCGAAGACATAATTAAACTCCTGCGAAGGCGAGCTTCGTGACAATAAATTACGTCATATCATACGCCTGCATTCGATAGTTGAATTATTATCGACCGGGTTATCGCTGATGCCGTTATTAATATAGCTCTTCGTTAAGGTTAAAAATCAGGCGACAGTGCGTTCT  >  NC_000913/4336717‑4337187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A