Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F17 I0 R1 155 84.1 1797446 90.9% 1633878 230.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,357,656 T→G 11.6% T321T (ACA→ACC)  cadA ← lysine decarboxylase, acid‑inducible

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,357,6560TG11.6% 378.5 / 3.8 136T321T (ACA→ACC) cadAlysine decarboxylase, acid‑inducible
Reads supporting (aligned to +/- strand):  ref base T (45/68);  new base G (18/2);  total (66/70)
Fisher's exact test for biased strand distribution p-value = 3.96e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 139 total aligned reads displayed.

TGGTGGTGTGCATCATGTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTA  >  NC_000913/4357424‑4357893
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                              
tggtggtgTGCATCATGTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGGGttt                                                                                                                                                                                                                                            >  2:197955/1‑237 (MQ=255)
  gtggtgTGCATCATGTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTCAATCACTTTCCCTTCTACACGGCCACCGCCCATACCGCCTTTACCCTCGTACATCGGTGAGAAGTTGGTGTAAGG‑CACCCCACCGGAGCCCAAGTGGATGGATTTCAAATCCAGGGTtttttt                                                                                                                                                                                                                                        >  1:162906/1‑239 (MQ=255)
     gtgtGCATCATGTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCCTACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGTTGTAAGG‑CACCCACGCGGCGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTtgat                                                                                                                                                                                                                                     >  2:861310/1‑239 (MQ=255)
     gtgtGCATCATGTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGGGTAAGG‑CACCCACGCGGAGTCAAAGTGGAGGGATTTCACATCCAGGGTTTTCTtgtt                                                                                                                                                                                                                                     >  2:292965/1‑237 (MQ=255)
     gtgtGCATCATGTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCCCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACCCGGAGTCAAAGGGGATGGATTTCCCATCCAGGGTTTTCTtgtt                                                                                                                                                                                                                                     >  1:802909/1‑237 (MQ=255)
     gtgtGCATCATGTAGGCTTCGTTAAAGGTTTCTTCGATTACGCCA‑CCTTTAACGTGGATCATGGACGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGCCCACCGCTCATACCGCCTTTCTCTTCTTAAATCGGTGGCAACGTGGCGTAAGG‑CACCCCCCCGGGGTCAAAGGAGATGGTATCCAAATCCAGGGTTCTCTggag                                                                                                                                                                                                                                     >  1:248269/1‑238 (MQ=255)
       gtgCATCATGTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATCCCGCATTTACCTTCGTAACTCGCTGAGAAGTTGTTGTAAGG‑CACCCACCCCGAGTCAAATAGGCTGGATTTCCCAACCCAGGTTTTCTtgatga                                                                                                                                                                                                                                   >  1:355471/1‑239 (MQ=255)
       gtgCATCATGTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGGGTAAGG‑CACCCACGCGGAGTCAAAGAGGATGGATTTCACATCCAGGGTTTTCTtgagga                                                                                                                                                                                                                                   >  1:485575/1‑239 (MQ=255)
         gtcttttGTAGGCTTGGTTTAAGGTTTCTTCGTTTACGGCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTC‑TACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGt                                                                                                                                                                                                                                <  1:279993/233‑1 (MQ=255)
          ctttatGTTGTCTTTGTTAAAGGTTTCTTCGTTTACGTCA‑ACTTTAACGTGGATTATGGAAGCCGGGGAGAACGCCGCCAGCAGTTTGGGAGTGGTCTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGt                                                                                                                                                                                                                                <  1:197955/235‑1 (MQ=255)
          catcatGTAGGCTTTGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGt                                                                                                                                                                                                                                <  2:841973/239‑1 (MQ=255)
          catcatGTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGGACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGTGGAGAAGTTGGGGTAAGG‑CACCCACGCGGAGTCAAAATGGATGGATTTAAAATCCAGTGTTTTCTTGATAAAgg                                                                                                                                                                                                                                >  1:329580/1‑238 (MQ=255)
          attcattgtggtctCGTTAATGGTTTTGTCGTTTACTTCG‑TCTTTGACGTGGATCTTGGAAGCGTGATAGAACGGCGCAAACAGTTGGTGCATGGCCGTGGTTTCGTAAATCTCTTTCCCTTCTACACGGCCACCTCTCATCCCGCATTTACCGTCTTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCAAGCGGAGTCAAAGTGGATGGATTTCTCATACAGTGTTTTCTTGATGAAGt                                                                                                                                                                                                                                <  1:727637/226‑1 (MQ=255)
           attattgaGGCGTCGGTAAAGGGTTCTTCGTTTTCGTTA‑CCTTTAACGTGGATCATGGAAGCCGGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAAGCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGt                                                                                                                                                                                                                                <  1:110000/231‑1 (MQ=255)
