Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A21 F63 I1 R1	22	62.8	1386043	93.6%	1297336	141.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP000730	224,684	C→T	H276Y (CAT→TAT)	yleB →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	224,684	0	C	T	99.0%	318.7 / NA	98	H276Y (CAT→TAT)	yleB	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (50/45); total (52/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AAGCATAGGCATTTCACGTTATGTATTGAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCACATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGCACATGACAATGTGAATGT  >  CP000730/224546‑224817

aaGCATAGGCATTTCACGTTATGTATTGAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTAAAGACAAATATGTCCatat                                                                                                                                     >  1:293393/1‑141 (MQ=255)

          aTTTCACGTTATGTATTGAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAAc                                                                                                                           <  1:745619/141‑1 (MQ=255)

           tttCACGTTATGTATTGAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAAcc                                                                                                                          <  1:1297167/141‑1 (MQ=255)

           attCACGTTATGTATTGAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAAcc                                                                                                                          <  1:1095276/140‑1 (MQ=255)

               aCGTTATGTATTGAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAGACGTCAAGACAAATATGTCCACATTCGATTCAACCACAg                                                                                                                      >  1:158618/1‑141 (MQ=255)

               aCGTTATGTATTGAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAg                                                                                                                      >  1:785241/1‑141 (MQ=255)

               aCGTTATGTATTGAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAg                                                                                                                      >  1:943193/1‑141 (MQ=255)

                  ttATGGATTAAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCACAAAGTACGCCCGGACAATTCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGttt                                                                                                                   <  1:69473/141‑1 (MQ=255)

                        aTTGAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTacgacg                                                                                                             >  1:276064/1‑141 (MQ=255)

                        aTTGAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTacgacg                                                                                                             <  1:1345889/141‑1 (MQ=255)

                         ttGAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTacgacgc                                                                                                            >  1:1337608/1‑141 (MQ=255)

                           gaagaaGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTacgacgcaa                                                                                                          >  1:1374102/1‑141 (MQ=255)

                            aagaagTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTacgacgcaac                                                                                                         >  1:409982/1‑141 (MQ=255)

                               aagTTTTTGAGACGACAGTGACTTACCTTTTCTATATGTGTCATAAAGTACGACCGCATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATACTCGATTCAACCACAGTTTacgacgcaacgac                                                                                                      <  1:598815/141‑1 (MQ=255)

                                agggtgtGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCATAGTTTacgacgcaacgacg                                                                                                     <  1:729132/135‑1 (MQ=255)

                                  tgtTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTCCGCCACGATAATCCAGGAGATGTCATTCGTTCGGAAACGTCAAGACAAATATGACCATATTCGATTCAAGCACAGTTaacgacgcaacgacgct                                                                                                   >  1:40609/1‑140 (MQ=255)

                                  tgtTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAGATGTCATTCGTTCGGAAACAACATGACAAATATGTCCATATTCGCTTCAACCACAGTTTacgacgcaacgacgca                                                                                                   >  1:594671/1‑141 (MQ=255)

                                  tgtTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCACCCACAGTTTacgacgcaacgacgca                                                                                                   >  1:548/1‑141 (MQ=255)

                                  tgtTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTacgacgcaacgacgca                                                                                                   >  1:535311/1‑141 (MQ=255)

                                  tgtTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGGTTacgacgcaacgacgca                                                                                                   >  1:196908/1‑141 (MQ=255)

                                  tgtTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGAATCCACCACAGTGGacgacgcaacgacgca                                                                                                   >  1:704417/1‑141 (MQ=255)

                                  tgtTTGATACGACAGTGACTTACCTTCACGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTacgacgcaacgacgca                                                                                                   >  1:661615/1‑141 (MQ=255)

                                  tgtTGGATACGACAGTGACTTACCTTTTCGATCTGTGTCAGAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTcagacgcaacgccgca                                                                                                   >  1:985254/1‑141 (MQ=255)

                                   ttttGATACCACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCAt                                                                                                  <  1:925021/140‑1 (MQ=255)

                                     ttGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTg                                                                                                <  1:496591/141‑1 (MQ=255)

                                       gATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGt                                                                                              >  1:152802/1‑141 (MQ=255)

                                         tACGACAGTGACTTACCTTCTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTc                                                                                            <  1:929397/141‑1 (MQ=255)

                                          aCGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCa                                                                                           <  1:800891/141‑1 (MQ=255)

                                             aCAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCACGACAAATCTGTACATATTCGATTCAACCCAAGTTTACGCCGCCAGGCCGCATTGGTTCAGTa                                                                                        >  1:280193/1‑141 (MQ=255)

