Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F9 I0 R1
|
71 |
67.1 |
1514203 |
90.7% |
1373382 |
220.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,388,666 |
A→C |
16.9% |
V49G (GTG→GGG) |
tpx ← |
lipid hydroperoxide peroxidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,388,666 | 0 | A | C | 16.9%
| 143.5
/ 2.3
| 68 | V49G (GTG→GGG) | tpx | lipid hydroperoxide peroxidase |
| Reads supporting (aligned to +/- strand): ref base A (31/22); new base C (2/11); total (33/35) |
| Fisher's exact test for biased strand distribution p-value = 1.12e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTGCCACACCGTAAGCTTGCAGAAATTCAGCGTTACGGAAAGTGGAGAGGGTGATAACGTTGTTCAGACCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACATATAGTTAACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGC > NC_000913/1388448‑1388884
|
ttGCCACACCGTAAGCTTGCAGAAATTCAGCGTTACGGAAAGTGGAGAGGGTGATAACGTTGTTCAGACCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGtt < 1:590809/228‑1 (MQ=255)
gtGCAACACCTGAAGCTTGCAGAAATTCGGCGGTACGGAAAGGGGAGAGGGTGATAACGTTGTTCAGACCGTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGtt < 1:666683/227‑1 (MQ=255)
cGTAAGCTTGCAGAAATTCAGCGTTACGGAAAGTGGAGAGGGTGATAACGTTGTTCAGACCATCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCaaa < 1:623686/229‑1 (MQ=255)
cGTAAGAGTGCAGAAAATCAGCGTGACGGAATGTGGAGAGGGTGATAACTGTGTTCAGACCTTCTGCGCCGCAGAAACGAGACTGGGGGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCaaa < 1:345926/229‑1 (MQ=255)
tGCAGAAATTCAGCGTTACGGAAAGTGGAGAGGGTGATAACGTTGTTCAGACCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAACAACCGGTATCAATACTCGGGAAAATGTTCAGCCCTTTTCGTTTACCCGCAAAcgtcccgc > 1:549183/1‑222 (MQ=255)
tGCAGAAATTCAGCGTTACGGAAAGTGGAGAGGGTGATAACGTTGTTCAGACCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCACACCTTTGAGTTTACCCCCAAACTGACCGa > 2:713945/1‑229 (MQ=255)
tGCAGAAATTCAGCGTTACGGAAAGTGGAGAGGGTGATAACGTTGTTCAGACCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGAGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACGGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATTGTCATAACTTTGCGTTTACCCCAAAACTGAccag > 2:586160/1‑227 (MQ=255)
cAGAAATTCAGCGTTACGGAAAGTGGAGAGGGTGATAACGTTGTTCAGACCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCGCCAAACTGACCGAgg > 1:88874/1‑229 (MQ=255)
agagGGTGATAACGTTTTTCAGACCTTCCGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGGGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCAc < 1:77815/229‑1 (MQ=255)
agacgtttaTAACCGTGTCCAGGCATTCTGCGACGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGTACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTGCTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCCATTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCAc < 1:327284/221‑1 (MQ=255)
gggTGATAACGTTGTTCAGACCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACga < 1:130875/228‑1 (MQ=255)
cttcttCAGCCCTTATCCGCCCGAGAAACGGGGCTGGGGGAACGGCAGATCGGCAGAGATACACAGCCCAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGt < 2:702008/224‑1 (MQ=255)
tgttCAGACCTTCTGCGCCCCAGAAACGAGTCGGGGCGAACGGCAGATCGGCAAAGTTACACAGCACAACGGTGTTGGCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGGTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCt < 2:745061/228‑1 (MQ=255)
gttCAGACCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTCCGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGAAAGATCTTTTGCCACGAGAGAAAAAATCTg > 2:607877/1‑228 (MQ=255)
gttCAGACCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTg < 1:607878/228‑1 (MQ=255)
gttCAGACCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTAAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGGGACGTCAGACAGATCTTTTGCCACGAGAGTCAAAGTCTg > 1:254270/1‑228 (MQ=255)
aCCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAACCTGACCAGGGGTGAGTTCAGACAGATCTTTTGCAACGAGAGTAAAAGAATGCGCttgg > 2:630208/1‑227 (MQ=255)
aCCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGAAAGATCTTTTGCCACGAGAGTAAAAATCTGCGCt > 1:510315/1‑226 (MQ=255)
cTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCCGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTAcc > 1:29115/1‑229 (MQ=255)
cTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGAACTTTTGCCACGAGAGTAAAAGCCTCGGCTTTGCTAcc > 2:376053/1‑229 (MQ=255)
cTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGGATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAggg > 2:287284/1‑177 (MQ=255)
cTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGAGTTGTAGATCTCAGATGCCCGTTGGG‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTTCGTTTAACCGCAACATGACCAAGGCAGACGTCAGACAAAGCTTTTGCCACTGCACTAAAAGACTTGACTTTGCTAcc > 1:351499/1‑229 (MQ=255)
gcAGAAACGACGCTGGGCGAACGGCAGATCGGCAGGGATACACAGCAAAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGGGGCCCAAACCCCGGTATCAATCCTGGGGAAAATGTTCAGCCTTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCAAGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTg < 2:254270/228‑1 (MQ=255)
cAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGGGACGTCAGCCACATCTTTTGCCACGAGAGTAAAAGCCTGGGCTTTGCAACCCACCTggg > 2:282712/1‑227 (MQ=255)
aaccggaaccgggCGAACGGCAGTTCGGCAGAGATACACAGCACAACGGTTTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACGTATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATTTTCAGCCCTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGa < 1:178664/219‑1 (MQ=255)
gggCGAACGGCAGATCGGCAGAGATACCCAGACCAACGGTTTTGCCGATCTCAGTTGCCAGTTGGT‑TAACCTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAACCTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTCCCCGCCTGCGGGATGGAATTGGc < 1:586161/229‑1 (MQ=255)
gggCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGGAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGc > 1:683239/1‑229 (MQ=255)
gCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTTCCACGAGAGTAAAAACATGCGCTTTGCTACCCGCCCGCGGGATGGAAATGGCGa > 1:751653/1‑229 (MQ=255)
agtgttaccaacgcacaCGGTTGTGTCCACCTCGTTTGCCAGTTGGT‑TAAATTTCCGTACTGATGCGGCGCAAACCCCGGTATCAAGACCCGGGAAAATGTTCAGCCTTTTGCGTTTACCCGCAAACGGACCGAGGGTGACGTCAGACAGATCTTTTGCCAGGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGccc < 2:751652/213‑1 (MQ=255)
aattaccaaGCAAAACGGTGGTGTCAGTCTCAGTTGTCATTTGGT‑TAAACTTACGGACTGATGCGGCGCAAACACCGGTACAAATACTCGGAAAATTGTTCAGCACTTTGCGTTTCCCCGCAAACTGACCGGGGGTGCCGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTg < 2:522146/221‑1 (MQ=255)
gtccaactcccaccGGTGTTGTCGATCCAAGTTTCAAGTTGGT‑TAAACTTACGTCCGGATGCGGCGCACACCCCGGTATCAATACGCGGGAAAATGTTCAGCACTTTGCGTTTCCCCGCAAATTGACCGAGGGTAACGTCAGACAGATTTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGa < 2:618806/216‑1 (MQ=255)
caGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACCGATCTTTTGCCACGAGAGTAAAAGTCGGCGCTTTGCTACCCGCCTGCGGGTTGGAATTGGCGACTGTAACCGGGTTGCCCGGGAAAAGa > 2:370693/1‑229 (MQ=255)
ggagacgggtggtGGCGATTTCAGTTGCCAGTTGGT‑TAAACTTACGTGCTGGTGCGGCCAAACCAACGGTATCAATGCTGGGGAAAGTGTTCAGCATTGTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATGTTTTGCCAGGAGATTAAAAGTATGGGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGaa < 1:47044/221‑1 (MQ=255)
cacaACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTg > 1:522146/1‑219 (MQ=255)
