Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F110 I0 R1	49	71.1	1529928	95.4%	1459551	140.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	2,816,469	G→C	15.2%	Y620* (TAC→TAG)	sasA ←	serine‑threonine rich protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,816,469	0	G	C	15.2%	220.6 / 21.7	76	Y620* (TAC→TAG)	sasA	serine‑threonine rich protein
Reads supporting (aligned to +/- strand): ref base G (32/32); new base C (8/4); total (40/36)
Fisher's exact test for biased strand distribution p-value = 3.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGTTGGTGCTGTCGTATCCACAACATTTATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGTTTGATTGCCTACAGTTACAGTTGG  >  CP000730/2816331‑2816600

tGTTGGTGCTGTCGTATCCACAACATTTATTGTAAAAGTTGTCGTCGCTTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTa                                                                                                                                   <  1:747421/141‑1 (MQ=255)

 gTTGGTGCTGTCGTATCCACAACATTTATTGTAAAAGTTGTCGGCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCCTaa                                                                                                                                  >  1:400608/1‑141 (MQ=255)

  ttGGTGCTGTCGTATCCACAACATTTATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAAc                                                                                                                                 <  2:523199/141‑1 (MQ=255)

   tGGTGCTGTCGTATCCACAACATTTATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACt                                                                                                                                >  2:714298/1‑141 (MQ=255)

     gTGCTGTCGTATCCACAACATTTATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTa                                                                                                                              <  1:248161/141‑1 (MQ=255)

     gTGCTGTCGTATCCACAACATTTATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCCTAACTTa                                                                                                                              <  2:676488/141‑1 (MQ=255)

       gCTGTCGTATCCACAACATTTATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCCTAACTTAAt                                                                                                                            >  2:617569/1‑141 (MQ=255)

       gCTGTCGTATCCACAACATTTATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGACAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCATTGCACTATCCTAACTTAAt                                                                                                                            >  1:103033/1‑141 (MQ=255)

             gTATCCACAACATTTATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCtt                                                                                                                      <  2:105498/141‑1 (MQ=255)

             gTATCCACAACATTTATTGTAAAAGTTGTCGGCGATTTGTTATTTGCTTGGTCCGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCtt                                                                                                                      <  1:268756/141‑1 (MQ=255)

             gTATCCACAACATTTATTGGAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCtt                                                                                                                      <  2:22936/141‑1 (MQ=255)

                   ccaagtttgatttgaaaaGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAAt                                                                                                                <  2:372959/127‑1 (MQ=255)

                   acaacaTTTATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAAt                                                                                                                <  2:373529/141‑1 (MQ=255)

                     aacaTTGATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTTCACTATCGTAACTTAATCCGCTTGGTAATcc                                                                                                              <  1:107973/141‑1 (MQ=255)

                      acaTGTATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCt                                                                                                             <  2:761716/141‑1 (MQ=255)

                        aTTTATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGt                                                                                                           >  2:239178/1‑141 (MQ=255)

                           tATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGGACTATCCTCACTTAATCCGCTTGGTAATCCTGTAAc                                                                                                        >  1:624552/1‑141 (MQ=255)

                           tATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAAc                                                                                                        >  2:359454/1‑141 (MQ=255)

                               gTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCCTAACTTAATCCGCTTGGTAATCCTGTAACTGTa                                                                                                    <  1:113369/141‑1 (MQ=255)

                                 aaaaGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTAtt                                                                                                  >  2:468301/1‑141 (MQ=255)

                                 aaaaGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCCTAACTTAATCAGCTTGGTAATCCTGTAACTGTAtt                                                                                                  >  1:378942/1‑141 (MQ=255)

                                   aaGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTg                                                                                                >  1:61108/1‑141 (MQ=255)

                                   aaGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTg                                                                                                <  1:482295/141‑1 (MQ=255)

                                        gtcgtcGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTcaca                                                                                           >  2:112775/1‑141 (MQ=255)

                                        gtcgtcGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTcaca                                                                                           >  1:257801/1‑141 (MQ=255)

                                        gtcgtcGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGGTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTcaca                                                                                           <  1:711272/141‑1 (MQ=255)

                                            ccgATTCGTCATTTGCTTGCTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGCAATCCTGTAACTGTATTTGTCACAGTcc                                                                                       <  2:687565/140‑1 (MQ=255)

                                                tttGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCCTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGt                                                                                   >  2:592114/1‑141 (MQ=255)

                                                  tGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATACGCTTGGTAATGCTGTAACTGTATTTTTTAAAGTCCCAGTaa                                                                                 >  1:252410/1‑140 (MQ=255)

                                                   gTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAGTGATTGACTTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGCATTTGTCACAGTCCCAGTAcc                                                                                >  2:536956/1‑141 (MQ=255)

                                                     tATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCAt                                                                              <  1:83644/141‑1 (MQ=255)

                                                     tATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCAt                                                                              >  1:416210/1‑141 (MQ=255)

                                                     tATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGCATTTGTCACAGTCCCAGTACCAt                                                                              >  1:479408/1‑141 (MQ=255)

                                                     tATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTAGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTCATCCTGTAACTGTATTTGTCACTGTCCCAGTACCAt                                                                              >  1:324734/1‑141 (MQ=255)

                                                       tgtttttGGTCTGTAGACACAACTGTCGATGTTGATTGACCAATTTTTGTTCGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCGCTGCAGGTGTTTGTCACAGTCCCAGTACCATTa                                                                            <  2:502549/136‑1 (MQ=255)