                                             aCAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGAAAACGTCAAGACAACTCTTGCGAACCACAAGACAACCAAAGATTACATCGCAACGACGCATTGGTTCAGTa                                                                                        >  1:1350060/1‑141 (MQ=255)

                                              cAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTaa                                                                                       >  1:917224/1‑141 (MQ=255)

                                              cAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTaa                                                                                       >  1:362977/1‑141 (MQ=255)

                                              cAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTaa                                                                                       >  1:1366042/1‑141 (MQ=255)

                                                gTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAAcc                                                                                     <  1:230853/141‑1 (MQ=255)

                                                gTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAAcc                                                                                     <  1:853772/141‑1 (MQ=255)

                                                  gACCTACCTTTTCGATAAGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGt                                                                                   <  1:427185/141‑1 (MQ=255)

                                                   aCTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGtt                                                                                  >  1:969659/1‑141 (MQ=255)

                                                   aCTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGtt                                                                                  >  1:225246/1‑141 (MQ=255)

                                                       aCCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCCTTGGTTCAGTAACCGTTGATa                                                                              >  1:1084662/1‑141 (MQ=255)

                                                        ccTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATaa                                                                             >  1:312510/1‑141 (MQ=255)

                                                         cTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAAt                                                                            <  1:1196133/141‑1 (MQ=255)

                                                          ttttCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAAtt                                                                           >  1:846725/1‑141 (MQ=255)

                                                                 tatGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATaa                                                                    <  1:1364970/141‑1 (MQ=255)

                                                                    gtgtCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACgg                                                                 <  1:696061/141‑1 (MQ=255)

                                                                    gcgtCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACgg                                                                 <  1:1051702/139‑1 (MQ=255)

                                                                      gtCATAAAGTCATCCCTGATAATCCTGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGAc                                                               <  1:641559/141‑1 (MQ=255)

                                                                      gtCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGAc                                                               <  1:1095546/141‑1 (MQ=255)

                                                                       tCATAAAGTACGCCCGTATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCTATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACg                                                              <  1:964999/141‑1 (MQ=255)

                                                                          tAAAGTACGCCCTGATAATCCTGAAAATGTAATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTa                                                           <  1:79175/141‑1 (MQ=255)

                                                                          tAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTa                                                           <  1:554856/141‑1 (MQ=255)

                                                                          tAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTa                                                           <  1:427148/141‑1 (MQ=255)

                                                                          aaaaGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTa                                                           <  1:879799/140‑1 (MQ=255)

                                                                           aaaGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTAt                                                          >  1:478612/1‑141 (MQ=255)

                                                                              gTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCaa                                                       >  1:391233/1‑141 (MQ=255)

                                                                              gTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCaa                                                       >  1:703703/1‑141 (MQ=255)

                                                                               tccGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAg                                                      <  1:409116/139‑1 (MQ=255)

                                                                                aCGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAgg                                                     >  1:184532/1‑141 (MQ=255)

                                                                                 cGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGc                                                    >  1:109484/1‑141 (MQ=255)

                                                                                    ccGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGaa                                                 >  1:539759/1‑141 (MQ=255)

                                                                                     cGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGaaa                                                >  1:893992/1‑141 (MQ=255)

                                                                                       gttAACCCGGAAAATGTCTTTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATg                                              <  1:361148/139‑1 (MQ=255)

                                                                                       gATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATg                                              <  1:1262367/141‑1 (MQ=255)

                                                                                       gATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATg                                              <  1:87731/141‑1 (MQ=255)

                                                                                       gATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATg                                              <  1:354118/141‑1 (MQ=255)

                                                                                           aTCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCaaa                                          >  1:714856/1‑141 (MQ=255)

                                                                                             ccGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAAtt                                        >  1:1292134/1‑141 (MQ=255)

                                                                                             ccGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGGTATCAAGGCGAAATGCAAAtt                                        >  1:485315/1‑141 (MQ=255)

                                                                                                 aaaaTGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTga                                    <  1:1046496/141‑1 (MQ=255)

                                                                                                 aaaaTGTCATTCGGTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGCCGCCATCTAGGCGAAATGCAAATTGTga                                    <  1:1014967/141‑1 (MQ=255)

                                                                                                   aaTGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTgaga                                  <  1:848287/141‑1 (MQ=255)

                                                                                                     tGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACa                                >  1:754734/1‑141 (MQ=255)

