mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 206 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 96 (0.800) | 28 (0.260) | 24/262 | 7.1 | 22.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 104 (0.970) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 92 (0.770) | 25 (0.230) | 22/262 | 7.7 | 21.5% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 101 (0.950) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 3567099 = | 137 (1.140) | 8 (0.070) | 8/282 | 15.0 | 5.8% | intergenic (‑237/+36) | glgB/asd | 1,4‑alpha‑glucan branching enzyme/aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding |
| ? | CP009273 | 3567117 = | 128 (1.110) | intergenic (‑255/+18) | glgB/asd | 1,4‑alpha‑glucan branching enzyme/aspartate‑semialdehyde dehydrogenase, NAD(P)‑binding | |||||
| * | ? | CP009273 | = 377667 | NA (NA) | 13 (0.110) | 8/284 | 15.1 | NA | coding (538/906 nt) | insD1 | IS2 transposase TnpB |
| ? | CP009273 | = 377674 | NA (NA) | coding (545/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | 4532499 = | 89 (0.740) | 8 (0.070) | 7/276 | 15.4 | 7.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 108 (0.960) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 3248646 | NA (NA) | 8 (0.070) | 7/282 | 15.7 | NA | noncoding (71/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | = 3248678 | NA (NA) | noncoding (103/103 nt) | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 2723314 = | NA (NA) | 17 (0.150) | 7/282 | 15.7 | NA | noncoding (1203/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2723331 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 2721250 = | NA (NA) | 16 (0.140) | 7/282 | 15.7 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721269 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 221460 | 44 (0.370) | 17 (0.150) | 7/282 | 15.7 | 28.7% | noncoding (1203/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2723331 = | NA (NA) | noncoding (1186/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 498909 | 101 (0.840) | 6 (0.050) | 6/272 | 16.0 | 6.0% | intergenic (‑215/+23) | ybaL/fsr | inner membrane putative NAD(P)‑binding transporter/putative fosmidomycin efflux system protein |
| ? | CP009273 | = 498914 | 93 (0.840) | intergenic (‑220/+18) | ybaL/fsr | inner membrane putative NAD(P)‑binding transporter/putative fosmidomycin efflux system protein | |||||