Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A16 F20 I0 R1	52	51.1	1736300	96.9%	1682474	149.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	2,859,846	G→C	4.4%	intergenic (+22/+72)	ygbN → / ← rpoS	putative transporter/RNA polymerase, sigma S (sigma 38) factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	2,859,846	0	G	C	4.4%	250.9 / 2.9	81	intergenic (+22/+72)	ygbN/rpoS	putative transporter/RNA polymerase, sigma S (sigma 38) factor
Reads supporting (aligned to +/- strand): ref base G (46/31); new base C (2/2); total (48/33)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.15e-01

TCTGGATTGTGACCAAATATCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAAC  >  CP009273/2859700‑2859992

tCTGGGTTGGGACCAAATATCTGGGGGTGTCGGTAGCAGACGGTCTGAAAGCCTGGACGGTGTTAACGTCCATGCTCGGTTTTACCGGATTCTTAATTACCGGGTGGGTATGGGCGGTAATTTGACCTTAATAAAAAGGGCCGATgcgc                                                                                                                                                  <  1:374108/149‑1 (MQ=255)

tCTGGATTGTGACCAAATATCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGc                                                                                                                                                  >  2:342718/1‑149 (MQ=255)

 cTGGATTGTGACCAAATATCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCa                                                                                                                                                 >  2:117289/1‑149 (MQ=255)

   ggATTGTGACCAAATATCTGGGGTTGTCGGTAGCAGACGGTCTGAAAAACTGGACGGTGTTTACGCCCATTATGGGTTTTACCGGATTGTTGATCACGTGGGGCGTATGGGGGGGTATTTGTCCTTAATAAAAAGGACCGATGGGCATc                                                                                                                                               >  1:507572/1‑149 (MQ=255)

    gATTGTGGCTGAATATCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCg                                                                                                                                              <  2:178720/149‑1 (MQ=255)

      ttGTGACCAAATATCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTGATTTGACCTTAATAAAAAGGTCCGATGGGAATCGGa                                                                                                                                            >  2:107901/1‑149 (MQ=255)

        gtgCCCAAATATCAGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATCACCTGGTGCGTATGGCCGGTCATTTGACATCACTAAAACCGTCTGAAGCGCATcttcct                                                                                                                                          <  1:640421/149‑6 (MQ=255)

        gtgACCAAATATCTGGCGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGAcc                                                                                                                                          <  2:141612/149‑1 (MQ=255)

         tgACCAAATATCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCt                                                                                                                                         >  2:525703/1‑149 (MQ=255)

          gACCAAATATCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCtt                                                                                                                                        >  2:157335/1‑149 (MQ=255)

          gACCAAATATCTGGGGTTGTCGGGAGCGGGCTGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAGTTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCtt                                                                                                                                        <  1:378599/149‑1 (MQ=255)

             cAAGTATCTGGGGTTGTCGGTAGCAGACGGTCTGAAACCCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTa                                                                                                                                     <  1:165790/149‑1 (MQ=255)

             cAAATATCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTGCCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGCCCATCGGACCttttt                                                                                                                                     <  2:853416/149‑2 (MQ=255)

             cAAATATCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTa                                                                                                                                     <  2:79836/149‑1 (MQ=255)

               aaTATCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTGTTAtt                                                                                                                                   <  1:608702/149‑1 (MQ=255)

                 tatCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATtgt                                                                                                                                 >  1:661050/1‑149 (MQ=255)

                   tCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATCAAAAGGTCCGATGGGCGTCGGACCTTTTATTGTGc                                                                                                                               >  2:703384/1‑149 (MQ=255)

                    cTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGca                                                                                                                              <  1:780297/149‑1 (MQ=255)

                    cTGGGGTTGTCGGTAGCAGACGGTCAGAAACCCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGca                                                                                                                              >  2:449534/1‑149 (MQ=255)

                      gggtTTGTCGGTAGCAGACGGTCTGAAAACCGGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGGGCGTATGGGCGGTAATTTGACCTTAATAAAAATGTCCGATGGGCATCGGACCTTTTATTGTGcaca                                                                                                                            <  2:557591/149‑1 (MQ=255)

                      ggggTTGTCGGTAGCAGACTGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGcaca                                                                                                                            <  2:588983/149‑1 (MQ=255)

                      ggggTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGAATCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTAGTGTGcaca                                                                                                                            >  1:5647/1‑149 (MQ=255)

                       gggTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTCATTTGCCCTTAATAAAAAGGGCCGATGGGCATCGGACCTTTGATTGTGCCCAg                                                                                                                           >  2:187706/1‑149 (MQ=255)

                       gggTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATGAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAg                                                                                                                           >  2:616821/1‑149 (MQ=255)

