Notes

Publication:

10.1101/327270

10.1371/journal.pcbi.1006213

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
13 1 3
14 1 3
15 1 3
16 1 3
17 1 3
18 1 3
19 1 2
20 1 2
8 8 22

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 159 265
Multiple Base Substitutions 0 0
Deletions 13 22
Insertions 7 8
Mobile Element Insertions 4 32
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 183 327

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F32 I0 R1 15 0 16.5 534746 98.2% 525120 146.6
A13 F32 I30 R1 8 0 41.2 1348942 97.0% 1308473 146.1
A13 F32 I40 R1 13 0 46.7 1511635 98.1% 1482913 146.1
A14 F34 I0 R1 25 0 22.0 717516 96.1% 689532 148.9
A14 F34 I30 R1 12 0 87.5 2905532 96.3% 2798027 145.0
A14 F34 I40 R1 11 0 55.0 1783796 96.5% 1721363 148.7
A15 F18 I0 R1 55 0 72.5 2455354 98.2% 2411157 146.2
A15 F18 I30 R1 5 0 106.6 3444073 97.7% 3364859 147.6
A15 F18 I40 R1 11 0 54.2 1757834 98.4% 1729708 146.1
A16 F20 I0 R1 52 0 51.1 1736300 96.9% 1682474 149.0
A16 F20 I30 R1 7 0 163.6 5345332 96.0% 5131518 148.7
A16 F20 I40 R1 12 0 45.4 1473824 96.3% 1419292 148.8
A17 F25 I0 R1 13 0 19.6 632057 98.4% 621944 146.2
A17 F25 I30 R1 8 0 66.0 2154293 97.5% 2100435 146.6
A17 F25 I40 R1 5 0 43.7 1427114 97.2% 1387154 146.6
A18 F25 I0 R1 17 0 19.2 625642 96.1% 601241 148.9
A18 F25 I30 R1 14 0 42.8 1391420 96.2% 1338546 148.9
A18 F25 I40 R1 4 0 120.6 3921210 96.6% 3787888 148.3
A19 F18 I30 R1 7 0 69.6 2274803 97.7% 2222482 146.1
A19 F18 I40 R1 9 0 113.1 3678852 98.0% 3605274 146.1
A20 F18 I30 R1 17 0 58.5 1916916 96.3% 1845990 148.8
A20 F18 I40 R1 7 0 47.3 1551690 96.0% 1489622 148.6

Mutation Needle Plot

Mutation Targets

Entries to show