mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 6.1% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 6.1% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 18,678 | A→G | 6.2% | intergenic (+23/‑37) | nhaA → / → nhaR | sodium‑proton antiporter/transcriptional activator of nhaA |
| RA | 18,680 | A→T | 6.2% | intergenic (+25/‑35) | nhaA → / → nhaR | sodium‑proton antiporter/transcriptional activator of nhaA |
| RA | 18,681 | A→T | 6.0% | intergenic (+26/‑34) | nhaA → / → nhaR | sodium‑proton antiporter/transcriptional activator of nhaA |
| RA | 18,683 | C→T | 6.0% | intergenic (+28/‑32) | nhaA → / → nhaR | sodium‑proton antiporter/transcriptional activator of nhaA |
| RA | 53,272 | T→G | 5.3% | M49L (ATG→CTG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,275 | C→A | 5.1% | A48S (GCG→TCG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,279 | C→T | 5.2% | R46R (CGG→CGA) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,376 | G→A | 5.0% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 58,228 | T→G | 6.9% | intergenic (+49/‑246) | djlA → / → yabP | membrane‑anchored DnaK co‑chaperone, DNA‑binding protein/pseudogene, pentapeptide repeats‑containing |
| RA | 83,587 | A→C | 9.7% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 9.7% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 87,881 | A→G | 6.2% | intergenic (+33/‑147) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,884 | T→A | 5.2% | intergenic (+36/‑144) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,887 | C→T | 6.3% | intergenic (+39/‑141) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 100,158 | C→T | 5.8% | P172L (CCG→CTG) | murG → | N‑acetylglucosaminyl transferase |
| RA | 106,831 | T→A | 9.0% | I92N (ATT→AAT) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| RA | 111,013 | G→A | 10.5% | intergenic (+29/‑31) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 111,016 | T→C | 9.0% | intergenic (+32/‑28) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 120,964 | C→T | 5.4% | L196L (CTG→CTA) | aroP ← | aromatic amino acid transporter |
| RA | 120,967 | G→A | 5.5% | F195F (TTC→TTT) | aroP ← | aromatic amino acid transporter |
| RA | 164,557 | G→C | 5.7% | intergenic (+23/‑173) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,558 | T→A | 5.7% | intergenic (+24/‑172) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,620 | C→T | 10.0% | intergenic (+86/‑110) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,621 | A→G | 10.0% | intergenic (+87/‑109) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 192,573:1 | +G | 7.8% | coding (719/726 nt) | pyrH → | uridylate kinase |
| RA | 192,579 | A→T | 7.7% | *242L (TAA→TTA) | pyrH → | uridylate kinase |
| RA | 207,483 | A→C | 6.4% | V786V (GTA→GTC) | dnaE → | DNA polymerase III alpha subunit |
| RA | 207,486 | G→T | 5.6% | M787I (ATG→ATT) | dnaE → | DNA polymerase III alpha subunit |
| RA | 208,552 | T→A | 7.6% | L1143I (TTA→ATA) | dnaE → | DNA polymerase III alpha subunit |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 285,882 | T→G | 6.3% | I163S (ATC→AGC) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 285,887 | C→A | 6.4% | L165M (CTG→ATG) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 289,256 | G→C | 5.7% | intergenic (‑94/+45) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 289,257 | T→A | 5.9% | intergenic (‑95/+44) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 292,302 | C→G | 7.1% | intergenic (+71/+20) | yagJ → / ← yagK | CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| RA | 298,399 | C→T | 5.5% | V110I (GTT→ATT) | paoD ← | moco insertion factor for PaoABC aldehyde oxidoreductase |
| RA | 314,255 | T→C | 8.9% | intergenic (‑450/‑102) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 314,258 | G→A | 9.3% | intergenic (‑453/‑99) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 327,213 | G→C | 6.3% | S12* (TCA→TGA) | betA ← | choline dehydrogenase, a flavoprotein |
| RA | 336,866 | G→C | 5.9% | G30A (GGC→GCC) | yahF → | putative NAD(P)‑binding succinyl‑CoA synthase |
| RA | 373,332 | C→G | 5.7% | P138A (CCA→GCA) ‡ | mhpF → | acetaldehyde‑CoA dehydrogenase II, NAD‑binding |
| RA | 373,333 | C→G | 5.7% | P138R (CCA→CGA) ‡ | mhpF → | acetaldehyde‑CoA dehydrogenase II, NAD‑binding |
| RA | 383,897 | C→T | 8.9% | M13I (ATG→ATA) ‡ | yaiP ← | putative family 2 glycosyltransferase |
| RA | 383,898 | A→G | 7.7% | M13T (ATG→ACG) ‡ | yaiP ← | putative family 2 glycosyltransferase |
| RA | 385,724 | T→A | 6.4% | W165R (TGG→AGG) | tauA → | taurine ABC transporter periplasmic binding protein |
| RA | 402,127 | A→G | 5.4% | S127S (TCA→TCG) | phoA → | bacterial alkaline phosphatase |
| RA | 403,182 | T→A | 5.0% | intergenic (+20/‑99) | phoA → / → psiF | bacterial alkaline phosphatase/PsiF family protein |
| RA | 403,183 | T→A | 5.3% | intergenic (+21/‑98) | phoA → / → psiF | bacterial alkaline phosphatase/PsiF family protein |
| RA | 403,187 | G→A | 6.3% | intergenic (+25/‑94) | phoA → / → psiF | bacterial alkaline phosphatase/PsiF family protein |
| RA | 443,022 | G→A | 14.7% | intergenic (+25/+29) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 443,023 | T→C | 14.9% | intergenic (+26/+28) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 464,354 | C→A | 9.1% | intergenic (+46/‑48) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,356 | A→T | 9.1% | intergenic (+48/‑46) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,358 | T→G | 8.8% | intergenic (+50/‑44) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 473,176 | A→G | 5.5% | T71A (ACG→GCG) | amtB → | ammonium transporter |
| RA | 475,971 | C→G | 12.0% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 12.0% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 508,748 | C→A | 5.3% | intergenic (+189/+127) | ybaQ → / ← copA | putative DNA‑binding transcriptional regulator/copper transporter |
| RA | 508,754 | T→G | 5.4% | intergenic (+195/+121) | ybaQ → / ← copA | putative DNA‑binding transcriptional regulator/copper transporter |
| RA | 543,091 | G→C | 8.7% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 8.6% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 569,160 | G→T | 7.4% | D87Y (GAC→TAC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 569,161 | A→C | 6.6% | D87A (GAC→GCC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 595,519 | T→A | 7.9% | intergenic (‑76/‑81) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 595,520 | T→A | 7.9% | intergenic (‑77/‑80) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 603,391 | C→G | 8.8% | intergenic (+56/+25) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,393 | T→A | 8.5% | intergenic (+58/+23) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,395 | C→G | 8.7% | intergenic (+60/+21) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 705,916 | T→C | 7.0% | intergenic (+26/‑177) | nagE → / → glnS | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase |
| RA | 705,917 | G→A | 6.9% | intergenic (+27/‑176) | nagE → / → glnS | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase |
| RA | 707,926 | G→T | 6.6% | intergenic (+169/‑408) | glnS → / → chiP | glutamyl‑tRNA synthetase/chitoporin, uptake of chitosugars |
| RA | 710,170 | C→T | 8.0% | intergenic (+54/+30) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 710,173 | A→G | 7.9% | intergenic (+57/+27) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 713,195 | G→A | 9.8% | R70H (CGC→CAC) | seqA → | negative modulator of initiation of replication |
| RA | 713,200 | A→T | 9.6% | M72L (ATG→TTG) | seqA → | negative modulator of initiation of replication |
| RA | 713,205 | T→C | 9.4% | R73R (CGT→CGC) | seqA → | negative modulator of initiation of replication |
| RA | 756,643 | T→A | 8.1% | I246N (ATT→AAT) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 770,679 | G→T | 9.5% | intergenic (+68/‑779) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,682 | A→C | 9.0% | intergenic (+71/‑776) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 774,356 | C→G | 8.0% | P16P (CCC→CCG) | ybgE → | putative inner membrane protein in cydABX‑ybgE operon |
| RA | 774,358 | T→A | 7.9% | L17Q (CTG→CAG) | ybgE → | putative inner membrane protein in cydABX‑ybgE operon |