                                                                                                      gTCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATACTCTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACaa                               <  1:723948/141‑1 (MQ=255)

                                                                                                      gTCATTCGTTCGGAAACGTCAAGACAAATATGTCCAGATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACaa                               <  1:665417/141‑1 (MQ=255)

                                                                                                       tCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACgaa                              >  1:972796/1‑141 (MQ=255)

                                                                                                       tCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACaaa                              <  1:1045727/141‑1 (MQ=255)

                                                                                                       tCATTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACaaa                              >  1:972810/1‑141 (MQ=255)

                                                                                                         aTTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCCACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACg                            <  1:795955/141‑1 (MQ=255)

                                                                                                         aTTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATACTTTGAATAACGGACGTTATCAAGGCGGCATGCAAATTGTGAGACaacag                            >  1:1137263/1‑138 (MQ=255)

                                                                                                         aTTCGTTCGGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACg                            <  1:1332258/141‑1 (MQ=255)

                                                                                                              ttcgGAAACGTCAAGACAAATCTGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAg                       >  1:398177/1‑141 (MQ=255)

                                                                                                              ttcgGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAg                       >  1:398851/1‑141 (MQ=255)

                                                                                                                cgGAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTg                     >  1:1233014/1‑141 (MQ=255)

                                                                                                                  gAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGca                   <  1:746184/141‑1 (MQ=255)

                                                                                                                  gAAACGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGca                   <  1:1036827/141‑1 (MQ=255)

                                                                                                                    aaCGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCCACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGcaca                 <  1:1313224/141‑1 (MQ=255)

                                                                                                                     aCGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGATGAAATGTAGCATTGGTTCAGTTCCCGTGGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGAAAAACGCTGAGTGCACAt                >  1:656284/1‑141 (MQ=255)

                                                                                                                     aCGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACACACGCTTGATGCACAt                >  1:520832/1‑141 (MQ=255)

                                                                                                                     aCGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAAGGCAAATTGTGAGACAAACGCTTAGTGCCCAt                >  1:598509/1‑141 (MQ=255)

                                                                                                                     aCGTCAAGACAAATATGTCCATATTCGATTCAACAACAGTTTACGACGCAACGCCGCATTGGTTCAGTAACCGTTGATAATTTTAATTGCATCGTTTATCAAGGCGAAATACAAAGTGTGAGACAAACGATTAGTGCACAt                >  1:381158/1‑141 (MQ=255)

                                                                                                                      cGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGCACATg               >  1:693202/1‑141 (MQ=255)

                                                                                                                      cGTCAAGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGCACATg               >  1:1326383/1‑141 (MQ=255)

                                                                                                                           aGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGGGACAAACGCTTAGTGCACATGACAAt          >  1:277679/1‑141 (MQ=255)

                                                                                                                           aGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGCACATGACAAt          >  1:75914/1‑141 (MQ=255)

                                                                                                                           aGACAAATATGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGCACATGACAAt          >  1:265155/1‑141 (MQ=255)

                                                                                                                                  tatGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGCACATGACAATGTGAAtg   <  1:750830/141‑1 (MQ=255)

                                                                                                                                  aatGCCCATATTCGACTCAACCACAGTTTAAGACGCAACGACGCATTGGTTCAGTTACCGTTGCTACTGCCTGTTACTGAGGTTATAATTTGGAAGTGCAAAGTGTGAGACAAACGTTTAGTGCACATGAGGATGTGAAtg   <  1:1008091/140‑1 (MQ=255)

                                                                                                                                   atGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCCCTCTTATTAAAGGATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGCACATGACAATGTGAAtgt  <  1:1356378/141‑1 (MQ=255)

                                                                                                                                   atGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGCACATGACAATGTGAAtgt  <  1:307175/141‑1 (MQ=255)

                                                                                                                                   atGTCCATATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGCACCACTATATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGCACATGACAATGTGAAtgt  <  1:1000908/141‑1 (MQ=255)

AAGCATAGGCATTTCACGTTATGTATTGAAGAAGTGTTTGATACGACAGTGACTTACCTTTTCGATATGTGTCATAAAGTACGCCCGGATAATCCGGAAAATGTCATTCGTTCGGAAACGTCAAGACAAATATGTCCACATTCGATTCAACCACAGTTTACGACGCAACGACGCATTGGTTCAGTAACCGTTGATAATTTGAATAACGGACGTTATCAAGGCGAAATGCAAATTGTGAGACAAACGCTTAGTGCACATGACAATGTGAATGT  >  CP000730/224546‑224817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A