Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F104 I0 R1
|
106 |
58.2 |
1336546 |
90.2% |
1205564 |
141.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP000730 |
39,378 |
C→T |
100% |
D586N (GAT→AAT) |
mecA ← |
penicillin binding protein 2 prime |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP000730 | 39,378 | 0 | C | T | 100.0%
| 173.1
/ NA
| 53 | D586N (GAT→AAT) | mecA | penicillin binding protein 2 prime |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (27/26); total (27/26) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
AATAGCCATCATCATGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATCTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGTTAATATTGCCATT > CP000730/39241‑39513
|
aaTAGCCATCATCATGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCCTAAGATCTATAAATAttttt > 2:529822/1‑140 (MQ=255)
aaTAGCCATCATCATGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGAGCTATAAATAttttt > 1:83204/1‑140 (MQ=255)
aTAGCCATCATCATGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATAtattct < 2:8607/141‑1 (MQ=255)
catcattatGTTTGGATTATCTTTATCTTATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTAtg < 2:48410/141‑1 (MQ=255)
tcatcatGTTTGGATTATCTTTATCATACGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTAGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTAtg‑tg < 1:377719/141‑1 (MQ=255)
catGTTTGGATTCTCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCGTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAAATAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGtttt < 1:395986/141‑1 (MQ=255)
ttttttGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTtttat < 2:46771/139‑1 (MQ=255)
ttCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCAt < 1:54210/140‑1 (MQ=255)
aTCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCAt < 1:54047/141‑1 (MQ=255)
tCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTCTAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTGGCATa > 1:203931/1‑141 (MQ=255)
atGATATAAACCACCCCATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATACGATCTATAAATATTTTC‑TTATGCTGTTTTTTTTACGACCTGTTGCATACGAt > 2:442653/1‑141 (MQ=255)
gATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATcg > 2:174444/1‑140 (MQ=255)
gATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCa > 2:553834/1‑141 (MQ=255)
atatAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAg < 2:638776/141‑1 (MQ=255)
tataAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGt < 2:421977/141‑1 (MQ=255)
ttaAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGtt < 1:132505/140‑1 (MQ=255)
taACCCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATCAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTa < 2:500019/141‑1 (MQ=255)
caccCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGa > 1:423081/1‑141 (MQ=255)
caccCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGa > 1:423119/1‑141 (MQ=255)
aaTTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGCTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGat < 2:344429/141‑1 (MQ=255)
ttGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATAtt > 2:2810/1‑141 (MQ=255)
tGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAATTTTGCATATGATCTATAAATATTTTCTTTGTG‑TGCTTTGTTCCCTTCTTGTTGCATACCTTCAGTTAATGTATTGATAttt > 1:514082/1‑141 (MQ=255)
gTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATAtttt > 2:90156/1‑141 (MQ=255)
cAGTTTCTGCTTGTTTCATTTTGATTTCTGCAGTACCGTATTTTCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTgg < 2:374719/141‑1 (MQ=255)
tctcCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAaata < 1:90156/141‑1 (MQ=255)
aTTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTCTGGAAATAATATTTttcttc > 1:195763/1‑141 (MQ=255)
tttGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGAATACCATCAGTTAATAGATTGAGATTTTCTTTGGAAATAATATTTttcttcaa > 2:603307/1‑139 (MQ=255)
tttGAGTTCTGCAGTACCGGACTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCa > 2:240163/1‑141 (MQ=255)
ggTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACt < 1:295252/140‑1 (MQ=255)
ggTACCGGTTTTGCCAATTAAGTTTGCATAGGTTCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCTTCAGTTAATAGTTTGTTATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGttttt < 1:111845/140‑1 (MQ=255)
gTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTc < 2:652087/141‑1 (MQ=255)
gTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTc < 2:188135/141‑1 (MQ=255)
aCCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCgt > 2:631345/1‑141 (MQ=255)
cGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCgtgt > 1:16567/1‑141 (MQ=255)
ggATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCgtgtt > 1:278805/1‑140 (MQ=255)
ggATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTc < 1:111343/141‑1 (MQ=255)
aTTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTAAATTACG‑TGTTTTTCATATAACTAGATAAATAACCTATATATCTAGATTGCTATTTTCATTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCtt > 2:657729/1‑141 (MQ=255)
ttGCAAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTGACGACTTGTTGCATACCATCAGTTGATAGCATGATATTTTTTTTGGAAATAATATTTTTATTTCAAACTTTGTTTTTCTTGTCtttt < 2:325758/141‑1 (MQ=255)
cAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTtaata > 2:631939/1‑141 (MQ=255)
cAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTtaata > 2:234618/1‑141 (MQ=255)
ttATGTTTTCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCTTCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGt < 2:482490/141‑1 (MQ=255)
aaGTTTGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGa < 1:617284/141‑1 (MQ=255)
ttGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTATGTTTTTCGTGTCTTTTAATAAGTGAGGTg > 2:497153/1‑141 (MQ=255)
tGCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCTTGTCTTTTAATAAGTGAGGTGc > 1:588117/1‑141 (MQ=255)
tGCAAAAGAGCTATAAATATTTTCTTTATG‑TGTTTTATCTACGACTTGTTGCAGACCATCCGTTAATAGAGTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGc < 1:317075/141‑1 (MQ=255)
ggaTAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATATCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCg < 2:263114/139‑1 (MQ=255)
gCATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCg > 2:114052/1‑141 (MQ=255)
cATAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTAAGAATTGTTGAATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTACCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGt < 1:14492/141‑1 (MQ=255)
tAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTGATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATACGTAAGGTGCGTTa > 1:30060/1‑141 (MQ=255)
tAAGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGTTa > 1:225472/1‑141 (MQ=255)
aGATCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCCAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGTTAat > 1:124448/1‑141 (MQ=255)
tCTATAAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCAAAAATTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGTTAATAtt > 1:57781/1‑141 (MQ=255)
cTATAAATATTTTCTTTATG‑TGTTTTATTTACGGCTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGTTAATATTg > 1:134617/1‑141 (MQ=255)
ataAATATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGTTAATATTGcc < 1:24638/141‑1 (MQ=255)
aaTATTTTCTTTATG‑TGTTTTATTTACTACTTGTTGCATTCTATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGACTTTTAATAAGTGAGGTGCGTTAatatcatatga < 2:203931/141‑8 (MQ=255)
aaTATTTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGTTAATATTGCCatt > 2:538253/1‑141 (MQ=255)
|
AATAGCCATCATCATGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATCTTCTTTATG‑TGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGTTAATATTGCCATT > CP000730/39241‑39513
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