| RA | 781,668 | C→T | 6.0% | intergenic (+16/‑417) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,670 | A→T | 6.0% | intergenic (+18/‑415) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,672 | A→G | 6.0% | intergenic (+20/‑413) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 786,613 | C→A | 7.1% | A327A (GCC→GCA) | aroG → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible |
| RA | 786,614 | T→G | 6.9% | C328G (TGC→GGC) | aroG → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, phenylalanine repressible |
| RA | 787,780 | A→G | 6.8% | intergenic (‑185/+17) | gpmA ← / ← galM | phosphoglyceromutase 1/aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase |
| RA | 787,782 | G→C | 7.0% | intergenic (‑187/+15) | gpmA ← / ← galM | phosphoglyceromutase 1/aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase |
| RA | 787,784 | C→T | 7.0% | intergenic (‑189/+13) | gpmA ← / ← galM | phosphoglyceromutase 1/aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase |
| RA | 790,931 | C→G | 9.5% | W33C (TGG→TGC) | galT ← | galactose‑1‑phosphate uridylyltransferase |
| RA | 832,371 | T→A | 6.1% | intergenic (+135/+97) | rhlE → / ← ybiA | ATP‑dependent RNA helicase/DUF1768 family protein |
| RA | 832,372 | T→A | 6.1% | intergenic (+136/+96) | rhlE → / ← ybiA | ATP‑dependent RNA helicase/DUF1768 family protein |
| RA | 832,378 | G→T | 6.6% | intergenic (+142/+90) | rhlE → / ← ybiA | ATP‑dependent RNA helicase/DUF1768 family protein |
| RA | 832,379 | C→T | 6.5% | intergenic (+143/+89) | rhlE → / ← ybiA | ATP‑dependent RNA helicase/DUF1768 family protein |
| RA | 850,993 | T→C | 9.4% | intergenic (+28/+21) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,995 | T→G | 9.4% | intergenic (+30/+19) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,996 | C→A | 9.3% | intergenic (+31/+18) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,998 | G→A | 9.3% | intergenic (+33/+16) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 857,576 | T→C | 7.6% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 7.5% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 7.5% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 867,717 | G→C | 7.5% | L66F (TTG→TTC) | gsiA → | glutathione ABC transporter ATPase |
| RA | 867,718 | G→C | 7.5% | E67Q (GAA→CAA) | gsiA → | glutathione ABC transporter ATPase |
| RA | 887,392 | T→A | 5.7% | intergenic (‑53/‑31) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 887,393 | T→A | 5.6% | intergenic (‑54/‑30) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 892,455 | G→C | 12.5% | V163V (GTG→GTC) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,457 | T→A | 12.6% | I164N (ATT→AAT) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,459 | G→C | 12.7% | D165H (GAC→CAC) | rimK → | ribosomal protein S6 modification protein |
| RA | 899,656 | T→C | 7.3% | intergenic (+11/+188) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein |
| RA | 915,080 | G→C | 11.9% | intergenic (‑223/+272) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 915,081 | G→C | 11.9% | intergenic (‑224/+271) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 922,314:1 | +C | 11.1% | intergenic (+21/+52) | macB → / ← cspD | macrolide ABC transporter peremase/ATPase/inhibitor of DNA replication, cold shock protein homolog |
| RA | 940,751 | T→C | 10.2% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 940,754 | G→A | 10.5% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 958,769 | C→G | 8.5% | intergenic (+28/‑43) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,771 | A→T | 8.5% | intergenic (+30/‑41) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,773 | C→G | 8.5% | intergenic (+32/‑39) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 975,700 | G→T | 5.3% | D27Y (GAC→TAC) ‡ | mukE → | chromosome condensin MukBEF, MukE localization factor |
| RA | 975,701 | A→C | 5.5% | D27A (GAC→GCC) ‡ | mukE → | chromosome condensin MukBEF, MukE localization factor |
| RA | 986,410 | A→C | 6.5% | S191S (TCT→TCG) ‡ | ompF ← | outer membrane porin 1a (Ia;b;F) |
| RA | 986,411 | G→T | 5.4% | S191Y (TCT→TAT) ‡ | ompF ← | outer membrane porin 1a (Ia;b;F) |
| RA | 987,560 | G→C | 7.9% | intergenic (‑578/+25) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,561 | G→C | 8.0% | intergenic (‑579/+24) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 993,254 | A→G | 6.8% | intergenic (+20/+23) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,255 | A→C | 6.7% | intergenic (+21/+22) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,258 | G→T | 6.8% | intergenic (+24/+19) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 993,259 | C→T | 7.1% | intergenic (+25/+18) | pepN → / ← ssuB | aminopeptidase N/aliphatic sulfonate ABC transporter ATPase |
| RA | 1,004,741 | T→G | 5.2% | intergenic (+84/‑27) | ycbF → / → pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,004,746 | C→A | 5.3% | intergenic (+89/‑22) | ycbF → / → pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,015,912 | T→A | 5.6% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,018,983 | A→T | 9.7% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 8.5% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,041,937 | T→G | 7.0% | intergenic (+22/+93) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,041,940 | C→A | 6.1% | intergenic (+25/+90) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,048,429 | C→T | 6.5% | W88* (TGG→TAG) ‡ | gfcC ← | putative O‑antigen capsule production periplasmic protein |
| RA | 1,048,430 | A→G | 6.5% | W88R (TGG→CGG) ‡ | gfcC ← | putative O‑antigen capsule production periplasmic protein |
| RA | 1,052,257 | C→T | 10.9% | intergenic (+17/+32) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,260 | T→C | 10.4% | intergenic (+20/+29) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,261 | G→A | 10.5% | intergenic (+21/+28) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,264 | A→G | 10.4% | intergenic (+24/+25) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,075,515 | G→T | 6.1% | A1123E (GCG→GAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,075,518 | A→C | 6.0% | L1122R (CTC→CGC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,113,544 | G→A | 5.7% | intergenic (+138/‑35) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,546 | T→A | 5.9% | intergenic (+140/‑33) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,548 | T→C | 5.8% | intergenic (+142/‑31) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,129,394 | G→C | 9.6% | intergenic (+20/+20) | murJ → / ← flgN | putative lipid II flippase/export chaperone for FlgK and FlgL |
| RA | 1,138,428 | G→C | 5.2% | A17A (GCG→GCC) | flgK → | flagellar hook‑filament junction protein 1 |
| RA | 1,141,148 | C→T | 7.0% | intergenic (+162/+34) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,141,150 | G→A | 7.0% | intergenic (+164/+32) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,141,151 | T→C | 7.0% | intergenic (+165/+31) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,141,153 | A→G | 7.0% | intergenic (+167/+29) | flgL → / ← rne | flagellar hook‑filament junction protein/endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,147,980 | G→T | 7.1% | K120N (AAG→AAT) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,986 | G→C | 7.0% | L122L (CTG→CTC) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,987 | G→C | 7.2% | E123Q (GAG→CAG) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,993 | A→C | 9.3% | I125L (ATT→CTT) | plsX → | putative phosphate acyltransferase |
| RA | 1,151,280 | T→A | 5.7% | V204D (GTT→GAT) ‡ | fabG → | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase |
| RA | 1,151,281 | T→A | 5.7% | V204V (GTT→GTA) ‡ | fabG → | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase |
| RA | 1,151,873 | T→A | 6.2% | intergenic (+22/‑66) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,151,874 | T→A | 6.2% | intergenic (+23/‑65) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,155,575 | G→A | 7.0% | R151H (CGT→CAT) | tmk → | thymidylate kinase |
