Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F9 I0 R1
|
71 |
67.1 |
1514203 |
90.7% |
1373382 |
220.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,125,339 |
T→G |
16.0% |
T491P (ACC→CCC) |
priA ← |
Primosome factor n' (replication factor Y) |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,125,339 | 0 | T | G | 16.0%
| 141.1
/ 2.6
| 75 | T491P (ACC→CCC) | priA | Primosome factor n' (replication factor Y) |
| Reads supporting (aligned to +/- strand): ref base T (24/34); new base G (7/9); total (32/43) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCT > NC_000913/4125115‑4125563
|
aGAAAACAGCCCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGT‑TCCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGcc < 1:595133/228‑1 (MQ=255)
aaaaaggagccgggtccctgtccgGTAATGCAACCAGGGTCCCGTCGGGAAAATGGTGACCTTTCGCCAGCATTTGGCT‑ACCAATCAAAACCCGCGCGCCGCCGCGAGGTTCTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGTGAAATGGGCGCGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCa < 2:553012/209‑1 (MQ=255)
gcgcCGTCCACGTCCAGTAATGCACCCAGCGTCACATCCGGGAAATGGTGCCCTTTTGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACg < 1:603475/228‑1 (MQ=255)
cgtccacgtccaGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGT‑ACCAATAAAAATCCGCGAGCGGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGAATGCCGGTCGTTACCGGAAATGGGCACTCCCGGGCAAAACGGCCGGGGCGCTCGGTCAAGCTGGTGGGCGACCACCCCCACCGGG‑Ac > 2:230901/1‑229 (MQ=255)
tccacgtccaGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGGATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACCACGCCGCGGGGGTCTGTTCAAACGGTTCGGGGCCCAGCCCCCCggggcgac > 2:549629/1‑225 (MQ=255)
ccccgcccgttatggacaCCAGCGCCCCATCCGGGAAATGGGGACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCGGGGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAg < 2:696355/212‑1 (MQ=255)
cccacgcccgTAATTCAACCACGGCCACAGCCGGGAAAGGGTGCCCTTGTGCCAGCATTTGTGT‑ACCAAGCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAg < 2:188604/220‑1 (MQ=255)
tGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGGGCGTCTGTTCAAGCTGTTCGGGGCCCGGCCCCCCGGGG‑GCACGGTGGGGGGAAccc > 1:314478/1‑228 (MQ=255)
gCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCCCGGGG‑ACCAGGTGCGTGGAACCg > 1:117250/1‑228 (MQ=255)
cAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGGAGAACGGCGCGAGCGTCCGTTCAAGCTGGTCGGTGGCCAACCCCCCGGGG‑GCCAGGGGCGGGGCAccacc > 1:320056/1‑226 (MQ=255)
ccAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGGCCAGCCCCCCGGGG‑ACAAGGGACGTGGAACCGCAggg > 1:753200/1‑228 (MQ=255)
aGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGAATCGCGGCCGATACGCGAAATGGGCACGCCGGGGAAAAACGGGGCGCGCGTCTTGTTAAGCGTTACGGGGCCCACCCCCACGGGGCACCCGG‑GCGGGGGACCGCacagaa > 2:448306/1‑224 (MQ=255)
ccgtccaaTCCGGGAAAGTGTGCCCTTTCTCCAGCATTTGTGG‑CCCAACCAAACCCCGCCGGCGGGCGGGATGTACTGCTG‑CCAGTTGCTGTGCCAGCGCCCCTTTGCGGCGGGGGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGa < 2:320056/219‑1 (MQ=255)
cGTCACATCCGGGAAATGGTTACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCCGGAGGGCCGGTTCCAGCTGTTCGGTGCCCACCCCCCCGCGG‑CCCGGGGGCGGGGAAcacccgggaggg > 2:405624/1‑218 (MQ=255)
cGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGAACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGGGCCCAGCCCCACGGGG‑ACCAGGGGCGGGGAACCGCAGGAAagg > 1:291864/1‑229 (MQ=255)
tCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTTT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGGCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGGGCGGCTGTTCAAACTGTTCGGTGCCCAGCCCCCCGGGG‑GCCAggggggggggacacgggaaggggc > 2:545400/1‑206 (MQ=255)
tCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCCCGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGGGCCCAGCCCCCCGGGG‑ACCAGGGGCGCGGAACCGCAGGAAGGGc > 1:181454/1‑228 (MQ=255)
aaTGGTGGCCTTTCCCCAGCATTTGGGT‑ACCAATCAAAAGCCGCGCGCCGCCGCGATGGACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCAc < 1:549629/229‑1 (MQ=255)
tgcgctcttCGCCAGCATTT‑TGTGACAAACCGAAACCCCCGTCCCCCCGGGATGTA‑GTCTGCCCAGTGGTTGTACCAGGGCCCCTGTGCGGCTGGGGGTATCGCGGTCGATGCGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGGTCAAGCTGTTCGGTGACCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCTGa < 2:456046/222‑1 (MQ=255)
gTGACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCTATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCCGGTGCGTGGAACCGCAGGAAGGGCACTGACGCGCGACCgg > 1:665345/1‑228 (MQ=255)
aCCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGGCAAATGGGCCCGCCGGGGCACAACGGCCCGAGCGCCTGTTCAAGCTCTTCGGGGCCCACCCCCCCGGGG‑GCCAGGTGCGCTGCACCGCCGGAAGGGCCCT‑GCGCGGGAcccggaccc > 2:113782/1‑222 (MQ=255)
ggcatctttttTGG‑ACCAACCAAAAGCCGCGCGCCGCCGCGATGTTCTTCTG‑CCAGTTGCTGTTCCCGGGCCCCTTTGCGGCTGGGGGTATCGCGGTCGATACGAGAAAGGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGt < 2:659650/222‑1 (MQ=255)
ccAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGcc > 2:158943/1‑146 (MQ=255)
ccAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGcc < 1:158943/146‑1 (MQ=255)
cAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGACCAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGCGCGTGGAACCGCAGGAAGGGCACTGGCCCGGCACCGGCCCCTGCCGGGCCCAGTGGGGGcgcgc > 1:692692/1‑225 (MQ=255)
aTCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGGCCCACCGGG‑GCCCGGGGCGTGGAACCGCAGGCAGGGCAACGGCGCGGCCCCGGCCGCCGAcgtccaccgtcgggggagcgga > 2:705918/1‑208 (MQ=255)
aTCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACg > 1:261685/1‑153 (MQ=255)
aTCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑GCCAGGTGCGTGGAACCGCAGGAAGGGCACCGGCCCGGCACCGGCCGCTGCCCGGCACAGGGGGGGGAccgcc > 2:731227/1‑228 (MQ=255)
aTCAAAATCCCCGCGCCGGCGGGAGGGACTTCGT‑GCAGTTGCTGTTCCCGCGCTCCTTTGCGGCTGGTGGTATCGCGGGCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCa < 2:564170/229‑1 (MQ=255)
aaaaTCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGa > 1:23059/1‑228 (MQ=255)
cgcgcCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑CCCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCCGCCTGTCACAGTGGTGGCAGCGCAGCTGGggctgc > 1:522759/1‑229 (MQ=255)
gggagttACTTCTG‑CCCGTTGCTGTTCCAGGGGCCCTTGGCGGCTGGTTGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGc < 1:414161/223‑1 (MQ=255)
ggtgtgtcTTGTG‑CCGTTTGCGGTGCCAGCGCCCCTTGGGGGGTGGTGGTATCGGGGTCGATACGAGAAATGGGCCCGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa < 2:117250/222‑1 (MQ=255)
gggggtctgtggg‑CCGGTTGGTGTTCCGTCGCCCCTTGGCGGCTGGGGGTGTCGCGGTGGTTCCGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa < 2:402258/217‑1 (MQ=255)
gcgcCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGGGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGGGTAGTAGGGATGGCAACGTGGGcg > 1:259742/1‑228 (MQ=255)
ccccTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑CCCAGGTGCGTGGAACCGCAGGAAGGGCACTCGCCCGGCCCCGGACGCCGACTCTCACCGGGGGGGCCGCCCGGGTGCGGCTGCGGCGTATGCCGCGTTGTGGAGTGACCTCCACGTGGGCAtt > 2:22113/1‑228 (MQ=255)
gtgggCTGGGGGTTCCGCGGGCGAGGAGTGAAATGGGCCCGCCGGGGAACAACGGCGGGGGCGTCTGGTCAAGCTGTGCGGGGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAAt < 2:663032/226‑1 (MQ=255)