                                                            ttGGGCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGt                                                                       <  1:226573/141‑1 (MQ=255)

                                                             tGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGtt                                                                      <  1:522579/141‑1 (MQ=255)

                                                             tGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGtt                                                                      >  1:48454/1‑141 (MQ=255)

                                                             tGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTATAACTGTATTTCTAACAATCCCAGttgctagattcctt                                                                      >  2:490320/1‑128 (MQ=255)

                                                                 cAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTTTTTGTCGCAGTCCCAGTACCATTATCCGTTGTAg                                                                  >  1:212318/1‑141 (MQ=255)

                                                                   gTAGACCCAACTGCCACTGTTGATTTACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGCTAATCCTGTAACTGTATTTGTCACAGTCACCGTACCATTATCCGTTGTAGTc                                                                <  2:292163/141‑1 (MQ=255)

                                                                   gTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTc                                                                <  1:761660/141‑1 (MQ=255)

                                                                     aGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCATTACCATTATCCGTTGTAGTcaa                                                              >  2:532115/1‑141 (MQ=255)

                                                                     aGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTcaa                                                              >  2:208455/1‑141 (MQ=255)

                                                                     aGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCCTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTcta                                                              >  2:743917/1‑139 (MQ=255)

                                                                       acacAACTTTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTcaata                                                            <  1:411556/141‑1 (MQ=255)

                                                                            aCTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTcaatacaata                                                       <  2:547542/141‑1 (MQ=255)

                                                                               gTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGa                                                    <  1:614114/141‑1 (MQ=255)

                                                                               gTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGa                                                    >  1:154620/1‑141 (MQ=255)

                                                                                tCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGAt                                                   >  1:242650/1‑141 (MQ=255)

                                                                                      ttgattgaCCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCGTTg                                             <  2:257801/141‑1 (MQ=255)

                                                                                       tgattgaCCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGt                                            >  1:572193/1‑141 (MQ=255)

                                                                                          ttgaCCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGtttt                                         <  1:259997/141‑1 (MQ=255)

                                                                                            gaCCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTCACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTAc                                       >  2:189997/1‑141 (MQ=255)

                                                                                                  tttttGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCCTTGTCCGTTGTAGTCAATACAATAGGACTGATTGTTTTACCCCCtt                                 >  1:628528/1‑141 (MQ=255)

                                                                                                   ttttCTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTGACCCACttt                                >  2:527187/1‑140 (MQ=255)

                                                                                                       gttgGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATg                            <  2:244698/141‑1 (MQ=255)

                                                                                                       gttgGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATg                            >  1:73871/1‑141 (MQ=255)

                                                                                                        ttgGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCGCTTCTATgg                           >  2:367294/1‑141 (MQ=255)

                                                                                                        ttgGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATgg                           <  1:468301/141‑1 (MQ=255)

                                                                                                        ttgGTGTCCCAATGATTGAATGCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATgg                           <  2:678479/141‑1 (MQ=255)

                                                                                                          ggTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGtt                         >  1:592917/1‑141 (MQ=255)

                                                                                                          ggTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGtt                         >  1:563288/1‑141 (MQ=255)

                                                                                                          ggTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGtt                         >  1:131683/1‑141 (MQ=255)

                                                                                                          ggTGTCCCAATGATTGAATTCGTTGCACTATCCTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGtt                         <  2:400608/141‑1 (MQ=255)

                                                                                                           gtgtCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGtttt                        >  1:51469/1‑141 (MQ=255)

                                                                                                                ccAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTCTGGTTTGATTg                   >  1:326/1‑141 (MQ=255)

                                                                                                                   aTGAGTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGTTTGATTGCCt                <  2:561290/141‑1 (MQ=255)

                                                                                                                       ttGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGTTTGATTGCCtacag            <  2:61108/141‑1 (MQ=255)

                                                                                                                       ttGAATTCGTTGCACTATCCTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTGCCATTATCCTTTGTAGTCAATACAATAGGATTCATAGTTTTACCCACTTCTATGGGTTGATTGCCtacag            >  1:91495/1‑141 (MQ=255)

                                                                                                                          aaTTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGTTTGATTGCCtacagtta         >  1:203985/1‑141 (MQ=255)

                                                                                                                           aTTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGTTTGATTGCCtacagttac        <  1:383781/141‑1 (MQ=255)

                                                                                                                            ttCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGTTTGATTGCCtacagttaca       <  1:239178/141‑1 (MQ=255)

                                                                                                                            ttCGTTGCACTATCCTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACCATAGGATTCATTGTTTTACCCACTTCTATGGTTTGATTGCCtacagttaca       <  2:103033/141‑1 (MQ=255)

                                                                                                                              cGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGTTTGATTGCCtacagttacagt     >  2:697819/1‑141 (MQ=255)

                                                                                                                                 tGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGTTTGATTGCCTACAGTTACAGTTgg  <  1:463886/141‑1 (MQ=255)

TGTTGGTGCTGTCGTATCCACAACATTTATTGTAAAAGTTGTCGTCGATTTGTTATTTGCTTGGTCAGTAGACACAACTGTCACTGTTGATTGACCAATTTTTGTTGGTGTCCCAATGATTGAATTCGTTGCACTATCGTAACTTAATCCGCTTGGTAATCCTGTAACTGTATTTGTCACAGTCCCAGTACCATTATCCGTTGTAGTCAATACAATAGGATTCATTGTTTTACCCACTTCTATGGTTTGATTGCCTACAGTTACAGTTGG  >  CP000730/2816331‑2816600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A