Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F104 I0 R1	106	58.2	1336546	90.2%	1205564	141.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	1,929,946	G→A	50.9%	intergenic (‑1029/‑139)	USA300HOU_1794 ← / → USA300HOU_1796	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,929,946	0	G	A	50.9%	3.1 / 114.3	84	intergenic (‑1029/‑139)	USA300HOU_1794/USA300HOU_1796	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (20/21); new base A (27/15); total (47/37)
Fisher's exact test for biased strand distribution p-value = 1.87e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.43e-01

ATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATA  >  CP000730/1929806‑1930085

ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑‑TGCTA‑ATCATTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAAc                                                                                                                                           >  2:388492/1‑141 (MQ=255)

  aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACg                                                                                                                                          >  2:111394/1‑141 (MQ=255)

   ataGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTGAGTAGACg                                                                                                                                          >  2:122135/1‑141 (MQ=255)

   ataGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACg                                                                                                                                          <  2:290132/141‑1 (MQ=255)

    taatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                                        >  1:566730/4‑141 (MQ=255)

    taatagAGCCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCa                                                                                                                                        <  2:376500/138‑1 (MQ=255)

    gaatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGGACATTAC‑TTTGCTAATC‑AT‑‑TTGCGTTCACATCATAGCACCAGTGATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTGGTAAACgga                                                                                                                                        >  2:96135/4‑139 (MQ=255)

     agtagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCa                                                                                                                                        <  1:206125/141‑1 (MQ=255)

     aatagGGTCGCCTATATCTCAGGCGTCAATT‑‑GACGAACAGAGGCGGTGCA‑TTACTTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCCGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAATGCaa                                                                                                                                       <  1:469100/139‑1 (MQ=255)

     aatagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaa                                                                                                                                       <  1:613537/139‑1 (MQ=255)

      atagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaac                                                                                                                                      >  2:498300/2‑140 (MQ=255)

       tagAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAAt                                                                                                                                      <  1:407826/141‑1 (MQ=255)

       tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGCGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                                                                                                                     <  1:292403/141‑3 (MQ=255)

       tagAGTCGCCTATCCCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAAt                                                                                                                                      <  1:53886/141‑1 (MQ=255)

        agctgctccTATCCCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAAGC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                                                                                    <  1:77642/134‑4 (MQ=255)

        agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                                                                                    >  2:297534/1‑138 (MQ=255)

        agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                                                                                    >  2:571661/1‑138 (MQ=255)

        agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                                                                                    >  1:270264/1‑138 (MQ=255)

        agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                                                                                    <  1:277141/141‑4 (MQ=255)

        agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTTTGCGAATCAT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                                                                                                                    >  2:629138/1‑138 (MQ=255)

         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa                                                                                                                                   <  1:617180/141‑5 (MQ=255)

           gTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACaa                                                                                                                                  <  2:400338/141‑1 (MQ=255)

           gTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaata                                                                                                                                 <  1:14081/141‑7 (MQ=255)

            tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                                                                                                                <  1:618995/141‑8 (MQ=255)

            tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                                                                                                                >  2:500234/1‑134 (MQ=255)

            tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                                                                                                                >  1:162660/1‑134 (MQ=255)

            tCGCCTATCTCCCAGGCCTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                                                                                                                <  1:8777/141‑8 (MQ=255)

             cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                                                                                               >  2:379385/1‑133 (MQ=255)

             cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                                                                                               >  1:261191/1‑133 (MQ=255)

             cGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGGGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                                                                                                                               >  1:358919/1‑133 (MQ=255)

              gCCTATCTCTCAGGCGTCAATT‑‑GACGCGATGAGGGTGTGCA‑TTACTTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaacaatt                                                                                                                              <  2:300611/141‑10 (MQ=255)

              cccTATCTCTCGGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTTTGCAAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                                                                                              <  2:59850/140‑10 (MQ=255)

               ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTTTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                                                                                             >  2:173791/1‑131 (MQ=255)

               ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                                                                                             >  1:81893/1‑131 (MQ=255)

               ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                                                                                             >  2:641759/1‑131 (MQ=255)

               ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCACCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                                                                                             <  1:97113/141‑11 (MQ=255)

               ccTAGCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                                                                                             <  1:602673/141‑11 (MQ=255)

                cTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                                                                                                                            >  1:144924/1‑130 (MQ=255)

                 tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatttag                                                                                                                           >  2:164795/1‑129 (MQ=255)

                 tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                                                           >  1:508557/1‑129 (MQ=255)

                 tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTATTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                                                           >  2:13627/1‑129 (MQ=255)

                 tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                                                           >  1:93114/1‑129 (MQ=255)

                  ttctctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAT‑TTTGCTAATC‑AT‑‑TTTCGTTCACGTCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                                                          <  1:450432/140‑14 (MQ=255)

                  aTCTCTCAGGCGTCAATT‑‑GCCGAAGAGAGGAGGTGCA‑TTACTTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGGGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaatg                                                                                                                          >  1:172730/1‑128 (MQ=255)

                  aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                                                          >  2:580444/1‑128 (MQ=255)

                  aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑TTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                                                          >  1:168804/1‑128 (MQ=255)

                  aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                                                          >  1:568979/1‑128 (MQ=255)

                  aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACTTTGCTAATC‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                                                          >  2:577827/1‑128 (MQ=255)

                       tcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑AAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTCGACGCAATACAAAATAGGTTACag                                                                                                                      >  2:170845/1‑140 (MQ=255)