gCGGGTGGTGGGTTCGGGGTCGATACGAGAAAGGGCCACGCCGGGGAACATCGGCGCGGGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCGCGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCCCCGGACGCTGACTGTCACAGTGGTGGCCGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATc < 2:314478/229‑1 (MQ=255)
tggtggTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGGGCCCAGCCCCACGGGG‑ACCAGGGGCGTGGAACCGCAGGAAGGGCACCGGCCCGGGCCCGGACGCTGACTGTCCCAGGGGGGGCAGCCCAGATGGGGCGGCCCGTCATGCCGCGTGGAGTAGGGATTGCAACGAGGGCATTTgggcacacagga > 2:14409/1‑219 (MQ=255)
ggtggtATCGGGGGCGATACGAGAAATGGGCCCGCCGGGGAACAGCGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCca < 1:104844/229‑1 (MQ=255)
ggtggtATCGCGTGCGAATCGGAAAACGGTCACGCCGGGGAAAAACGGGGCGTGGGTCTGTTCAAGGTGGTCGGTGCCCAGCCCCCGCGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCCCTGGCGCGGCCCCGGACGCTGACTGTCCCAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCca < 2:205601/229‑1 (MQ=255)
gtggtATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGAGGGTGCTGGGCCTGATGCAGCGGGTGGTGGTGATCGCAACGTGGGCATTCGGCAATCCAGCcac > 1:262276/1‑229 (MQ=255)
gtggtAGCGGGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGGGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCcac < 1:607104/229‑1 (MQ=255)
ggggtggcggggtggaggcGAGAAATGGGCACGCCGGGGAACAACGGCGCGGGCGTCTGTTCAAGCTGGTCGGTGCCCAGCCCCACGGGG‑AGCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCcac < 2:243969/211‑1 (MQ=255)
tggcggggtggtgaCGGGAAAGGGGCACGGCGGGGAACGAGGGGCGGGGCGGCTGTCCAAGCGGGTCGGTGCCCGGCCCCACGGGG‑ACCAGTTGCGTGGAACCGGAGGAGGGGCATGGGCGGGGCACCGGACGCTGATTGTCACAGTGTTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTTGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGt < 2:254435/215‑1 (MQ=255)
ttCGCGGTCGATTCGAGAAAGGGGCACGCCGGGGACCAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCTTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCg < 2:559222/228‑1 (MQ=255)
aTCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTCGTAGCGGTCGCAACGGGGACATTCGGCAATCCAGCCACAGTCg > 1:685374/1‑229 (MQ=255)
tgtcggtggttagagtgaaggggCACGGCGGGGAACACCGGCGGGAGGGTTGGTTCAAGCGGGTCGGTGCCCAGCCCCGCGGGG‑AACAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCTCCGGACGCTGAATGTCACAGTGGTGGCAGCGCAGATGGGGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCg < 2:344628/208‑1 (MQ=255)
tgcgggatgATAGGGGAAAGGGGCCCGTCGGGGAACAACGGGGCGAGGGTCGGTTCAAGGTGTTCGGGGCCCAGCCCCCGGGGG‑TCCAGGTGCATGGAACCGCAGGAAGGGCTCGGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCg < 2:80928/220‑1 (MQ=255)
gggttcggtgggagaCAGGGGCCCGCGGGGGGACACGGGGGCGGGCCTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCGGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTgg < 2:291864/218‑1 (MQ=255)
gTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGCCGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCCGCGTGTCGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGcccc > 1:243969/1‑216 (MQ=255)
gTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGCGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGGGGcac > 1:503660/1‑229 (MQ=255)
aTGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGGCACAGTGGGGGCGGCGCAGATGGTGCGGCGCCTGAGGCAGCGTGTAGTAGGGATCGCAACGAGGGCATTCGGCAATCCAGCCACAGTGGTGGCCcagcagagagggcg > 2:723258/1‑221 (MQ=255)
gtgCACGCCGGGGAACAACGGCGCGAGCGTCTGGTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTAATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCa < 1:450920/227‑1 (MQ=255)
cGCCGGGGAACAGAGGCGTGAGTGTCGGTTAAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGc < 1:456108/228‑1 (MQ=255)
cGGGGAACAGCGGGGCGAGCTTCTGTTGAGGTTGTGCGGGGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCAcg < 1:571936/229‑1 (MQ=255)
