Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F70 I0 R1
|
629 |
86.3 |
3068034 |
98.1% |
3009741 |
142.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,089,197 |
A→T |
6.2% |
intergenic (‑69/+14) |
yeeZ ← / ← yoeB |
putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,089,197 | 0 | A | T | 6.2%
| 331.9
/ 9.6
| 96 | intergenic (‑69/+14) | yeeZ/yoeB | putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system |
| Reads supporting (aligned to +/- strand): ref base A (46/44); new base T (2/4); total (48/48) |
| Fisher's exact test for biased strand distribution p-value = 6.77e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.94e-01 |
Only 100 of 104 total aligned reads displayed.
TTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAGGGGTTCTGGCTTCCCCTTAC > NC_000913/2089051‑2089344
|
ttGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTat‑g > 4:175981/1‑149 (MQ=255)
ttGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTat‑g > 1:508098/1‑149 (MQ=255)
gCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTat‑gaa < 1:595143/149‑1 (MQ=255)
gCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTat‑gaa < 2:626206/149‑1 (MQ=255)
gCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAt‑gaatgaa < 2:132789/149‑1 (MQ=255)
gCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCATa‑gaatgaa < 1:164399/149‑1 (MQ=255)
ccTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑gaatgaat < 2:144263/149‑1 (MQ=255)
ccTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑gaatgaat < 4:404078/149‑1 (MQ=255)
cTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCATA‑gaatgaatt < 3:463025/149‑2 (MQ=255)
tCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCt > 4:434748/1‑149 (MQ=255)
tCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCt < 1:228401/149‑1 (MQ=255)
cgcTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGtt < 2:543833/149‑1 (MQ=255)
cgcTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTC‑ATAgaatgaattgtca < 3:113196/149‑6 (MQ=255)
gcTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTc < 2:508098/149‑1 (MQ=255)
aGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCaataat < 2:609069/149‑1 (MQ=255)
gACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGTGACCTTTTTCATCCGTTACCTCCTGATACACCATAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATGTGTTCAATAATGAt > 3:633712/1‑149 (MQ=255)
gACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGAt > 2:327999/1‑149 (MQ=255)
aCATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATa > 1:426391/1‑149 (MQ=255)
aTCGCCAGCGGCATGCCT‑ACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACg > 2:63507/1‑149 (MQ=255)
tCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACg > 1:454029/1‑149 (MQ=255)
cGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGa < 3:295447/149‑1 (MQ=255)
ccAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTat‑gaat < 2:38441/123‑1 (MQ=255)
ccAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTat‑gaat > 1:38441/1‑123 (MQ=255)
aGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCACCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACAtg < 2:454029/149‑1 (MQ=255)
gCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCATA‑gaatgaatt < 1:747376/122‑2 (MQ=255)
gCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCATA‑gaatgaatt > 2:747376/1‑121 (MQ=255)
aTGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCaa > 1:364158/1‑149 (MQ=255)
aaCCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGa < 3:659091/127‑1 (MQ=255)
aaCCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGa > 4:659091/1‑127 (MQ=255)
aaCCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCa > 3:473983/1‑149 (MQ=255)
accaccCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAg > 3:753629/1‑149 (MQ=255)
accaccCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAg < 4:290052/149‑1 (MQ=255)
accCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCaataat < 4:409981/121‑1 (MQ=255)
ccTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAAt < 1:680961/149‑1 (MQ=255)
aCCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAAtcgtc < 2:85081/149‑1 (MQ=255)
aCCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAAtcgtc < 4:131195/149‑1 (MQ=255)
cccGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAAgcgtct < 4:516808/149‑2 (MQ=255)
cGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGt > 1:319711/1‑149 (MQ=255)
gACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTa > 2:35852/1‑149 (MQ=255)
cGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGta < 4:472235/149‑1 (MQ=255)
gACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGtat > 2:418167/1‑149 (MQ=255)
aCCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTAAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGtata > 3:654818/1‑149 (MQ=255)
cTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATAcc > 4:676598/1‑149 (MQ=255)
tttttCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCa > 2:434801/1‑149 (MQ=255)
tCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACg > 1:508814/1‑149 (MQ=255)
cATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACgg > 3:605124/1‑149 (MQ=255)
tCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTg > 2:202468/1‑149 (MQ=255)
cGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGct > 3:700743/1‑149 (MQ=255)
tATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGctcct < 1:63507/149‑1 (MQ=255)
tcCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGt > 1:333797/1‑149 (MQ=255)
tcCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGt > 3:218814/1‑149 (MQ=255)
ccTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTa < 1:149038/149‑1 (MQ=255)
cTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTaa < 3:536281/149‑1 (MQ=255)
cTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTaa > 1:738730/1‑149 (MQ=255)
cacCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTc > 1:459087/1‑149 (MQ=255)
acCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCg < 4:146521/149‑1 (MQ=255)
ccTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCgg > 1:189838/1‑149 (MQ=255)
cTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCggg > 2:103577/1‑149 (MQ=255)
ttAGATCTATAAGGCTACGCTAGCGTATCATAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGa > 3:232430/1‑149 (MQ=255)
ttAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCgg > 2:645726/1‑147 (MQ=255)
ttAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCgg < 1:645726/147‑1 (MQ=255)
tAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGAc < 1:410250/149‑1 (MQ=255)
aTCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAg > 1:207456/1‑149 (MQ=255)
tataAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGaagccaga > 4:585303/1‑142 (MQ=255)
ataAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAAc > 2:764454/1‑149 (MQ=255)
taAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAAcc > 1:771634/1‑149 (MQ=255)
aaGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCATTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGACACCt < 2:587158/149‑1 (MQ=255)
aaGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCt < 1:133450/149‑1 (MQ=255)
tACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACaa < 4:103151/149‑1 (MQ=255)
aCGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACaaa < 1:327999/149‑1 (MQ=255)
gCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAAtt > 2:531471/1‑149 (MQ=255)
gCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGt > 1:496254/1‑149 (MQ=255)
gTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCt > 2:520164/1‑135 (MQ=255)
gTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCt < 1:520164/135‑1 (MQ=255)
aTCAAAACTGACAATTCATTCTAT‑GAATTAATCTGTTAAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGATTACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATGATGTTTCa > 4:149847/1‑149 (MQ=255)
aTCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCa < 1:495932/149‑1 (MQ=255)
tCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTc < 1:479853/118‑1 (MQ=255)
tCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTc > 2:479853/1‑118 (MQ=255)
tCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAg < 4:605124/149‑1 (MQ=255)
tCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAg < 2:279458/149‑1 (MQ=255)
cAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAgg < 2:319711/149‑1 (MQ=255)
cAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAgg < 2:480078/149‑1 (MQ=255)
cAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAgg < 1:661096/149‑1 (MQ=255)
aaaaCTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAggg > 3:589956/1‑149 (MQ=255)
aaaCTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTAt < 1:702685/139‑1 (MQ=255)
aaaCTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTAt > 2:702685/1‑139 (MQ=255)
aaaCTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAgggg > 2:424607/1‑149 (MQ=255)
aaCTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAGGGGt > 1:548706/1‑149 (MQ=255)
aCTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAGGGGtt < 2:189838/149‑1 (MQ=255)
cTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAGGGGTTc > 2:127642/1‑149 (MQ=255)
tGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAGGGGTTCt < 2:207456/149‑1 (MQ=255)
aCAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAGGGGTTCTgg < 2:281607/149‑1 (MQ=255)
cAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAGGGGTTCTGGc < 3:140814/149‑1 (MQ=255)
agattcattcATA‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACcgc < 1:519513/74‑1 (MQ=38)
attcattcATA‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAGGGGTTCTGGc > 2:590741/1‑147 (MQ=255)
tAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAGGGGTTCTGGCTTCCCCTTAc > 3:164631/1‑149 (MQ=255)
tAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAGGGGTTCTGGCTTCCCCTTAc < 2:738730/149‑1 (MQ=255)
tAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAGGGGTTCTGGCTTCCCCTTAc > 1:178879/1‑149 (MQ=255)
at‑gaatgaATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGc > 2:409000/1‑81 (MQ=255)
at‑gaatgaATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGc < 1:409000/81‑1 (MQ=255)
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TTGCCAGCCTCGCGCTGAAAGTGACATCGCCAGCGGCATGCCTAACCACCCTAACCCGACAATTGCGACCTTTTTCATCCGTTATCTCCTGATACACCTTAGATCTATAAGGCTACGCTAGCGTATCAAAACTGACAATTCATTCTAT‑GAATGAATCTGTTCAATAATGATAACGACATGCTGCAATGAGCAGTGAATCGTCGGTAACCGCGTATACCAGACGGTGCTCCTCTGTAATGCGTCGGGACCAGAAACCTGACAAATTATGTTTCAGGGGTTCTGGCTTCCCCTTAC > NC_000913/2089051‑2089344
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