             catGTAAGCTTCGTTAAAGGTTTCTTCGTTGAC‑TCACCCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGGGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGGTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCgg                                                                                                                                                                                                                             <  2:505127/239‑1 (MQ=255)
               tGTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGgtg                                                                                                                                                                                                                           <  2:227523/239‑1 (MQ=255)
               tGTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCCCATCCCGAATTTACCTTCGTAAATCGGTGAGAAGTTGGGGTAAGG‑AACCCACGCGGGGTCAAAGGGGCTGGAGTTCAAATACAGGGTTTTCTTGATAAAGAGGgtg                                                                                                                                                                                                                           >  1:227523/1‑239 (MQ=255)
                gTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAGGTTGGTGTAAGG‑ACCCCACGCGGAGTCAAAGTGGATGGATTTCCCCTCCCGTGTTTTCTTGTTGAAGTCGgggt                                                                                                                                                                                                                          >  1:470314/1‑239 (MQ=255)
                    gCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGGGAGTGGATGGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAATTCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGCGTCAAAGTGGAGGGATTTAAAATCACTTGTTTTCTTGAGAAAGACGGGGTGGTa                                                                                                                                                                                                                      >  1:838559/1‑239 (MQ=255)
                       tCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTAcag                                                                                                                                                                                                                   <  2:608928/239‑1 (MQ=255)
                       tCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTAcag                                                                                                                                                                                                                   <  2:735522/239‑1 (MQ=255)
                       tCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATAACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑AACCCACGCGGCGTCTAAGTGGACGGATTTCACATCCATCGTTTTCTTGATGAAGCGGGTGTTGTAaag                                                                                                                                                                                                                   >  2:147833/1‑239 (MQ=255)
                         gTTCAAGGGTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGACAGACGGCCGTCAACAGTGTGAGATCGGACTGGAGTTCCTACATCAATTTCCCTTCTACAAGGCCACCGCTACTACCGCCTTTACCCTAGTAAATCGGTTAGCAGTTGTGGTACGGCCACACACGC‑GAGTCCAAGTGGAAGGAGTTTGAATCCATAGTTTCCTTGATGaacccgcagtttaaactca                                                                                                                                                                                                                 >  1:748059/1‑222 (MQ=255)
                         gTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAACTCGGTGCGACGTTGGTGTAAGG‑CCCCCACGCCGAGTCAAATTGGAGGGATTTCACAGCAAGGAGTTTTTTTATGAAATCGGGGTTGTaaaaca                                                                                                                                                                                                                 >  1:462566/1‑234 (MQ=255)
                         gTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGGAGTTGGGGTAAAG‑ACCCCACGCGGAGTCTAAGAGGAGGGATTTCAAATCAAGGGTTTTCTTGATGaaaaggggggtgtaaagga                                                                                                                                                                                                                 >  1:331366/1‑222 (MQ=255)
                         gTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTAcagca                                                                                                                                                                                                                 <  2:433271/239‑1 (MQ=255)
                         gTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTAcagca                                                                                                                                                                                                                 <  2:488650/239‑1 (MQ=255)
                           tAAAGTTTCCCTCGTTTACGTGC‑CCTTTAACTGGGATCATGGAAGCCTTAGAGAACGCAGCCAGCAGTTTGTGAGTGGCCTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCCTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGa                                                                                                                                                                                                               <  2:660232/239‑1 (MQ=255)
                           tAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCCCTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGa                                                                                                                                                                                                               <  1:519501/239‑1 (MQ=255)
                           tAAAGGGTTCTTCGTTTACGGCC‑CCTTTAACGGGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGa                                                                                                                                                                                                               <  2:863427/239‑1 (MQ=255)
                              aGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGGGGAGGGATTTCAAATCCCGTGTTTTCTTGATGAAGTGGGtgttgaaaggaggacaa                                                                                                                                                                                                            >  1:72879/1‑227 (MQ=255)