| RA | 1,159,335 | G→T | 8.2% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 8.0% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,169,380 | T→C | 10.0% | intergenic (+50/+32) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,382 | C→G | 10.0% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,384 | G→A | 9.9% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,174,077 | G→A | 9.6% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 9.5% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,196,803 | A→C | 5.9% | intergenic (+430/+64) | icd → / ← ymfD | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,211,610 | A→G | 5.9% | intergenic (+33/+70) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,612 | A→T | 6.2% | intergenic (+35/+68) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,211,614 | C→T | 6.2% | intergenic (+37/+66) | icdC → / ← iraM | pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion/RpoS stabilzer during Mg starvation, anti‑RssB factor |
| RA | 1,226,832 | T→G | 7.6% | F78C (TTT→TGT) | ycgJ → | uncharacterized protein |
| RA | 1,226,835 | C→A | 6.9% | T79K (ACA→AAA) | ycgJ → | uncharacterized protein |
| RA | 1,227,051 | G→C | 8.2% | intergenic (+83/+20) | ycgJ → / ← pliG | uncharacterized protein/periplasmic inhibitor of g‑type lysozyme |
| RA | 1,227,052 | A→T | 8.2% | intergenic (+84/+19) | ycgJ → / ← pliG | uncharacterized protein/periplasmic inhibitor of g‑type lysozyme |
| RA | 1,227,053 | G→C | 8.2% | intergenic (+85/+18) | ycgJ → / ← pliG | uncharacterized protein/periplasmic inhibitor of g‑type lysozyme |
| RA | 1,248,064 | T→A | 5.4% | K351* (AAA→TAA) | dhaM ← | putative dihydroxyacetone‑specific PTS enzymes: HPr, EI components |
| RA | 1,260,904 | A→G | 6.7% | intergenic (‑101/+24) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| JC JC | 1,293,196 | IS5 (–) +4 bp | 5.3% | intergenic (‑274/‑328) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,787 | G→A | 7.5% | intergenic (+19/+34) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,306,788 | T→C | 7.8% | intergenic (+20/+33) | oppF → / ← yciU | oligopeptide ABC transporter ATPase/UPF0263 family protein |
| RA | 1,311,830 | A→G | 10.4% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 10.3% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,324,837 | A→C | 6.3% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 5.8% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 6.0% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,335,681 | T→C | 6.8% | intergenic (+223/‑150) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,335,684 | G→A | 7.0% | intergenic (+226/‑147) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,344,033 | A→G | 12.6% | L105P (CTG→CCG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,036 | G→C | 12.7% | T104S (ACT→AGT) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,039 | C→T | 12.8% | R103Q (CGG→CAG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,375,064 | C→T | 6.1% | G34G (GGC→GGT) | ycjQ → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 1,375,067 | A→G | 6.9% | A35A (GCA→GCG) | ycjQ → | putative Zn‑dependent NAD(P)‑binding oxidoreductase |
| RA | 1,381,918 | A→C | 5.2% | intergenic (+16/‑29) | ycjV → / → ompG | pseudogene; putative ATP‑binding component of a transport system/outer membrane porin G |
| RA | 1,410,986 | A→G | 6.9% | intergenic (+102/+27) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,990 | T→A | 6.7% | intergenic (+106/+23) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,991 | T→A | 6.7% | intergenic (+107/+22) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,995 | C→T | 6.5% | intergenic (+111/+18) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,413,029 | G→C | 6.8% | S69R (AGC→AGG) ‡ | intR ← | Rac prophage; integrase |
| RA | 1,413,031 | T→A | 6.9% | S69C (AGC→TGC) ‡ | intR ← | Rac prophage; integrase |
| RA | 1,413,033 | G→C | 7.1% | S68C (TCC→TGC) | intR ← | Rac prophage; integrase |
| RA | 1,449,050 | T→A | 11.6% | intergenic (+32/+26) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| RA | 1,456,819 | T→A | 8.1% | I130I (ATT→ATA) | paaE → | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
| RA | 1,498,892 | A→T | 11.8% | intergenic (+17/‑46) | ydcH → / → rimL | DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,498,894 | C→G | 11.8% | intergenic (+19/‑44) | ydcH → / → rimL | DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,498,896 | A→T | 11.8% | intergenic (+21/‑42) | ydcH → / → rimL | DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,361 | A→G | 5.3% | N142D (AAC→GAC) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,365 | A→T | 5.1% | Q143L (CAG→CTG) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,369 | C→T | 5.0% | V144V (GTC→GTT) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,511,139 | G→C | 7.3% | W379C (TGG→TGC) | ydcR → | putative DNA‑binding transcriptional regulator and putative aminotransferase |
| RA | 1,557,343 | C→T | 6.2% | T232T (ACG→ACA) ‡ | ddpF ← | D,D‑dipeptide ABC transporter ATPase |
| RA | 1,557,345 | T→A | 6.1% | T232S (ACG→TCG) ‡ | ddpF ← | D,D‑dipeptide ABC transporter ATPase |
| RA | 1,557,347 | A→G | 6.3% | L231P (CTG→CCG) | ddpF ← | D,D‑dipeptide ABC transporter ATPase |
| RA | 1,567,466 | G→C | 8.8% | intergenic (‑326/+38) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,567,467 | G→T | 8.8% | intergenic (‑327/+37) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,567,469 | A→T | 8.8% | intergenic (‑329/+35) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,567,471 | A→C | 7.9% | intergenic (‑331/+33) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,567,472 | G→C | 8.6% | intergenic (‑332/+32) | dosC ← / ← yddW | diguanylate cyclase, cold‑ and stationary phase‑induced oxygen‑dependent biofilm regulator/liprotein, glycosyl hydrolase homolog |
| RA | 1,579,563 | G→T | 8.1% | intergenic (‑221/+70) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,564 | G→A | 8.1% | intergenic (‑222/+69) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,569 | T→C | 8.1% | intergenic (‑227/+64) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,570 | A→C | 8.3% | intergenic (‑228/+63) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,642,370 | C→G | 8.5% | intergenic (+303/+119) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,642,373 | C→G | 8.3% | intergenic (+306/+116) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,660,198 | T→A | 5.0% | A710A (GCT→GCA) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,446 | C→T | 6.5% | A793V (GCG→GTG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,674,171 | Δ1 bp | 5.8% | coding (259/1035 nt) | tqsA → | pheromone AI‑2 transporter |
| RA | 1,674,177 | G→T | 5.2% | E89* (GAG→TAG) ‡ | tqsA → | pheromone AI‑2 transporter |
| RA | 1,674,178 | A→C | 5.3% | E89A (GAG→GCG) ‡ | tqsA → | pheromone AI‑2 transporter |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,703,251 | A→T | 8.8% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,703,252 | A→T | 8.6% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,712,337 | A→T | 7.9% | intergenic (+179/‑432) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,712,338 | A→T | 7.9% | intergenic (+180/‑431) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,736,097 | T→A | 7.9% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,736,100 | T→A | 7.7% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,764,687 | T→C | 11.4% | intergenic (‑301/+26) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,692:1 | +T | 6.5% | intergenic (‑306/+21) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,695 | Δ1 bp | 6.1% | intergenic (‑309/+18) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,701 | G→A | 10.6% | intergenic (‑315/+12) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,789,082 | G→T | 6.1% | Q216H (CAG→CAT) | aroH → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
| RA | 1,789,083 | A→C | 5.9% | M217L (ATG→CTG) | aroH → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
| RA | 1,792,240 | T→A | 7.2% | intergenic (‑220/+27) | ydiV ← / ← nlpC | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein |
| RA | 1,792,241 | A→T | 7.8% | intergenic (‑221/+26) | ydiV ← / ← nlpC | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein |
| RA | 1,792,242 | T→A | 7.8% | intergenic (‑222/+25) | ydiV ← / ← nlpC | anti‑FlhD4C2 factor, inactive EAL family phosphodiesterase/putative C40 clan peptidase lipoprotein |
| RA | 1,799,370 | Δ1 bp | 6.7% | intergenic (‑100/+23) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,799,374:1 | +T | 6.7% | intergenic (‑104/+19) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,801,371 | A→G | 7.1% | C400C (TGT→TGC) ‡ | thrS ← | threonyl‑tRNA synthetase |
| RA | 1,801,372 | C→T | 7.1% | C400Y (TGT→TAT) ‡ | thrS ← | threonyl‑tRNA synthetase |
