Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A17 F109 I1 R1
|
28 |
33.5 |
644026 |
99.3% |
639517 |
151.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP000730 |
2,668,658 |
(T)8→7 |
intergenic (‑467/‑443) |
USA300HOU_2523 ← / → yicL |
transcriptional regulator/DMT superfamily drug/metabolite transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP000730 | 2,668,651 | 0 | T | . | 100.0%
| 74.5
/ NA
| 16 | intergenic (‑460/‑450) | USA300HOU_2523/yicL | transcriptional regulator/DMT superfamily drug/metabolite transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (10/6); total (10/6) |
TGTTTTTGTGCTGTGTTTATAAAACCGCACACTATATTCAAAAATAACTTATTACACATATATTTGCAATAAGATAATTAAAGTAGGATATTATTTTTAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTACTTTTTTTTAAAGCTAAATTTACATCAACTTAACAATGGTTGGTTATACTGAAGATGAAAATATTTAGTATAACTTAGTGGAGGCGATAAAGGTGCAATTGAGTCATTCCGTTAAAGTTGCAATTTCTATCTATTTAG > CP000730/2668508‑2668787
|
tgtttttgtGCTGTGTTTATAAAACCGCACACTATATTCAAAAATAACTTATTACACATATATTTGCAATAAGATAATTAAAGTAGGATATTATTTTTAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTACttttttta > 1:40218/1‑150 (MQ=255)
tgtgCTGTGTTTATAAAACCGCACACTATATTCAAAAATAACTTATTACACATATATTTGCAATAAGATAATTAAAGTAGGATATTATTTTTAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTa < 1:39799/151‑1 (MQ=255)
ataAAACCGCACACTATATTCAAAAATAACTTATTACACATATATTTGCAATAAGATAATTAAAGTAGGATATTATTTTTAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCaa > 2:233784/1‑151 (MQ=255)
ataAAACCGCACACTATATTCAAAAATAACTTATTACACATATATTTGCAATAAGATAATTAAAGTAGGATATTATTTTTAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCaa > 2:300030/1‑151 (MQ=255)
ataAAACCGCACACTATATTCAAAAATAACTTATTACACATATATTTGCAATAAGATAATTAAAGTAGGATATTATTTTTAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCaa > 2:1993/1‑151 (MQ=255)
aaaCCGCACACTATATTCAAAAATAACTTATTACACATATATTTGCAATAAGATAATTAAAGTAGGATATTATTTTTAGTTTTCTAATATGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCAACtt < 1:168284/151‑1 (MQ=255)
tatTCAAAAATAACTTATTACACATATATTTGCAATAAGATAATTAAAGTAGGATATTATTTTTAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCAACTTAACAAtgtttggt > 2:272565/1‑151 (MQ=255)
attaCACATATATTTGCAATAAGATAATTAAAGTAGGATATTATTTTTAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCAACTTAACAATGGTTGGTTATACTGAAGATGaaa > 1:31445/1‑151 (MQ=255)
caTATATTTGCAATAAGATAATTAAAGTAGGATATTATTTTTAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCAACTTAACAATGGTTGGTTATACTGAAGATGAAAATAttt > 2:86626/1‑151 (MQ=255)
tAAAGTAGGATATTATTTTTAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCAACTTAACAATGGTTGGTTATACTGAAGATGAAAATATTTAGTATAACTTAGTGGAGGCGAt < 2:286604/151‑1 (MQ=255)
natatTATTTTTAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCAACTTAACAATGGTTGGTTATACTGAAGATGAAAATATTTAGTATAACTTAGTGGAGGCGATAAAGGTGc > 2:53585/2‑151 (MQ=255)
tttAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCAACTTAACAATGGTTGGTTATACTGAAGATGAAAATATTTAGTATAACTTAGTGGAGGCGATAAAGGTGCAATTGAGTc > 1:173806/1‑151 (MQ=255)
aTAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCAACTTAACAATGGTTGGTTATACTGAAGATGAAAATATTTAGTATAACTTAGTGGAGGCGATAAAGGTGCAATTGAGTCATTCCGTTAAAg < 2:150486/151‑1 (MQ=255)
aTAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCAACTTAACAATGGTTGGTTATACTGAAGATGAAAATATTTAGTATAACTTAGTGGAGGCGATAAAGGTGCAATTGAGTCATTCCGTTAAAg > 2:93663/1‑151 (MQ=255)
tAGGAATGATGATAGTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCAACTTAACAATGGTTGGTTATACTGAAGATGAAAATATTTAGTATAACTTAGTGGAGGCGATAAAGGTGCAATTGAGTCATTCCGTTAAAGt < 2:40218/151‑1 (MQ=255)
gTCTATAGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCAACTTAACAATGGTTGGTTATACTGAAGATGAAAATATTTAGTATAACTTAGTGGAGGCGATAAAGGTGCAATTGAGTCATTCCGTTAAAGTTGCAATTtctatct < 1:258894/151‑1 (MQ=255)
aGGTTGAATCTTTAC‑TTTTTTTAAAGCTAAATTTACATCAACTTAACAATGGTTGGTTATACTGAAGATGAAAATATTTAGTATAACTTAGTGGAGGCGATAAAGGTGCAATTGAGTCATTCCGTTAAAGTTGCAATTTCTATCTATTTAg > 2:256669/1‑151 (MQ=255)
|
TGTTTTTGTGCTGTGTTTATAAAACCGCACACTATATTCAAAAATAACTTATTACACATATATTTGCAATAAGATAATTAAAGTAGGATATTATTTTTAGTTTTCTGATAGGAATGATGATAGTCTATAGGTTGAATCTTTACTTTTTTTTAAAGCTAAATTTACATCAACTTAACAATGGTTGGTTATACTGAAGATGAAAATATTTAGTATAACTTAGTGGAGGCGATAAAGGTGCAATTGAGTCATTCCGTTAAAGTTGCAATTTCTATCTATTTAG > CP000730/2668508‑2668787
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
