mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 468,144 | Δ1 bp | coding (91/339 nt) | glnK → | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB |
| RA | 2,719,426 | T→C | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,860,429 | Δ1 bp | coding (482/993 nt) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,985,002 | G→T | D126Y (GAT→TAT) | ygeG → | SycD‑like chaperone family TPR‑repeat‑containing protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 345689 | 346960 | 1272 | 66 [65] | [64] 66 | prpC–[prpD] | prpC, [prpD] |
| * | * | ÷ | CP009273 | 683366–684507 | 684509 | 3–1144 | 66 [65] | [0] 155 | insH1 | insH1 |
| * | * | ÷ | CP009273 | 748582 | 749976 | 1395 | 67 [65] | [64] 67 | gltA | gltA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | NA (NA) | 186 (1.550) | 116/294 | 0.0 | NA | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 683479 | NA (NA) | 107 (0.920) | 77/284 | 0.4 | 100% | noncoding (1023/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 684510 = | 0 (0.000) | intergenic (‑41/+289) | insH1/lnt | IS5 transposase and trans‑activator/apolipoprotein N‑acyltransferase | |||||
| * | ? | CP009273 | = 1391495 | NA (NA) | 118 (0.980) | 82/294 | 0.3 | 97.5% | intergenic (+146/‑127) | insH1/ynaJ | IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein |
| ? | CP009273 | = 1972751 | 3 (0.030) | intergenic (‑297/‑483) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein | |||||
| * | ? | CP009273 | 1972748 = | 7 (0.060) | 122 (1.020) | 85/292 | 0.2 | 94.6% | intergenic (‑294/‑486) | flhD/uspC | flagellar class II regulon transcriptional activator, with FlhC/universal stress protein |
| ? | CP009273 | = 2283592 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 2269338 = | 5 (0.040) | 107 (0.890) | 76/294 | 0.5 | 95.5% | coding (587/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family |
| ? | CP009273 | = 3577555 | NA (NA) | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E | |||||
| * | ? | CP009273 | = 2269346 | 1 (0.010) | 115 (0.960) | 92/294 | 0.1 | 99.1% | coding (595/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family |
| ? | CP009273 | 3576788 = | NA (NA) | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||