cagaCGGTGTGGTCGATCTGAGTTGCAAGTTGGT‑AAAACTTACGTTCTGAGGCTGCGCAACCACCGGTAACAATACTCGGGAAAATGTTCAGCACTTCGAGTTTACCCGCAAACTGCCCGAGGGTGACGTCAGACAGATCTTTTGCCAGGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGaa < 2:57494/223‑1 (MQ=255)
caaagggTTTTGTCGATCTCA‑TTGGCCGTGGTTGTAACCTTCCGTACTGTTGCGGCGCAAACACCGGTACCAATACCGGGGAAAATGTTCAGCATGTTGCTTTTCCCCGCAAACTGCCCGAGGGTGACGCCAGACGGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTCCCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAAc < 2:750894/222‑1 (MQ=255)
cGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAAAGTAAAAGACTGCGCTTTCTTACCCGCCTGCGGGTTGGAATTGGGAACTGTACCCGGGTTGCCCTGGAATTGAACGGTTtg > 1:82577/1‑229 (MQ=255)
gtttggtcatttcttgTTGCCTGTTGGT‑TAAAATTCGTTCCTGTCGCGGCGCAAACCCCGGTATCAATACCGGGAAAAATTTTCAGCCTTTTGCGTTTCCCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTGGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTtgtg < 2:93283/214‑1 (MQ=255)
tgttgtCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGGGACTGTACCCGGGTTGCCCTGGAAATGAAAGGTTggt > 2:411486/1‑227 (MQ=255)
ttgtCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGCAGGAATTGGCTACTGTAACCGGGTTGCCCTGCAAATGAACGGgttaggca > 2:55722/1‑223 (MQ=255)
ttgtCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATAAACGGTTtgtgcaa > 1:299866/1‑226 (MQ=255)
ttgtCGATATCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCTGCCAGATCTTTTGCCACGAGGGAAACAGTCTGCGCTTTGGTAACCGCCTGCGGGCTGGAATTGGCGCATGTAACCGGGTTTCCCTGGAAATGACCgggaggggaag > 2:360300/1‑220 (MQ=255)
ggcgatccaggTTGACTGTTGGT‑TAAATTTCTGTCCTGTTGCGCGGAAAACCCCGTAAACAAAACTCGGGAAAATGTCCACCCCTTTGCTTTTACCCGAAACCTGACGGAGGTGGACGTCAGACAGAGTTTTTGCCACGATAGTAAAAGTCTGCGTTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATg < 2:734872/219‑1 (MQ=255)
tCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAACCACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGGGCTTTGCTACCCGCCTGCGGGATGGATTTGGCTACGGTACACGGGTTGCCCTGGAAATAAACGGTTTGGGACAt > 1:493432/1‑227 (MQ=255)
tCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACGCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGAcct > 1:393570/1‑225 (MQ=255)
ctcGGTGGCCGGTTGTT‑TAACTTTACGTTCGGATGGGGCCAAAACACGGGTATAAATCCCGGGAAAAATGTTCAGCTCTTTGCGTTTCCCCGAAAACTGACCGAGGGTGACGTCAGACCGATCTTTTGCCACGAGAGAAAAAGTCTGCGCTTTGCTCCCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTAt < 2:67591/228‑1 (MQ=255)
ctcAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTtgtg > 1:93283/1‑218 (MQ=255)
ctgtgtgT‑TAAACTGACGTATGGGTGGGGCGAAAACCCCGGTATCAAAACTGGGGAAAATGTTCAGCACTTTGCGTTTACCCGAAAACTGACGGAGGGTGACGTCAGACAGATCTTTGGCCAAGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGtt < 2:88874/223‑1 (MQ=255)
aGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGttt > 1:513516/1‑229 (MQ=255)
ttgtgtaacgttACGCACGTATGCGGCGAAAACCCCGGTATCAATACGCGGGAAAATGTTCATCACTTTCGTTTTACCCGCAAACTGACCGAGGGTGCCGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTAc < 1:385820/219‑1 (MQ=255)
tGGT‑TAAACTTACGTCCTGATGCGGCCAAACCCCCGGTATCAATACGCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAATGGCCCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACa < 1:268397/229‑1 (MQ=255)
t‑tAAACTTACGTATTGATGCGGCCCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCCCTTTGCTTTTGCCCGCAACCGGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACa < 1:713946/226‑1 (MQ=255)
aatttACGTATCGGTGCGGCCAAAACACCGGGAAAATAACTGGGGAAAGTGTCAAGCATTTTGCGTTTCCCCGAAAACGGACCGGGGGTCACGTCAGACAGATTTTTTGCCAGGAGGGAAAAAGTCGGCGCTTTGCTACCCGGCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACATATAGt < 2:735518/226‑1 (MQ=255)
tGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGAAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACATATAGTTAACGTCacac < 1:376053/229‑1 (MQ=255)
ggagccggcgCAAACCCCGGTATCAATCCTCGAGAAAATGTTCAGCCCTTTGCGTTTCCCCGCAAACGGACCGGGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACATATAGTTAACGTCacac < 1:503633/224‑1 (MQ=255)
aTGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGACTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAAGGAACGGTTTGTACCATGCTTAACTTCCCGGTTTACATATAGTTAACGTCACACCt > 2:632638/1‑229 (MQ=255)
ggccCAAACCCGGGTATAAATCCTCGGGAAATTGTTCAGCATTTTGCGTTTCCCGGCAAACTGACCGGGGGTGCAGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACATATAGTTAACGTCACACCTAGtt < 2:29115/229‑1 (MQ=255)
cacCGTTAACAATACTTGGGAAAATTGTCAGGACTTGGCGTTTACACGCAAACTGACCGAGGGTGTCGACAGACAGAACTTTTGCCACGAGAGTAAAAGTCTGCGATTTGGTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACATATAGTTAACGTCACACCTAGTTTATGCTaa < 1:558407/229‑1 (MQ=255)
taaaaaTACT‑GGGAAAATGTTCAGCCTTTTGCGTTTACCCGAAACCGGACCGAGGGTGACGTCAGACAGATCTTTTGCCGCGGGAGTAAAAGTCTGCGTTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACATATAGTTAACGTCACACCTAGTTTATGCTAACTGTCaa < 1:226936/225‑1 (MQ=255)
cGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACATATAGTTAACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGc > 2:529085/1‑229 (MQ=255)
cGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATATTTCCTGTTTACATATAGTTAACGTCACACCTAGTTTATGCT‑ACTGTCAATAACACAGCa > 1:635050/1‑229 (MQ=255)
gggAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTCGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTACCCTGGAACTGAACGGTTTGAGACATGATTATCTTTCCTGTTTCCCTATAGTTAACGTCACACCTAGATTATGCTAACTGTCACTAACACAGCa > 1:33659/1‑229 (MQ=255)
gggAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGAGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGGGACATGATTATCTTTCCGGTTTACATATAGTTAACGTCGCCCCTAGTTTATGCTAACTGTCAATAACACACCa > 2:237453/1‑229 (MQ=255)
gggAAAATGTTAAGACTTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACATATAGTTAACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCa < 1:282712/229‑1 (MQ=255)
gggAAAAGTTTCAGCCCGTTGCGTTTACCCGAAAACGGACCGAGGGGGACGCTAGTCAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACATATAGTTAACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCa < 1:393397/229‑1 (MQ=255)
ggAATATGGTCAGCTCTTTGCGTTTACCCGGAAACTGACCGGGGTTGACGGCGGACAGTTCTTTTGCCACGAGAGTAAAAGTCTGCTCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACATATAGTTAACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCa < 1:730364/228‑1 (MQ=255)
gAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACG‑GAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGACCGGTTTGTGAAATGATTATCTTTCCTGTTTACTTATAGTTAAAGGCACACCTAGTTTTTGCTAACTGTCAATAACACATCAAAc > 2:365574/1‑229 (MQ=255)
aaTGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACAAATAGTTAACGTCACACCGAGTTTATGCTACCTGTCAATAACACAGCAAACGc > 1:515148/1‑229 (MQ=255)
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TTGCCACACCGTAAGCTTGCAGAAATTCAGCGTTACGGAAAGTGGAGAGGGTGATAACGTTGTTCAGACCTTCTGCGCCGCAGAAACGAGACTGGGCGAACGGCAGATCGGCAGAGATACACAGCACAACGGTGTTGTCGATCTCAGTTGCCAGTTGGT‑TAAACTTACGTACTGATGCGGCGCAAACACCGGTATCAATACTCGGGAAAATGTTCAGCACTTTGCGTTTACCCGCAAACTGACCGAGGGTGACGTCAGACAGATCTTTTGCCACGAGAGTAAAAGTCTGCGCTTTGCTACCCGCCTGCGGGATGGAATTGGCGACTGTAACCGGGTTGCCCTGGAAATGAACGGTTTGTGACATGATTATCTTTCCTGTTTACATATAGTTAACGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGC > NC_000913/1388448‑1388884
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