                           gCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAg                                                                                                                  >  2:526166/1‑141 (MQ=255)

                               cAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGc                                                                                                              >  1:464158/1‑141 (MQ=255)

                                aaTTTAGACGCAGAGAGGAGGTGTA‑TAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCa                                                                                                             <  2:454536/141‑1 (MQ=255)

                                  tttGGACGCAGACAGGAGGTGTA‑TCA‑GGTGACGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGGCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCAcc                                                                                                           <  2:63656/141‑1 (MQ=255)

                                                ggaggTGTA‑TAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCt                                                                                             >  2:26504/1‑141 (MQ=255)

                                                         ttaA‑GGTGATGCGT‑CT‑‑TTTCGTTCACATCCTAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATCGGCTAAGTAGACGCAATACAAAATCGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCg                                                                                     <  1:86504/140‑1 (MQ=255)

                                                              ggTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCaaa                                                                                 <  1:280709/141‑1 (MQ=255)

                                                                  aTGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTGATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGt                                                                             >  2:190265/1‑141 (MQ=255)

                                                                         aT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGcccctcgagagggc                                                                       >  2:624889/1‑128 (MQ=255)

                                                                         aT‑‑TTTCGTTCACATCATAGCACCAATCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAAAAGTGAgggg                                                                       >  1:248261/1‑141 (MQ=255)

                                                                               tctgtcatatcataGCACCAGTCATCATTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTg                                                                   <  2:663060/137‑1 (MQ=255)

                                                                                  ttCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGgtg                                                                <  1:338440/141‑1 (MQ=255)

                                                                                   tCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTGCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAAGCCCCTCGCTACCGCAAATAGTGAGGGGATTGgtgt                                                               <  2:97926/141‑1 (MQ=255)

                                                                                       atcatAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTCAGTAGACGCAATACAAAATAGGTGACATTTAGCCGCACCAATAAGAATCCCCTCACTTCCGCAAATAGTGAGGGGGTTGGTGTATaa                                                           >  2:135692/1‑141 (MQ=255)

                                                                                                   gTCACCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAACATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTAt                                               <  1:133167/141‑1 (MQ=255)

                                                                                                          gTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGtt                                        <  2:352569/141‑1 (MQ=255)

                                                                                                          gTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGtt                                        <  2:652215/141‑1 (MQ=255)

                                                                                                              cTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCt                                    >  1:226948/1‑141 (MQ=255)

                                                                                                               tgtgCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATCGCCGCACCAATAAAAATCCCCTCACTACCGCATATAGTGAGGGGTTTGGTGTATAAGTAAATACTTATTTTCGTTGTCtt                                   >  2:658784/1‑141 (MQ=255)

                                                                                                               tgtgCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCGGTCCCGGCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGGCtt                                   >  1:153638/1‑141 (MQ=255)

                                                                                                               tgtgCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCtt                                   >  2:615313/1‑141 (MQ=255)

                                                                                                                     aTTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATtat                             <  1:358101/141‑1 (MQ=255)

                                                                                                                              ttttCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAAt                    <  2:507327/141‑1 (MQ=255)

                                                                                                                                ttCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAGATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTGAATACTTATTTTGGTTGTCTTAATTCTACTGCTAtttt                  >  2:228367/1‑141 (MQ=255)

                                                                                                                                 tCTTATTGGCTAAGTAGACGCAAGACAAAATAGGTGACATATAGCCGCAGCAATAAAAATCCCCTCACTACCGCAAATTGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAAtttt                 <  2:344274/141‑1 (MQ=255)

                                                                                                                                  cTTATTGGCTAAGTGGACGTAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAAttttt                >  1:366889/1‑141 (MQ=255)

                                                                                                                                   ttATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTc               >  2:514281/1‑141 (MQ=255)

                                                                                                                                      ttGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTACTTTTTCttt            >  2:78355/1‑141 (MQ=255)

                                                                                                                                        ggCTAAGTGCGCGCAATACAAGATAGGTGACATATAGCCGCACCAATAAAAATCTCCTCGCTCCCGCAAATAGTGAGGGGCTTGGTGTATAAGCAAATCCTGATTTTCGTTGTCTTCATTATACTGCTATTTTTTCttttc          <  2:345156/141‑2 (MQ=255)

                                                                                                                                          cTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGt        >  1:23970/1‑141 (MQ=255)

                                                                                                                                             aggcgACGGAATAGAAGATAGGTAACATAGAGCGGCACCCAGAAAAATCCCCCCACTACCGCAAATAGTGAGGGGATTGGTTTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTaaa     <  2:378495/137‑1 (MQ=255)

                                                                                                                                             aGTAGACGCCATACAAAATATGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTaaa     <  2:378500/141‑1 (MQ=255)

                                                                                                                                             aGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATTCTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTaaa     <  1:112633/141‑1 (MQ=255)

                                                                                                                                              gTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTaaaa    >  2:299739/1‑141 (MQ=255)

                                                                                                                                              gTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCATCCCTACCGCGAATGGTGAGTAGATTGGTGTATCAGTAAATACTTGTGTTCGTGGTCTTAATTATACTGCTAATTTTTCTTTTTTTaaca    >  2:302260/1‑139 (MQ=255)

                                                                                                                                                aGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAata  <  2:333468/141‑1 (MQ=255)

ATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑GGTGATGCTT‑AT‑‑TTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAATTATACTGCTAATTTTTCTTTTTGTAAAATA  >  CP000730/1929806‑1930085

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A