| RA | 1,865,682 | G→C | 9.9% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,928,799 | A→C | 5.0% | L14R (CTT→CGT) | ptrB ← | protease II |
| RA | 1,928,802 | G→T | 5.4% | T13K (ACG→AAG) | ptrB ← | protease II |
| RA | 1,954,256 | T→A | 7.3% | I272N (ATT→AAT) | cmoB → | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,985,112 | C→G | 10.3% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 1,987,858 | G→C | 5.7% | intergenic (‑100/+15) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,992,083 | G→C | 8.4% | noncoding (35/76 nt) | glyW ← | tRNA‑Gly |
| RA | 1,999,231 | T→A | 7.6% | T84S (ACT→TCT) | dcyD ← | D‑cysteine desulfhydrase, PLP‑dependent |
| RA | 2,028,158 | G→C | 9.2% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 8.1% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 8.1% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,044,721 | G→A | 7.4% | intergenic (+97/‑217) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,074,691 | C→G | 6.0% | intergenic (+33/‑88) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| RA | 2,079,004 | G→C | 7.4% | intergenic (+73/+28) | yoeF → / ← yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| RA | 2,081,688 | A→T | 5.6% | I287N (ATT→AAT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b |
| RA | 2,089,196 | T→A | 6.1% | intergenic (‑68/+15) | yeeZ ← / ← yoeB | putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system |
| RA | 2,089,197 | A→T | 6.2% | intergenic (‑69/+14) | yeeZ ← / ← yoeB | putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system |
| RA | 2,089,198 | T→A | 5.3% | intergenic (‑70/+13) | yeeZ ← / ← yoeB | putative epimerase/toxin of the YoeB‑YefM toxin‑antitoxin system |
| RA | 2,090,122 | A→G | 11.5% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 11.2% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 11.2% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,115,847 | G→T | 9.0% | A17E (GCG→GAG) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,849 | C→G | 8.8% | S16S (TCG→TCC) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,851 | A→C | 8.8% | S16A (TCG→GCG) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,142,505 | G→C | 7.1% | R148R (CGC→CGG) | udk ← | uridine/cytidine kinase |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,153,792 | T→G | 5.9% | intergenic (+13/‑224) | sibB → / → mdtA | sRNA antisense regulator of toxic IbsB protein/multidrug efflux system, subunit A |
| RA | 2,153,793 | C→G | 5.8% | intergenic (+14/‑223) | sibB → / → mdtA | sRNA antisense regulator of toxic IbsB protein/multidrug efflux system, subunit A |
| RA | 2,153,794 | C→A | 5.7% | intergenic (+15/‑222) | sibB → / → mdtA | sRNA antisense regulator of toxic IbsB protein/multidrug efflux system, subunit A |
| RA | 2,169,671 | T→G | 5.5% | intergenic (+60/+22) | yegS → / ← gatR | phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
| RA | 2,169,672 | T→C | 5.5% | intergenic (+61/+21) | yegS → / ← gatR | phosphatidylglycerol kinase, metal‑dependent/pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,183,934 | C→T | 10.6% | E195K (GAA→AAA) | thiD ← | hydroxy‑methylpyrimidine kinase and hydroxy‑phosphomethylpyrimidine kinase |
| RA | 2,183,939 | T→G | 11.8% | E193A (GAG→GCG) | thiD ← | hydroxy‑methylpyrimidine kinase and hydroxy‑phosphomethylpyrimidine kinase |
| RA | 2,183,942 | C→A | 10.4% | R192L (CGC→CTC) | thiD ← | hydroxy‑methylpyrimidine kinase and hydroxy‑phosphomethylpyrimidine kinase |
| RA | 2,183,947 | A→G | 10.9% | F190F (TTT→TTC) | thiD ← | hydroxy‑methylpyrimidine kinase and hydroxy‑phosphomethylpyrimidine kinase |
| RA | 2,252,803 | G→A | 7.3% | intergenic (+15/+92) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,804 | C→A | 7.3% | intergenic (+16/+91) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,810 | T→G | 6.9% | intergenic (+22/+85) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,812 | A→T | 6.9% | intergenic (+24/+83) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,252,814 | C→A | 7.4% | intergenic (+26/+81) | yeiI → / ← nupX | putative kinase/nucleoside permease |
| RA | 2,270,602 | T→C | 6.1% | intergenic (+57/‑124) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,273,242 | C→T | 5.5% | Y293Y (TAC→TAT) | yejA → | microcin C ABC transporter periplasmic binding protein |
| RA | 2,282,830 | T→C | 6.2% | intergenic (+29/+110) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,831 | C→G | 6.3% | intergenic (+30/+109) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,832 | C→G | 6.6% | intergenic (+31/+108) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,282,833 | G→A | 6.8% | intergenic (+32/+107) | rplY → / ← yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| RA | 2,286,311 | C→G | 14.3% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 14.3% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 14.5% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,302,452 | A→C | 6.3% | L101R (CTG→CGG) | napA ← | nitrate reductase, periplasmic, large subunit |
| RA | 2,302,455 | G→T | 7.5% | P100Q (CCG→CAG) | napA ← | nitrate reductase, periplasmic, large subunit |
| RA | 2,311,616 | C→T | 8.0% | intergenic (‑82/+30) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,311,619 | A→G | 8.9% | intergenic (‑85/+27) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,367,637 | T→G | 5.5% | N189K (AAT→AAG) | arnC → | undecaprenyl phosphate‑L‑Ara4FN transferase |
| RA | 2,367,640 | C→A | 5.3% | I190I (ATC→ATA) | arnC → | undecaprenyl phosphate‑L‑Ara4FN transferase |
| RA | 2,383,956 | A→T | 12.2% | intergenic (+32/+39) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,383,959 | A→T | 11.8% | intergenic (+35/+36) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,390,012 | Δ1 bp | 8.9% | intergenic (+48/+36) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,390,016:1 | +C | 9.0% | intergenic (+52/+32) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,414,689 | C→G | 5.7% | intergenic (+17/‑58) | ackA → / → pta | acetate kinase A and propionate kinase 2/phosphate acetyltransferase |
| RA | 2,430,144 | G→C | 8.5% | A32G (GCC→GGC) | purF ← | amidophosphoribosyltransferase |
| RA | 2,432,985 | A→G | 9.3% | intergenic (‑43/+27) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,434,094 | G→A | 5.6% | R216R (CGC→CGT) | dedA ← | DedA family inner membrane protein |
| RA | 2,434,097 | T→C | 5.7% | A215A (GCA→GCG) | dedA ← | DedA family inner membrane protein |
| RA | 2,439,388 | T→C | 7.7% | S245G (AGC→GGC) | yfcJ ← | putative arabinose efflux transporter |
| RA | 2,439,389 | G→A | 6.3% | A244A (GCC→GCT) | yfcJ ← | putative arabinose efflux transporter |
| RA | 2,474,878 | T→C | 11.2% | intergenic (+22/‑106) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,474,881 | G→A | 11.9% | intergenic (+25/‑103) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,511,417 | A→G | 8.4% | intergenic (+90/+51) | ypeC → / ← mntH | DUF2502 family putative periplasmic protein/manganese/divalent cation transporter |
| RA | 2,511,418 | A→C | 8.4% | intergenic (+91/+50) | ypeC → / ← mntH | DUF2502 family putative periplasmic protein/manganese/divalent cation transporter |
| RA | 2,511,424 | T→A | 7.5% | intergenic (+97/+44) | ypeC → / ← mntH | DUF2502 family putative periplasmic protein/manganese/divalent cation transporter |
| RA | 2,511,425 | T→A | 7.8% | intergenic (+98/+43) | ypeC → / ← mntH | DUF2502 family putative periplasmic protein/manganese/divalent cation transporter |
| RA | 2,521,344 | C→T | 8.8% | intergenic (+16/+249) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,346 | A→T | 9.3% | intergenic (+18/+247) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,348 | A→G | 9.3% | intergenic (+20/+245) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,525,907 | G→A | 7.4% | intergenic (+16/+23) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,525,908 | C→G | 7.0% | intergenic (+17/+22) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,536,370 | C→G | 9.7% | intergenic (+27/+16) | crr → / ← pdxK | glucose‑specific enzyme IIA component of PTS/pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase |
| RA | 2,536,373 | C→G | 8.0% | intergenic (+30/+13) | crr → / ← pdxK | glucose‑specific enzyme IIA component of PTS/pyridoxal‑pyridoxamine kinase/hydroxymethylpyrimidine kinase |