                                 tttttgtgTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGGAGTTTGTGAGTGGACTGGGTTGAGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACcatc                                                                                                                                                                                                          <  2:119461/231‑1 (MQ=255)
                                 tttCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACcatc                                                                                                                                                                                                          <  2:8131/238‑1 (MQ=255)
                                 tttCCTCGTTTACGTCC‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACcat                                                                                                                                                                                                           <  2:243856/237‑1 (MQ=255)
                                          ttACGTCT‑CCTTTAACGTGTATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTagag                                                                                                                                                                                                <  2:241248/239‑1 (MQ=255)
                                          ttACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTagag                                                                                                                                                                                                <  2:705954/239‑1 (MQ=255)
                                                    cTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCGGACCATCATAGGTAGAGTTGGTAAtt                                                                                                                                                                                       >  2:505788/1‑239 (MQ=255)
                                                    cTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAAtt                                                                                                                                                                                       <  2:139255/239‑1 (MQ=255)
                                                     tttAACGGGGATCCAGGACGCCTGAGATAACGCCGCCAACAGTTTGGGAGTGGACTGGGGTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CCCCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTa                                                                                                                                                                                      <  1:629114/239‑1 (MQ=255)
                                                              gATCATGGAAGCCTGAGCGAACGCCGCCAGCAGTTTGTAAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTCCACGGCCACCGCTCATACCGCATTTACCTTCGTAAATTGGTGAGAAGTTGGTGTAAGG‑CCCCCCCGCGGCGTCCAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGCAGCCGGTGTTGTACAGCAGACCCTCATAGGTAGAGTTGGTAATTACCGCCTGt                                                                                                                                                                              >  1:150489/1‑238 (MQ=255)
                                                              gATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGt                                                                                                                                                                              >  2:765609/1‑238 (MQ=255)
                                                              gATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGGGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCAAAGGGAGAGTTGGGAATTACGGCATga                                                                                                                                                                              >  1:401034/1‑237 (MQ=255)
                                                                         ccTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGGTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAAATACAGCagagaacggccggggg                                                                                                                                                                  >  1:265310/1‑224 (MQ=255)
                                                                           tGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGAGTTTTCTTGATGAAGACGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGAAATTACAGAATGAACCGGGCAGGtggg                                                                                                                                                                >  1:246024/1‑236 (MQ=255)
                                                                             agagaACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCCCATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCTTAGGTAGAGTTTGTAATTACAGCATGTATCGGCAAGGTGGCGt                                                                                                                                                              >  1:848044/1‑239 (MQ=255)
                                                                                  aCGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGGGTTTTCTTGATGAAGTCGTGGTTGTACACCCGACCATCTAAGGTAGAGTGGGTAATTACAGCCTGTCCCGGCACGGTTGCGGTTggg                                                                                                                                                         >  1:762291/1‑238 (MQ=255)
                                                                                              gTTTGTGAATGGACGTGGTTTCGTAAACTCCTTTCCCTTCAACACGGCCATCGCCTATCCCGAATTTACCTTCGTAACGCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCTGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTTCAGCATGTACCGGTCAGGTTGCGTTTGGTGTTTCTTTCAc                                                                                                                                              <  2:388065/238‑1 (MQ=255)
                                                                                                ttGTGAGTGGTCTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCAcgcg                                                                                                                                           <  2:378808/239‑1 (MQ=255)
                                                                                                ttGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCAcgc                                                                                                                                            >  2:368289/1‑238 (MQ=255)