                                             tGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTgaga                                                                                                     >  2:460854/1‑149 (MQ=255)

                                                    cTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCt                                                                                              >  2:800652/1‑149 (MQ=255)

                                                        aCAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGGCTGGCCTTTCt                                                                                          >  1:455472/1‑149 (MQ=255)

                                                        aCAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGCCCGGCCTTTCt                                                                                          >  1:72557/1‑149 (MQ=255)

                                                        aCAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCt                                                                                          >  1:867841/1‑149 (MQ=255)

                                                         cAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTg                                                                                         <  1:842968/149‑1 (MQ=255)

                                                          aGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGa                                                                                        <  2:852584/149‑1 (MQ=255)

                                                            tgtTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGGCa                                                                                      >  2:28086/1‑149 (MQ=255)

                                                            tgtTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGGCCGATGGGCATCGGACCTTTTATTGTGCACGGAAAAGGCCAGCGTCGCTTGAGACTGGCCTTTCTGACa                                                                                      >  2:142440/1‑149 (MQ=255)

                                                                   gACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTACTTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGctt                                                                               <  1:525703/149‑1 (MQ=255)

                                                                   gACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGctt                                                                               >  2:519643/1‑149 (MQ=255)

                                                                   gACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGctt                                                                               >  2:88589/1‑149 (MQ=255)

                                                                   gACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGctt                                                                               >  1:525443/1‑149 (MQ=255)

                                                                   gACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAAGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATActt                                                                               >  1:232397/1‑149 (MQ=255)

                                                                              gTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTACTATTCACTGAAAAGGCCGGCCTCGCTTGAGACTGGCCTTTCTGACAGCTGCTTACCTACTcgcg                                                                    >  1:94893/1‑149 (MQ=255)

                                                                                 ttACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGaa                                                                 <  2:700182/149‑1 (MQ=255)

                                                                                  tACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAAc                                                                <  2:335689/149‑1 (MQ=255)

                                                                                   aCCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGCTGCTTACTTACTCGCGGAACa                                                               >  2:823654/1‑149 (MQ=255)

                                                                                     cGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAgc                                                             >  1:382516/1‑149 (MQ=255)

                                                                                     cGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAgc                                                             >  2:719463/1‑149 (MQ=255)

                                                                                          tCTTAACTACCTGGTGCGTAGGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTc                                                        <  1:215054/149‑1 (MQ=255)

                                                                                            ttattacccctgcgCGTATGGGTGCGAAGTTCACCTTCATAATACCGTCCGCTGGGCATCGGACATCTTATTGTCCACCGAAAACGCCACCCTCGCTTGATACCGGCCTTTCTGACAGATGCTTACTTCCTCGCGGAACAGCGCTTCGa                                                      <  1:303834/136‑1 (MQ=255)

                                                                                            ttAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGa                                                      <  2:675352/149‑1 (MQ=255)

                                                                                              aaTTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGATTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAAAAGCGCTTCGata                                                    >  1:506709/1‑149 (MQ=255)

                                                                                              aaTTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGACATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGata                                                    >  1:278702/1‑149 (MQ=255)

                                                                                                   ccTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAg                                               <  2:867841/149‑1 (MQ=255)

                                                                                                          ggttatggcggcAATTTGACCTTACGAAAAAGGTCCGACGGCCATACGACCTTTTATTGTGCCCAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGc                                        <  2:789052/143‑1 (MQ=255)

                                                                                                           gTATGGGCGGTAATTTGACCTTAATAAAGAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTGGAGACTGGCCTTCCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCg                                       >  2:466276/1‑149 (MQ=255)