| RA | 2,549,556 | C→G | 5.2% | intergenic (+150/+90) | yfeW → / ← yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| RA | 2,564,635 | G→C | 5.0% | R38P (CGC→CCC) | yffS → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,564,640 | G→C | 5.3% | G40R (GGA→CGA) | yffS → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,566,266 | C→A | 7.8% | G207C (GGC→TGC) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,566,267 | T→G | 8.1% | A206A (GCA→GCC) | eutA ← | reactivating factor for ethanolamine ammonia lyase |
| RA | 2,590,767 | T→C | 5.1% | intergenic (+59/+40) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,590,771 | C→G | 5.1% | intergenic (+63/+36) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,590,775 | G→A | 6.5% | intergenic (+67/+32) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,638,584 | A→T | 8.3% | F23L (TTT→TTA) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,653,367 | G→A | 13.0% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 12.1% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,691,169 | A→T | 5.7% | noncoding (172/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,171 | T→A | 5.3% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,173 | A→T | 5.4% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,704,304 | A→G | 14.9% | intergenic (‑241/+31) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,306 | A→T | 15.0% | intergenic (‑243/+29) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,308 | C→T | 15.0% | intergenic (‑245/+27) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,707,320 | A→T | 8.1% | intergenic (‑196/+2) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,707,321 | A→T | 8.1% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,716,030 | T→G | 9.1% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 8.9% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,724,095 | C→A | 6.2% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,097 | T→A | 6.2% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 6.2% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,731,073 | A→T | 7.2% | noncoding (85/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,731,074 | A→T | 7.0% | noncoding (84/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,737,703 | A→G | 7.3% | intergenic (+57/‑42) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,737,705 | A→T | 6.5% | intergenic (+59/‑40) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,737,707 | C→T | 6.4% | intergenic (+61/‑38) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,737,711 | G→A | 7.6% | intergenic (+65/‑34) | pheL → / → pheA | pheA gene leader peptide/chorismate mutase and prephenate dehydratase, P‑protein |
| RA | 2,761,623 | C→A | 5.5% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,801,056 | A→T | 10.7% | N31I (AAT→ATT) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,807,091 | T→C | 7.1% | intergenic (+17/‑41) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,093 | A→T | 7.2% | intergenic (+19/‑39) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,095 | G→A | 7.3% | intergenic (+21/‑37) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,810,872 | C→T | 8.6% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 8.6% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,811,101 | G→A | 5.2% | R111H (CGC→CAC) | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,817,977 | A→T | 7.2% | intergenic (‑117/+82) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,817,978 | A→T | 5.7% | intergenic (‑118/+81) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,838,231 | A→T | 8.3% | intergenic (‑126/+23) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,849,945 | A→T | 6.3% | intergenic (‑96/+29) | hycB ← / ← hycA | hydrogenase 3, Fe‑S subunit/regulator of the transcriptional regulator FhlA |
| RA | 2,860,738 | A→T | 5.1% | I166N (ATT→AAT) | ygbI ← | DeoR family putative transcriptional regulator |
| RA | 2,860,740 | C→G | 5.3% | M165I (ATG→ATC) | ygbI ← | DeoR family putative transcriptional regulator |
| RA | 2,866,487 | G→C | 10.9% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 10.9% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,873,915 | A→G | 7.1% | H26H (CAT→CAC) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,917 | G→C | 7.2% | H26D (CAT→GAT) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,919 | C→T | 5.8% | G25D (GGT→GAT) | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,902,494 | G→T | 5.1% | G200V (GGA→GTA) | ygcE → | putative kinase |
| RA | 2,906,607 | C→T | 12.9% | intergenic (+24/+36) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,906,608 | G→C | 20.2% | intergenic (+25/+35) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,906,609 | G→C | 13.0% | intergenic (+26/+34) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,907,998 | A→T | 6.2% | intergenic (‑57/+31) | eno ← / ← pyrG | enolase/CTP synthetase |
| RA | 2,961,248 | A→T | 5.3% | L394Q (CTG→CAG) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,961,251 | A→T | 5.3% | L393Q (CTG→CAG) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,972,652 | A→T | 6.1% | intergenic (+15/+17) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 2,972,653 | A→T | 6.1% | intergenic (+16/+16) | tas → / ← lplT | putative NADP(H)‑dependent aldo‑keto reductase/lysophospholipid transporter |
| RA | 2,976,320 | T→G | 5.4% | noncoding (66/82 nt) | omrB ← | sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent |
| RA | 2,976,321 | C→A | 7.6% | noncoding (65/82 nt) | omrB ← | sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent |
| RA | 2,983,573 | C→T | 6.2% | L184L (CTG→CTA) ‡ | kduI ← | hexuronate isomerase |
| RA | 2,983,574 | A→G | 5.9% | L184P (CTG→CCG) ‡ | kduI ← | hexuronate isomerase |
| RA | 3,007,466 | T→C | 7.7% | intergenic (+14/‑44) | ygeW → / → ygeX | putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
| RA | 3,007,473 | G→A | 7.4% | intergenic (+21/‑37) | ygeW → / → ygeX | putative carbamoyltransferase/2,3‑diaminopropionate ammonia lyase, PLP‑dependent |
| RA | 3,020,510 | G→T | 12.5% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 12.5% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 13.7% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,033,624 | A→G | 6.2% | intergenic (+11/+33) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,033,627 | T→A | 6.4% | intergenic (+14/+30) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,033,628 | T→A | 6.4% | intergenic (+15/+29) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,033,631 | C→T | 6.3% | intergenic (+18/+26) | idi → / ← lysS | isopentenyl diphosphate isomerase/lysine tRNA synthetase, constitutive |
| RA | 3,035,479 | G→A | 5.7% | T268I (ACC→ATC) ‡ | prfB ← | peptide chain release factor RF‑2 |
| RA | 3,035,480 | T→C | 5.5% | T268A (ACC→GCC) ‡ | prfB ← | peptide chain release factor RF‑2 |
| RA | 3,046,070 | T→G | 6.0% | intergenic (‑169/+98) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,046,075 | A→T | 5.7% | intergenic (‑174/+93) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,046,076 | A→T | 5.7% | intergenic (‑175/+92) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,046,077 | A→T | 5.7% | intergenic (‑176/+91) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,046,082 | C→A | 5.7% | intergenic (‑181/+86) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,059,703 | A→T | 6.1% | intergenic (‑2/‑50) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,059,704 | A→T | 6.2% | intergenic (‑3/‑49) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,061,817 | G→C | 10.4% | W323S (TGG→TCG) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,061,818 | G→C | 10.4% | W323C (TGG→TGC) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,067,320 | A→T | 7.3% | intergenic (‑147/+20) | ygfI ← / ← yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| RA | 3,101,655 | T→A | 9.4% | intergenic (‑32/+152) | yggN ← / ← yggL | DUF2884 family putative periplasmic protein/DUF469 family protein |
| RA | 3,101,656 | T→A | 9.2% | intergenic (‑33/+151) | yggN ← / ← yggL | DUF2884 family putative periplasmic protein/DUF469 family protein |
| RA | 3,114,881 | A→C | 6.0% | L1411R (CTG→CGG) ‡ | sslE ← | putative secreted and surface‑associated lipoprotein mucinase |
| RA | 3,114,882 | G→T | 6.2% | L1411M (CTG→ATG) ‡ | sslE ← | putative secreted and surface‑associated lipoprotein mucinase |