                                                                                                       tGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACTTTCGTAAATCGGTGCGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGGTGGATTTCACATCCAGTGTTTTCTTGCAGCAGCCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACTCAGAGTACTGCCCAGGCTGCGTTTGGGGTTTTTTTCACCCGCTTACCa                                                                                                                                    >  1:568797/1‑239 (MQ=255)
                                                                                                         gACGGGGTTTCGTAAATCACTTTCCCTTCTACAATGCCACCGCTCATCCCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGACTTCACATCCAGGGTTTTCTTGATGAAGTCGGTGTGGTCCGGCGGACCCTCATAGGGAGCATTGGTAATTACAGCGGGTACCGGCCAGGTTGCGTTAGGTGTATCTTTCACACGCtagtagat                                                                                                                                  >  1:620878/1‑232 (MQ=255)
                                                                                                                 ttCTTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCg                                                                                                                           <  2:772039/238‑1 (MQ=255)
                                                                                                                   cGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGGGTTTCTTTCACGCGCTTACAAATGGAAGCGGGc                                                                                                                        >  1:112325/1‑239 (MQ=255)
                                                                                                                             tttCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGt                                                                                                                                                                                           >  2:186359/1‑162 (MQ=255)
                                                                                                                              ttCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCAct                                                                                                            <  2:246024/239‑1 (MQ=255)
                                                                                                                               tCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTCCAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCAc                                                                                                             >  2:113684/1‑237 (MQ=255)
                                                                                                                                    tCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGAAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGAGATTAGCAATGGCACCGGGCTGGAA‑TTAACTCTGTgg                                                                                                      >  2:472120/1‑239 (MQ=255)
                                                                                                                                     cTACACGGCCCCCTCTCATACCGCATTGACCTTCGTAAATCGGTGAGAAGTTGGTTTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTggg                                                                                                     <  1:505788/239‑1 (MQ=255)
                                                                                                                                        ctcggcccccgcctaaaaccgaTTTGCCGTCGGAAATCGGTGAGAAGTTGGTGTAAGG‑CAACCACGCGGAGGCAAAGTGGATGGATTTCACTCTCAGTGTTTACTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATa                                                                                                  <  1:242356/218‑1 (MQ=255)
                                                                                                                                        cacGGCCACCGCTCATTCCGCATTTACCTTCGTAAATCGGTGAGAAGTGGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATa                                                                                                  <  2:355471/239‑1 (MQ=255)
                                                                                                                                          cGGCCCCCGCTCATACCGCATTTACCTGTGGAAATCGGTTAGAAGTTGGTGTAAGG‑CACCAACGCGTAGTAAAAGTGGATGGATTTCACATCCAGTTTTTTCTTGATGAAGTCGGTGTTGGCCAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATacc                                                                                                <  1:861310/239‑1 (MQ=255)
                                                                                                                                          cGGCCACCGCTCATACCGCCTTTACCGTCGTAAATCGGTGAGAAGTGGGTTGAAGG‑CACACACGCGGAGTCAAAGTTGATGGATTTCACATCTAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATacc                                                                                                <  2:409032/239‑1 (MQ=255)
                                                                                                                                          cGGCCACCGCTCATACCGCATTTCTCTTCGTAAAGCGGTGAGAAGTTGGTGTAAGG‑CCCCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATacc                                                                                                <  1:127784/239‑1 (MQ=255)
                                                                                                                                           ggCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCCTAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTTACGCGCTTAGCAATGGTACCGGGCTGGAA‑TTCACTCTGTGGGAAacc                                                                                                >  1:126724/1‑238 (MQ=255)
                                                                                                                                           ggCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATacc                                                                                                >  2:820489/1‑238 (MQ=255)
                                                                                                                                             ccACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTa                                                                                                                              >  1:357124/1‑207 (MQ=255)
                                                                                                                                             ccACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTa                                                                                                                              <  2:357124/207‑1 (MQ=255)