                                                                                                              tGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGttt                                    >  1:586846/1‑149 (MQ=255)

                                                                                                              tGGGCGGGAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGttt                                    <  2:19337/149‑1 (MQ=255)

                                                                                                                 gcggtaaccataCCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCa                                 >  1:228118/12‑149 (MQ=255)

                                                                                                                 gCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTCTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCa                                 <  1:616821/149‑1 (MQ=255)

                                                                                                                 gCGGTAAGTGGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACACGCGGAGCAGCGCTTCGATATTCAGCCCCTGCGTTTGCa                                 <  1:187706/149‑1 (MQ=255)

                                                                                                                  cGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATCTTCAGCCCCTGCGTTTGCAg                                >  1:788309/1‑149 (MQ=255)

                                                                                                                  cGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAg                                >  1:410182/1‑149 (MQ=255)

                                                                                                                    gTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGa                              >  1:137841/1‑149 (MQ=255)

                                                                                                                        tttGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGCTTGCAGGATTTc                          >  1:454182/1‑149 (MQ=255)

                                                                                                                           gACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTcgcg                       >  2:18972/1‑149 (MQ=255)

                                                                                                                              cTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCaa                    >  1:606661/1‑149 (MQ=255)

                                                                                                                              cTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCaa                    >  2:786687/1‑149 (MQ=255)

                                                                                                                              cTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTCCGTTTGCAGGACTTCCCGCaa                    >  2:215185/1‑149 (MQ=255)

                                                                                                                              cTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGAACAGAAAAGGCCAGCATCGATAGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCaa                    >  1:185376/1‑149 (MQ=255)

                                                                                                                               cacaataaaaGGTCCGATGCCCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCaaa                   >  1:305953/7‑149 (MQ=255)

                                                                                                                                 aataaAAGCGGCCGGTCGGCATGGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACg                 <  1:461592/149‑1 (MQ=255)

                                                                                                                                 aataaAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAAGAGCGCTTCGATATTCAGCCCCTGAGGTTGAAGGATGTCGCGCAAACg                 >  2:50017/1‑149 (MQ=255)

                                                                                                                                 aataaAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGCTATTAAGCCTCTGCGTTTGCAGGATTTCGCGCAAACg                 >  2:116462/1‑149 (MQ=255)

                                                                                                                                    taaaaGGTCCGATGCCCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGgcg              >  2:187082/2‑149 (MQ=255)

                                                                                                                                    aaaaaGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGgcg              <  1:785648/149‑1 (MQ=255)

                                                                                                                                      aaaTGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGACAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCa            >  1:553184/1‑149 (MQ=255)

                                                                                                                                      aaaGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCa            <  2:142885/149‑1 (MQ=255)

                                                                                                                                      aaaGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCa            <  2:142828/149‑1 (MQ=255)

                                                                                                                                      aaaGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCa            <  2:13756/149‑1 (MQ=255)

                                                                                                                                      aaaGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCa            >  2:127780/1‑149 (MQ=255)

                                                                                                                                      aaaGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCa            <  2:463290/149‑1 (MQ=255)

                                                                                                                                      aaaGGCCCGATGGGCATCGGACCTTTGATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCa            <  2:507572/149‑1 (MQ=255)

                                                                                                                                         ggTCCGTTGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGc         <  1:342718/149‑1 (MQ=255)

                                                                                                                                          gTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGcc        >  1:534104/1‑149 (MQ=255)

                                                                                                                                                tGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAAc  <  2:814299/149‑1 (MQ=255)

TCTGGATTGTGACCAAATATCTGGGGTTGTCGGTAGCAGACGGTCTGAAAACCTGGACAGTGTTAACGACCATTCTCGGTTTTACCGGATTCTTAATTACCTGGTGCGTATGGGCGGTAATTTGACCTTAATAAAAAGGTCCGATGGGCATCGGACCTTTTATTGTGCACAGAAAAGGCCAGCCTCGCTTGAGACTGGCCTTTCTGACAGATGCTTACTTACTCGCGGAACAGCGCTTCGATATTCAGCCCCTGCGTTTGCAGGATTTCGCGCAAACGGCGCAGGCCTTCAAC  >  CP009273/2859700‑2859992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A