| RA | 3,135,356 | T→C | 5.2% | Q339R (CAG→CGG) ‡ | pitB ← | phosphate transporter |
| RA | 3,135,357 | G→A | 5.2% | Q339* (CAG→TAG) ‡ | pitB ← | phosphate transporter |
| RA | 3,139,691 | T→G | 5.5% | intergenic (+98/+25) | yghU → / ← hybG | putative S‑transferase/hydrogenase 2 accessory protein |
| RA | 3,139,692 | T→C | 5.5% | intergenic (+99/+24) | yghU → / ← hybG | putative S‑transferase/hydrogenase 2 accessory protein |
| RA | 3,140,351 | C→T | 5.1% | R150H (CGC→CAC) ‡ | hybE ← | hydrogenase 2‑specific chaperone |
| RA | 3,140,352 | G→C | 5.1% | R150G (CGC→GGC) ‡ | hybE ← | hydrogenase 2‑specific chaperone |
| RA | 3,140,353 | A→G | 6.2% | R149R (CGT→CGC) | hybE ← | hydrogenase 2‑specific chaperone |
| RA | 3,156,590 | C→A | 10.5% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 10.4% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,171,852 | C→T | 9.7% | intergenic (+19/+27) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,857 | A→T | 10.3% | intergenic (+24/+22) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,858 | A→T | 10.3% | intergenic (+25/+21) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,863 | A→G | 12.3% | intergenic (+30/+16) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,180,505 | G→T | 11.0% | E29* (GAG→TAG) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,227,836 | T→C | 5.1% | L12L (CTT→CTC) | ygjJ → | putative periplasmic protein |
| RA | 3,239,609 | T→G | 11.9% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,610 | C→G | 11.5% | intergenic (+65/‑334) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,611 | C→A | 11.5% | intergenic (+66/‑333) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,271,825 | T→A | 8.1% | intergenic (‑55/+42) | garK ← / ← garR | glycerate kinase I/tartronate semialdehyde reductase |
| RA | 3,288,032 | C→A | 9.6% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,288,033 | T→G | 10.4% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,291,109 | A→T | 10.8% | K766* (AAA→TAA) ‡ | yraJ → | putative outer membrane protein |
| RA | 3,291,110 | A→T | 10.8% | K766I (AAA→ATA) ‡ | yraJ → | putative outer membrane protein |
| RA | 3,309,012 | A→G | 6.1% | intergenic (‑88/+21) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,324,952 | A→G | 7.4% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 7.4% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 7.4% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,959 | C→T | 6.4% | intergenic (‑48/+42) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,334,703 | A→G | 10.3% | intergenic (+22/‑206) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,704 | G→C | 10.5% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,705 | C→T | 10.4% | intergenic (+24/‑204) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,346,792 | C→G | 5.6% | P72R (CCG→CGG) | ptsN → | sugar‑specific enzyme IIA component of PTS |
| RA | 3,388,284 | A→T | 5.0% | A281A (GCT→GCA) ‡ | aaeA ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,388,285 | G→A | 5.1% | A281V (GCT→GTT) ‡ | aaeA ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,400,846 | A→T | 9.9% | I81N (ATC→AAC) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,400,849 | A→T | 9.8% | V80D (GTT→GAT) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,400,855 | T→A | 8.4% | D78V (GAC→GTC) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,407,293 | T→A | 8.9% | intergenic (+27/‑82) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,407,294 | T→A | 8.8% | intergenic (+28/‑81) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,407,295 | T→A | 8.8% | intergenic (+29/‑80) | accC → / → yhdT | acetyl‑CoA carboxylase, biotin carboxylase subunit/DUF997 family putative inner membrane protein |
| RA | 3,423,620 | A→G | 5.5% | noncoding (36/76 nt) | thrV ← | tRNA‑Thr |
| RA | 3,423,621 | C→G | 5.4% | noncoding (35/76 nt) | thrV ← | tRNA‑Thr |
| RA | 3,423,622 | C→T | 5.3% | noncoding (34/76 nt) | thrV ← | tRNA‑Thr |
| RA | 3,439,588 | G→C | 9.2% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 9.2% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,449,020 | A→T | 7.9% | R50R (CGT→CGA) | rplP ← | 50S ribosomal subunit protein L16 |
| RA | 3,477,878 | T→A | 8.3% | intergenic (+20/+29) | slyX → / ← slyD | phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) |
| RA | 3,486,217 | A→C | 5.9% | Q33P (CAG→CCG) ‡ | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,486,218 | G→T | 6.8% | Q33H (CAG→CAT) ‡ | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,503,970 | G→A | 5.2% | intergenic (+18/‑82) | frlD → / → frlR | fructoselysine 6‑kinase/putative DNA‑binding transcriptional regulator |
| RA | 3,503,971 | C→G | 5.2% | intergenic (+19/‑81) | frlD → / → frlR | fructoselysine 6‑kinase/putative DNA‑binding transcriptional regulator |
| RA | 3,505,785 | A→T | 7.5% | I79N (ATT→AAT) | yhfS ← | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,522,779 | T→A | 5.2% | intergenic (‑28/‑92) | hofM ← / → mrcA | DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| RA | 3,522,780 | C→G | 5.2% | intergenic (‑29/‑91) | hofM ← / → mrcA | DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| RA | 3,544,689 | A→T | 7.0% | R52R (CGT→CGA) | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,544,692 | C→G | 7.0% | G51G (GGG→GGC) ‡ | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,544,693 | C→G | 7.0% | G51A (GGG→GCG) ‡ | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,544,696 | A→T | 6.9% | F50Y (TTC→TAC) | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,566,210 | A→T | 6.4% | G124G (GGT→GGA) ‡ | glgP ← | glycogen phosphorylase |
| RA | 3,566,212 | C→G | 6.7% | G124R (GGT→CGT) ‡ | glgP ← | glycogen phosphorylase |
| RA | 3,566,215 | T→A | 6.7% | N123Y (AAC→TAC) | glgP ← | glycogen phosphorylase |
| RA | 3,566,218 | C→G | 6.6% | G122R (GGT→CGT) | glgP ← | glycogen phosphorylase |
| RA | 3,566,220 | A→T | 6.5% | L121H (CTC→CAC) | glgP ← | glycogen phosphorylase |
| RA | 3,569,431 | A→G | 8.2% | I630T (ATT→ACT) | glgX ← | glycogen debranching enzyme |
| RA | 3,569,436 | G→A | 7.5% | H628H (CAC→CAT) ‡ | glgX ← | glycogen debranching enzyme |
| RA | 3,569,437 | T→C | 7.5% | H628R (CAC→CGC) ‡ | glgX ← | glycogen debranching enzyme |
| RA | 3,569,442 | C→T | 7.2% | E626E (GAG→GAA) | glgX ← | glycogen debranching enzyme |
| RA | 3,601,824 | G→C | 8.1% | P88R (CCC→CGC) ‡ | ftsX ← | putative ABC transporter permease |
| RA | 3,601,825 | G→C | 8.0% | P88A (CCC→GCC) ‡ | ftsX ← | putative ABC transporter permease |
| RA | 3,648,273 | C→G | 5.5% | intergenic (+127/‑21) | agrA → / → agrB | inactive antisense sRNA/antisense sRNA antitoxin for the DinQ toxin |
| RA | 3,657,599 | T→A | 16.8% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 16.8% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 16.9% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,674,388 | G→A | 10.4% | intergenic (+13/‑398) | yhjD → / → yhjE | inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter; membrane protein |
| RA | 3,674,389 | C→A | 10.4% | intergenic (+14/‑397) | yhjD → / → yhjE | inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter; membrane protein |
| RA | 3,674,395 | A→T | 10.0% | intergenic (+20/‑391) | yhjD → / → yhjE | inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter; membrane protein |
| RA | 3,674,396 | A→T | 10.0% | intergenic (+21/‑390) | yhjD → / → yhjE | inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter; membrane protein |
| RA | 3,674,403 | T→C | 9.5% | intergenic (+28/‑383) | yhjD → / → yhjE | inner membrane putative BrbK family alternate lipid exporter/putative MFS transporter; membrane protein |
| RA | 3,714,163:1 | +T | 7.3% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 7.3% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,720,294 | T→C | 6.5% | intergenic (+33/+154) | cspA → / ← hokA | RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small |
| RA | 3,774,207 | C→T | 7.7% | intergenic (+13/‑217) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,214 | C→T | 7.7% | intergenic (+20/‑210) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,215 | A→G | 7.7% | intergenic (+21/‑209) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,222 | A→G | 7.3% | intergenic (+28/‑202) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,781,051 | C→G | 6.2% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,790,300 | A→T | 8.3% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 8.3% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,794,970 | G→C | 5.6% | M14I (ATG→ATC) | waaF → | ADP‑heptose:LPS heptosyltransferase II |