ggAACCAGGGCGCGGGCGTCTGTTCAGGCGGTTCGGGGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGGAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCAcggc < 2:262276/228‑1 (MQ=255)
acgagggcggcgagggttGTTCAAGCTGTTCGGTGCCCAGTCCTAGGGGG‑CCCAGGGGGGGGGAACCGCAGGAAGTGCAGTGGCGCGGGACCGGACGGTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGtt < 1:189502/212‑1 (MQ=255)
acgacGGCGCGGGGGTGTGTTCAAGCTGGTCGGGGCCCAGCCCCACGGGG‑CACAGGGGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGtt < 2:23059/226‑1 (MQ=255)
cGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTtag > 1:115100/1‑228 (MQ=255)
cGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGGGATCGCAACGTGGGCATTCGGCAATCCAGCCCCAGTCGGTGCACAGCGGTGCAGGGCCAAACCAAAGGCGGGTcaga > 2:27380/1‑229 (MQ=255)
cGGCGAGGGCGTGTGGTCAGGTAGTGCGGGCCCCAGCCCCCGGGGG‑ACCAGGTGCGTGGAACCGCAGTAAGGGCACTGGGGCGGCACCGGACGCTGACTGTCCCAGTGGTGGGAGCGCAGGTGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTaaga < 2:181129/229‑1 (MQ=255)
cgcgAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACCGCCGTGGCACAGCAGTGCAGGCGCAAAGCAAATGCGGTTtagg > 1:539431/1‑225 (MQ=255)
gAGCGTCTGTTCAAGGTGTTCGGTGCCCAGCCCCAGGGGT‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACGGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAgaga < 1:507436/229‑1 (MQ=255)
agtggttGTTCAAAGTGTTGGGGGCCCGGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGTAAGGGCACGGGCGCGGCCCCGGACGCTGACTGTCACAGGGGTGGCGGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGaa < 2:504908/223‑1 (MQ=255)
gCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCACCGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGGTAAGAAAAAGaa > 1:183811/1‑228 (MQ=255)
tgtggtcaatgtGTTCGGTGCCCCGCCCCCCGGGG‑CCCAGGTGCGTGGAACCGCGGGAAGGGCCCTGGCGCGGCACCGGACGCTGACTGTCCCAGTGGTGGCAGCGCAGATGGTGCGGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGAc < 2:82450/218‑1 (MQ=255)
tCTGTTCAATCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGAAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGAc < 1:547545/229‑1 (MQ=255)
tCTGTTCAAGCTGGTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGAc < 1:545400/229‑1 (MQ=255)
gTTCAAGGTGTTCGGGCCCCAGCCCCCCGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCAATGGCGCGGCACCGGACGGTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCt < 1:705434/228‑1 (MQ=255)
gcgtgtCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTAt < 1:127534/223‑1 (MQ=255)
ggtCGGGGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGGTCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCTGCCTCGGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGc < 1:113342/227‑1 (MQ=255)
gTTCGGTGCCCGGCCCCCGGGGG‑ACCCGTGGCGTGGAACGGCAGGAAGGGCACTGGGGGGGCACCGGACGCTGGATGTCCCAGGGGTGGCAGCGCAGATGGTGCTGCCCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGc < 2:170159/229‑1 (MQ=255)
gTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGc < 1:405624/229‑1 (MQ=255)
cGGTGCCCAGGCCCAAGGGG‑CACAGGGGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACGGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGACTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCt < 1:731228/228‑1 (MQ=255)
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AGAAAACAGCGCGCCGTCCACGTCCAGTAATGCAACCAGCGTCACATCCGGGAAATGGTGACCTTTCGCCAGCATTTGTGT‑ACCAATCAAAATCCGCGCGCCGCCGCGATGTACTTCTG‑CCAGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGG‑ACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGCAGTGCAGGCGCAAAGCCACGGCGGTTAAGAAAGAGAATGACCTGGTTATCAGCCT > NC_000913/4125115‑4125563
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