                                                                                                                                             ccACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAACATGTACCGGCCAGGTTGCGTTTGGGGTTTCTTTCACCCGCATAGCCATGGGAGCGGGCTGGAA‑TTCACTCTGggggtaaacaac                                                                                             >  1:523099/1‑231 (MQ=255)
                                                                                                                                               aCCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGGGTTTCTTTCACGCGCTTAGCAATGGTAACGTGCTGGAA‑TTCACTCTGTGGGATACCACCaa                                                                                           >  2:198018/1‑239 (MQ=255)
                                                                                                                                                  gatCATACCGCTGTTACCGTCGTAAATCGGTGAGAAGTTGGTGGAAGG‑CACCCAAGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGaa                                                                                        <  2:417939/237‑1 (MQ=255)
                                                                                                                                                  gCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATaccac                                                                                              <  2:128151/233‑1 (MQ=255)
                                                                                                                                                  cctccttcccctttttCCTTCGTAAATCGGTTAGAAGTTGGTTTAAGG‑CCCCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGaa                                                                                        <  1:368289/227‑1 (MQ=255)
                                                                                                                                                       tACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCg                                                                                   >  2:755839/1‑239 (MQ=255)
                                                                                                                                                       tACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGGGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGGGTTTCTTTCACGGGCTTAGCAATGGTGGCCGGTTGGAA‑TTTAATCTTTggagaacacccaaaaaaaccg                                                                                   >  1:234031/1‑220 (MQ=255)
                                                                                                                                                          cGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTaa                                                                                <  2:329580/239‑1 (MQ=255)
                                                                                                                                                          cGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTaa                                                                                <  2:445060/239‑1 (MQ=255)
                                                                                                                                                           gCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGGGCTGGAA‑TTCCCTCTGTGGGATACCACCAAAAATACCGTAAg                                                                               >  1:430526/1‑239 (MQ=255)
                                                                                                                                                            cATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCCCGCGCTTAGCAATGGTAACGGGCTGGAA‑TTCCATCTTTGGGATACCCCCAAGAATACCggcg                                                                                >  1:128151/1‑234 (MQ=255)
                                                                                                                                                                     tCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CTCCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGt                                                                     <  2:126222/239‑1 (MQ=255)
                                                                                                                                                                     tCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGt                                                                     <  2:331366/239‑1 (MQ=255)
                                                                                                                                                                      cGTGAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGgtg                                                                                                                                                                                                                           >  1:400886/1‑89 (MQ=255)
                                                                                                                                                                      cGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGgtg                                                                                                                                                                                                                           <  2:400886/89‑1 (MQ=255)
                                                                                                                                                                       gTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGAGGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCCCTCTGTGGGATACCACCAAGAATACCGTAAGGGTTACGGGGCg                                                                   >  1:740830/1‑239 (MQ=255)
                                                                                                                                                                         aaaTCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCggg                                                                 <  2:162906/239‑1 (MQ=255)
                                                                                                                                                                                 gagaAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCCCGCGCTTAGCAATGGTAGCATGCTGGAA‑TTCACTCTGTGGGATACCACCACGAATACCGTAGTCGTTACGGGTCGGGCGGAAATa                                                         >  2:495504/1‑239 (MQ=255)