| RA | 3,794,973 | G→C | 5.7% | M15I (ATG→ATC) | waaF → | ADP‑heptose:LPS heptosyltransferase II |
| RA | 3,798,234 | A→T | 5.3% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,798,235 | A→T | 5.3% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,815,816 | C→G | 5.1% | intergenic (‑48/+18) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,815,819 | C→G | 5.3% | intergenic (‑51/+15) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,817,948 | G→T | 5.2% | E63D (GAG→GAT) | dinD → | DNA damage‑inducible protein |
| RA | 3,832,800 | C→A | 5.1% | A580S (GCG→TCG) | yicI ← | putative alpha‑glucosidase |
| RA | 3,844,985 | C→A | 7.0% | A341D (GCC→GAC) | adeD → | cryptic adenine deaminase |
| RA | 3,844,994 | T→G | 8.2% | V344G (GTC→GGC) | adeD → | cryptic adenine deaminase |
| RA | 3,857,696 | G→C | 7.7% | P237A (CCA→GCA) | yidJ ← | sulfatase/phosphatase superfamily protein |
| RA | 3,869,523 | G→A | 6.3% | L49L (CTG→CTA) | cbrA → | colicin M resistance protein; FAD‑binding protein, putative oxidoreductase |
| RA | 3,877,558 | G→C | 10.6% | intergenic (‑93/+147) | yidB ← / ← gyrB | DUF937 family protein/DNA gyrase, subunit B |
| RA | 3,900,542 | A→T | 8.3% | I12I (ATT→ATA) | yieL ← | putative xylanase |
| RA | 3,900,545 | A→T | 8.5% | A11A (GCT→GCA) | yieL ← | putative xylanase |
| RA | 3,906,826 | T→C | 9.8% | intergenic (‑259/+27) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,906,828 | A→T | 9.6% | intergenic (‑261/+25) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,906,830 | G→A | 9.6% | intergenic (‑263/+23) | bglG ← / ← phoU | transcriptional antiterminator of the bgl operon/negative regulator of PhoR/PhoB two‑component regulator |
| RA | 3,915,375 | G→C | 5.0% | intergenic (‑175/+178) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,920,796 | T→C | 6.7% | A31A (GCA→GCG) | atpF ← | F0 sector of membrane‑bound ATP synthase, subunit b |
| RA | 3,920,809 | G→A | 6.7% | P27L (CCG→CTG) | atpF ← | F0 sector of membrane‑bound ATP synthase, subunit b |
| RA | 3,923,717 | G→A | 6.4% | intergenic (‑37/+27) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,923,718 | G→C | 6.5% | intergenic (‑38/+26) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,923,719 | G→C | 6.4% | intergenic (‑39/+25) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,923,720 | T→C | 6.2% | intergenic (‑40/+24) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,954,273 | G→T | 6.4% | E266* (GAA→TAA) ‡ | ilvD → | dihydroxyacid dehydratase |
| RA | 3,954,274 | A→C | 7.3% | E266A (GAA→GCA) ‡ | ilvD → | dihydroxyacid dehydratase |
| RA | 3,959,515 | T→A | 11.3% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,972,673 | A→C | 6.6% | E51A (GAG→GCG) ‡ | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 3,972,674 | G→T | 6.6% | E51D (GAG→GAT) ‡ | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 3,980,726 | G→A | 6.6% | intergenic (+30/‑161) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| RA | 3,980,727 | T→C | 6.4% | intergenic (+31/‑160) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| RA | 3,982,373 | A→T | 5.2% | intergenic (+101/‑2) | yifK → / → argX | putative APC family amino acid transporter/tRNA‑Arg |
| RA | 3,990,679 | T→G | 6.8% | S30R (AGC→CGC) | hemC ← | hydroxymethylbilane synthase |
| RA | 3,990,680 | C→A | 6.4% | A29A (GCG→GCT) | hemC ← | hydroxymethylbilane synthase |
| RA | 3,991,334 | T→A | 8.7% | I61N (ATT→AAT) ‡ | cyaA → | adenylate cyclase |
| RA | 3,991,335 | T→A | 8.7% | I61I (ATT→ATA) ‡ | cyaA → | adenylate cyclase |
| MC JC | 3,993,337 | Δ11 bp | 100% | coding (2185‑2195/2547 nt) | cyaA → | adenylate cyclase |
| RA | 4,007,324 | C→T | 5.7% | A487A (GCC→GCT) | recQ → | ATP‑dependent DNA helicase |
| RA | 4,015,333 | A→T | 7.3% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,017,216:1 | +A | 8.0% | intergenic (+24/‑117) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,017,222 | Δ1 bp | 9.6% | intergenic (+30/‑111) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,049,986 | G→T | 15.5% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,049,989 | A→C | 12.2% | noncoding (91/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,051,259 | G→T | 7.6% | noncoding (224/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,051,262 | A→C | 7.4% | noncoding (227/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,060,261 | G→T | 11.4% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 11.3% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,062,371 | A→T | 7.3% | N42I (AAT→ATT) | yihN → | MFS transporter family protein |
| RA | 4,088,209 | T→A | 8.3% | K549N (AAA→AAT) | frvR ← | putative frv operon regulator; contains a PTS EIIA domain |
| RA | 4,093,463 | A→G | 7.1% | S270S (AGT→AGC) | rhaD ← | rhamnulose‑1‑phosphate aldolase |
| RA | 4,116,937 | T→G | 100% | K96Q (AAG→CAG) | glpK ← | glycerol kinase |
| RA | 4,142,509 | T→G | 5.3% | intergenic (‑288/‑21) | frwA ← / → frwC | putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS |
| RA | 4,142,512 | C→A | 5.9% | intergenic (‑291/‑18) | frwA ← / → frwC | putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS |
| RA | 4,182,879 | C→A | 6.8% | F545L (TTC→TTA) | rpoB → | RNA polymerase, beta subunit |
| JC | 4,186,107 | (TCCGCTGGT)1→2 | 63.0% | coding (758/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,196,164 | G→C | 5.7% | intergenic (‑65/+168) | thiC ← / ← rsd | phosphomethylpyrimidine synthase/stationary phase protein, binds sigma 70 RNA polymerase subunit |
| RA | 4,196,168 | G→C | 6.0% | intergenic (‑69/+164) | thiC ← / ← rsd | phosphomethylpyrimidine synthase/stationary phase protein, binds sigma 70 RNA polymerase subunit |
| RA | 4,245,111 | C→A | 6.1% | intergenic (‑36/+118) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,261,358 | T→A | 8.2% | intergenic (+52/‑311) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,359 | T→A | 8.2% | intergenic (+53/‑310) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,277,223 | A→T | 7.2% | I54N (ATT→AAT) | soxS ← | superoxide response regulon transcriptional activator; autoregulator |
| RA | 4,296,060 | C→T | 20.0% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,297,196 | A→C | 5.5% | intergenic (‑71/+23) | yjcO ← / ← fdhF | Sel1 family TPR‑like repeat protein/formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,307,294 | A→T | 5.1% | L169Q (CTG→CAG) | alsK ← | D‑allose kinase |
| RA | 4,307,298 | G→A | 5.1% | P168S (CCC→TCC) | alsK ← | D‑allose kinase |
| RA | 4,314,233 | A→T | 8.9% | intergenic (+36/+111) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,317,977 | A→G | 5.4% | intergenic (‑82/+29) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,317,978 | A→C | 5.4% | intergenic (‑83/+28) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,317,984 | T→A | 5.5% | intergenic (‑89/+22) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,317,985 | T→A | 5.4% | intergenic (‑90/+21) | phnL ← / ← phnK | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase/carbon‑phosphorus lyase complex subunit, putative ATP transporter ATP‑binding protein |
| RA | 4,326,341 | T→C | 6.4% | intergenic (‑600/+58) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,332,868 | G→T | 7.1% | R135R (CGC→CGA) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,332,871 | A→C | 7.2% | S134R (AGT→AGG) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,335,654 | T→A | 7.8% | intergenic (‑64/+40) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 7.8% | intergenic (‑65/+39) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,353,171 | C→G | 5.4% | intergenic (+90/+29) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,356,445 | A→T | 7.1% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 7.1% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,362,528 | G→A | 12.3% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 12.4% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,365,452 | G→T | 5.5% | intergenic (‑96/+20) | cutA ← / ← dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| RA | 4,365,453 | A→C | 5.6% | intergenic (‑97/+19) | cutA ← / ← dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| RA | 4,366,854 | T→G | 11.1% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 11.3% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,373,273 | A→G | 5.1% | intergenic (+111/+92) | yjeI → / ← yjeJ | DUF4156 family lipoprotein/uncharacterized protein |
| RA | 4,373,274 | A→C | 5.1% | intergenic (+112/+91) | yjeI → / ← yjeJ | DUF4156 family lipoprotein/uncharacterized protein |
| RA | 4,373,280 | T→A | 5.1% | intergenic (+118/+85) | yjeI → / ← yjeJ | DUF4156 family lipoprotein/uncharacterized protein |
| RA | 4,373,281 | T→A | 5.2% | intergenic (+119/+84) | yjeI → / ← yjeJ | DUF4156 family lipoprotein/uncharacterized protein |
| RA | 4,373,287 | G→T | 5.3% | intergenic (+125/+78) | yjeI → / ← yjeJ | DUF4156 family lipoprotein/uncharacterized protein |
| RA | 4,373,288 | C→T | 5.3% | intergenic (+126/+77) | yjeI → / ← yjeJ | DUF4156 family lipoprotein/uncharacterized protein |
| RA | 4,392,506 | C→G | 7.2% | noncoding (35/76 nt) | glyX → | tRNA‑Gly |
| RA | 4,424,465 | G→T | 7.2% | intergenic (+79/+51) | ulaF → / ← yjfY | L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic |
| RA | 4,424,468 | A→C | 6.2% | intergenic (+82/+48) | ulaF → / ← yjfY | L‑ribulose 5‑phosphate 4‑epimerase/YhcN family protein, periplasmic |
| RA | 4,439,845 | T→A | 5.5% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 family protein/UPF0053 family inner membrane protein |
| RA | 4,472,434 | G→A | 12.2% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,472,437 | T→C | 12.4% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,479,012 | A→T | 7.6% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 7.8% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 8.1% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,489,858 | G→A | 5.9% | A69V (GCA→GTA) | yjgR ← | DUF853 family protein with NTPase fold |
| RA | 4,496,511 | A→G | 5.1% | intergenic (+22/‑164) | leuX → / → intB | tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| RA | 4,496,512 | C→T | 5.1% | intergenic (+23/‑163) | leuX → / → intB | tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| RA | 4,498,222 | A→T | 12.5% | intergenic (+282/‑50) | intB → / → insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| RA | 4,498,223 | A→T | 12.5% | intergenic (+283/‑49) | intB → / → insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| RA | 4,520,500 | Δ1 bp | 9.2% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 9.2% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,541,545 | C→G | 7.1% | H197D (CAC→GAC) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,549,932 | T→A | 6.5% | intergenic (+222/+21) | fimH → / ← gntP | minor component of type 1 fimbriae/fructuronate transporter |
| RA | 4,566,645 | T→A | 5.5% | K201I (AAA→ATA) ‡ | yjiN ← | zinc‑type alcohol dehydrogenase‑like protein |
| RA | 4,566,646 | T→A | 5.6% | K201* (AAA→TAA) ‡ | yjiN ← | zinc‑type alcohol dehydrogenase‑like protein |
| RA | 4,573,188 | G→A | 5.1% | pseudogene (775/1503 nt) | yjiT → | pseudogene |
| RA | 4,573,189 | T→C | 5.0% | pseudogene (776/1503 nt) | yjiT → | pseudogene |
| RA | 4,604,753 | T→A | 7.8% | S198R (AGT→AGA) | bglJ → | bgl operon transcriptional activator |
| RA | 4,604,754 | T→A | 7.8% | S199T (TCT→ACT) | bglJ → | bgl operon transcriptional activator |
| RA | 4,610,720 | T→A | 6.1% | L436Q (CTG→CAG) | prfC → | peptide chain release factor RF‑3 |
| RA | 4,638,690 | C→T | 12.5% | G171G (GGC→GGT) | creD → | inner membrane protein |
| RA | 4,638,691 | A→G | 12.3% | T172A (ACC→GCC) | creD → | inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423761–3424234 | 3424546–3424238 | 5–786 | 37 [32] | [35] 37 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 73856 | 59 (0.690) | 6 (0.070) | 4/254 | NT | 9.7% | coding (666/1611 nt) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease |
| ? | NC_000913 | = 73894 | 55 (0.670) | coding (628/1611 nt) | thiP | thiamine/thiamine pyrophosphate ABC transporter permease | |||||
| * | ? | NC_000913 | 274692 = | NA (NA) | 3 (0.040) | 3/256 | NT | NA | noncoding (458/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274732 = | NA (NA) | noncoding (418/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 601044 | 49 (0.580) | 3 (0.040) | 3/246 | NT | 6.1% | coding (2331/3144 nt) | cusA | copper/silver efflux system, membrane component |
| ? | NC_000913 | = 601061 | 47 (0.590) | coding (2348/3144 nt) | cusA | copper/silver efflux system, membrane component | |||||
| * | ? | NC_000913 | 1022126 = | 73 (0.860) | 4 (0.050) | 4/256 | NT | 5.4% | coding (1758/2154 nt) | yccS | putative transporter, FUSC superfamily inner membrane protein |
| ? | NC_000913 | 1022162 = | 69 (0.840) | coding (1722/2154 nt) | yccS | putative transporter, FUSC superfamily inner membrane protein | |||||
| * | ? | NC_000913 | = 1062416 | 67 (0.790) | 5 (0.060) | 5/252 | NT | 6.8% | noncoding (10/134 nt) | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 1062437 | 73 (0.900) | noncoding (31/134 nt) | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 1207790 = | 29 (0.340) | 43 (0.580) | 38/232 | NT | 53.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 49 (0.660) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 32 (0.380) | 35 (0.470) | 33/232 | NT | 47.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 49 (0.660) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1486996 | 65 (0.760) | 5 (0.060) | 5/242 | NT | 7.3% | intergenic (+33/‑239) | hrpA/ydcF | putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding |
| ? | NC_000913 | = 1487009 | 68 (0.870) | intergenic (+46/‑226) | hrpA/ydcF | putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding | |||||
| * | ? | NC_000913 | 1787626 = | 53 (0.620) | 4 (0.050) | 4/254 | NT | 7.7% | coding (182/834 nt) | ppsR | PEP synthase kinase and PEP synthase pyrophosphorylase |
| ? | NC_000913 | 1787651 = | 45 (0.550) | coding (207/834 nt) | ppsR | PEP synthase kinase and PEP synthase pyrophosphorylase | |||||
| * | ? | NC_000913 | 2077179 = | 70 (0.820) | 5 (0.060) | 4/248 | NT | 7.2% | coding (68/369 nt) | cbeA | CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin |
| ? | NC_000913 | 2077221 = | 64 (0.800) | coding (110/369 nt) | cbeA | CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin | |||||
| * | ? | NC_000913 | = 3307484 | 75 (0.880) | 4 (0.050) | 4/254 | NT | 5.3% | coding (377/1890 nt) | deaD | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 3307492 | 72 (0.880) | coding (369/1890 nt) | deaD | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | 3721045 = | 126 (1.480) | 234 (2.770) | 130/262 | NT | 68.0% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 95 (1.120) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | 3765547 = | 96 (1.130) | 11 (0.130) | 5/254 | NT | 6.0% | coding (3365/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3767284 = | 252 (3.080) | pseudogene (64/945 nt) | rhsJ | Rhs‑family protein | |||||
| * | ? | NC_000913 | = 3943554 | 15 (0.180) | 6 (0.080) | 4/242 | NT | 30.4% | intergenic (+44/‑150) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943572 | NA (NA) | intergenic (+62/‑132) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | 3998038 = | 79 (0.930) | 5 (0.060) | 5/250 | NT | 6.6% | coding (56/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II |
| ? | NC_000913 | 3998077 = | 66 (0.820) | coding (95/2163 nt) | uvrD | DNA‑dependent ATPase I and helicase II | |||||
| * | ? | NC_000913 | = 4058302 | 84 (0.990) | 6 (0.080) | 6/246 | NT | 6.4% | intergenic (‑268/‑105) | glnA/typA | glutamine synthetase/GTP‑binding protein |
| ? | NC_000913 | = 4058333 | 96 (1.210) | intergenic (‑299/‑74) | glnA/typA | glutamine synthetase/GTP‑binding protein | |||||
| * | ? | NC_000913 | = 4168330 | 48 (0.560) | 3 (0.040) | 3/264 | NT | 5.5% | intergenic (+130/‑42) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | = 4168374 | 55 (0.650) | noncoding (3/76 nt) | gltT | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4398582 | 52 (0.610) | 5 (0.060) | 4/252 | NT | 9.0% | coding (1171/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | NC_000913 | = 4398592 | 51 (0.630) | coding (1181/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
| * | ? | NC_000913 | = 4542690 | 50 (0.590) | 5 (0.060) | 5/246 | NT | 7.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 83 (1.050) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||