                                                                                                                                                                                    aagtgtgggtAAGG‑CACCCCCGGGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACGCTGTGGGATACCACCGAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGAt                                                      <  1:113684/231‑1 (MQ=255)
                                                                                                                                                                                     aGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGAt                                                      <  2:485575/238‑1 (MQ=255)
                                                                                                                                                                                              tgaggcgacgatgcgGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGAGGAAGTCGGTGTTGTACAGCAGACCATCATAGGTATAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTaa                                              <  2:692288/226‑1 (MQ=255)
                                                                                                                                                                                                   cACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTTGTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCg                                         <  2:241354/238‑1 (MQ=255)
                                                                                                                                                                                                   cACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGGTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑tt                                                                                                                <  2:728912/167‑1 (MQ=255)
                                                                                                                                                                                                      ccACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGGGGGCTGGAATTTCACCTTGT‑GGATACCCCCAAGAATACCGTAAGCGTTGGGGGTCGGGGGGaaaaaaatagggggaaaaacgaca                                      >  1:707834/1‑217 (MQ=255)
                                                                                                                                                                                                               ggtaaagtttgtggatTTCACATCCATGGTTTTTTTGATTAAGTCGGTGTTGTACAGCAGGCCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCtcatcatcatc                             <  1:854137/227‑1 (MQ=255)
                                                                                                                                                                                                                        gatggatTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCTGGCGGAAATAGATTGACGTACCATCGCTCATCATCATCAGGGGGGTCa                   >  2:848379/1‑239 (MQ=255)
                                                                                                                                                                                                                          tggatTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCATTCTGTGGGTTACCACCAAGAATACCGTAACGGTTACGGGTCGGGCGGAAATAGATTGGCGGAACATCGATCCTCATCATCAGGTGGGTCaag                 >  1:872753/1‑237 (MQ=255)
                                                                                                                                                                                                                          tggatTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACCCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAACTAGATTTGCGTAAAATCGCCCATAAACATCAGGGGGGGCAgg                 >  1:814844/1‑238 (MQ=255)
                                                                                                                                                                                                                                 tcaattcAGTTTTTTTTTGATTAAGTCGGTGTTTGTCAGCAGACCATCATAGGTAGGTTTGGTAATTTAAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTtgt          <  1:292965/233‑1 (MQ=255)
                                                                                                                                                                                                                                       cAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGt    <  2:853146/239‑1 (MQ=255)
                                                                                                                                                                                                                                         gtgtTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTagag                                                                                                                                                                                                <  2:585118/50‑1 (MQ=255)
                                                                                                                                                                                                                                         gtgtTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTagag                                                                                                                                                                                                >  1:585118/1‑50 (MQ=255)
                                                                                                                                                                                                                                         gtgtTTTCTTGAGGGAGGGGGTGTTTTACAGCAGACCAGCATAGGGTGGGTTGGTGATGACAGCATGTTCCGGCCAGGTTGGGTTTGGTGTGTACTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGGGGCAGTTa  <  1:576369/239‑1 (MQ=255)
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                              
TGGTGGTGTGCATCATGTAGGCTTCGTTAAAGGTTTCTTCGTTTACGTCA‑CCTTTAACGTGGATCATGGAAGCCTGAGAGAACGCCGCCAGCAGTTTGTGAGTGGACTGGGTTTCGTAAATCACTTTCCCTTCTACACGGCCACCGCTCATACCGCATTTACCTTCGTAAATCGGTGAGAAGTTGGTGTAAGG‑CACCCACGCGGAGTCAAAGTGGATGGATTTCACATCCAGTGTTTTCTTGATGAAGTCGGTGTTGTACAGCAGACCATCATAGGTAGAGTTGGTAATTACAGCATGTACCGGCCAGGTTGCGTTTGGTGTTTCTTTCACGCGCTTAGCAATGGTAGCGTGCTGGAA‑TTCACTCTGTGGGATACCACCAAGAATACCGTAAGCGTTACGGGTCGGGCGGAAATAGATTGGCGTAACATCGCTCATCATCATCAGGTGGGTCAGCGATTTGTGGCAGTTA  >  NC_000913/4357424‑4357893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A