Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F176 I0 R1
|
792 |
112.0 |
3729108 |
98.1% |
3658254 |
142.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,200,197 |
C→A |
100% |
D204Y (GAT→TAT) |
intE ← |
e14 prophage; putative integrase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,200,197 | 0 | C | A | 100.0%
| 414.8
/ NA
| 111 | D204Y (GAT→TAT) | intE | e14 prophage; putative integrase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (57/54); total (57/54) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 112 total aligned reads displayed.
CTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGC > NC_000913/1200052‑1200340
|
cTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGaa < 3:838105/149‑1 (MQ=255)
tcacGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAg > 3:614667/4‑149 (MQ=255)
tCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAg > 2:30451/1‑149 (MQ=255)
cccGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATagaaga < 1:843023/149‑1 (MQ=255)
ccGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGAt > 4:370737/1‑149 (MQ=255)
ccGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGAt > 4:338132/1‑149 (MQ=255)
ccGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGAt > 1:672509/1‑149 (MQ=255)
cGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGAtt < 4:901313/149‑1 (MQ=255)
tCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGAttttt < 4:435562/149‑1 (MQ=255)
ttttCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGAttttttt < 3:738894/149‑1 (MQ=255)
cTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAtt < 1:72996/149‑1 (MQ=255)
tGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc < 2:693031/149‑1 (MQ=255)
aTGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttcttc < 1:18645/149‑1 (MQ=255)
aTGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttcttc > 2:540226/1‑149 (MQ=255)
aCATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAg < 1:487470/149‑1 (MQ=255)
cATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAgg < 2:826985/149‑1 (MQ=255)
tGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCt > 4:745555/1‑149 (MQ=255)
gAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTc < 4:232598/149‑1 (MQ=255)
aGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAg > 2:511379/1‑149 (MQ=255)
cccAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCgg < 3:499962/149‑1 (MQ=255)
ccAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCggg > 3:693453/1‑149 (MQ=255)
ccAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCggg > 1:437180/1‑149 (MQ=255)
cAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc > 3:921384/1‑125 (MQ=255)
aaaTATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTa > 4:831964/1‑149 (MQ=255)
cGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAAttttt < 3:475579/149‑1 (MQ=255)
gCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTttc > 3:655957/1‑149 (MQ=255)
gCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTttc > 2:125708/1‑149 (MQ=255)
gCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTttc < 2:437180/149‑1 (MQ=255)
cTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTttct < 3:847436/149‑1 (MQ=255)
cTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTttct > 4:382436/1‑149 (MQ=255)
aTTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTcttctt < 1:211019/149‑1 (MQ=255)
tttCATACGCGAAATATCACTTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTg < 3:760382/149‑1 (MQ=255)
tttCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTg > 3:40005/1‑149 (MQ=255)
gcgAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc > 3:579845/1‑103 (MQ=255)
gcgAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc < 4:579845/103‑1 (MQ=255)
cgAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAg < 1:522957/149‑1 (MQ=255)
gAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGgttgt < 3:444205/144‑1 (MQ=255)
gAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGgttgt > 4:444205/1‑144 (MQ=255)
gAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTa > 3:694594/1‑147 (MQ=255)
gAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTa < 4:694594/147‑1 (MQ=255)
gAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGt < 1:209217/149‑1 (MQ=255)
tatCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCt > 3:183630/1‑149 (MQ=255)
atCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTa > 3:894179/1‑149 (MQ=255)
tCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTGCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTaa < 3:587631/149‑1 (MQ=255)
aCCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATg > 3:548947/1‑149 (MQ=255)
tAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTg < 3:757243/139‑1 (MQ=255)
tAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTg > 4:757243/1‑139 (MQ=255)
tAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTg > 4:853858/1‑149 (MQ=255)
aaCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTgg < 3:294734/149‑1 (MQ=255)
aaCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTgg < 1:283127/149‑1 (MQ=255)
aaCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTgg < 1:474052/149‑1 (MQ=255)
aaCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTgg < 1:540226/149‑1 (MQ=255)
aCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTggg > 4:34998/1‑149 (MQ=255)
aCCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTggg < 1:117895/149‑1 (MQ=255)
gCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGTAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTta < 4:548947/149‑1 (MQ=255)
gCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTACGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTta > 1:389573/1‑149 (MQ=255)
ccAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGcc < 3:622329/149‑1 (MQ=255)
cAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCa > 4:112292/1‑149 (MQ=255)
aGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTc < 4:213559/73‑1 (MQ=255)
aGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCag < 3:40040/149‑1 (MQ=255)
gTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc > 2:872438/1‑77 (MQ=255)
gTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc < 1:872438/77‑1 (MQ=255)
tAACCAGCGCTAAAAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCagga < 4:45207/149‑1 (MQ=255)
aaCCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCaggag < 2:672509/149‑1 (MQ=255)
ccAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTg < 2:884142/122‑1 (MQ=255)
ccAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTg > 1:884142/1‑122 (MQ=255)
ccAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATCGCCAGCAGGt > 4:248583/1‑149 (MQ=255)
ccAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGt > 3:138160/1‑149 (MQ=255)
cAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTa < 3:71490/149‑1 (MQ=255)
aGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTAc < 3:745555/149‑1 (MQ=255)
aGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTACGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTAc < 2:389573/149‑1 (MQ=255)
tAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTtctc > 1:581219/1‑149 (MQ=255)
aaCAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTcc < 2:138425/149‑1 (MQ=255)
aCAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCg > 4:764520/1‑149 (MQ=255)
aGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTa < 1:223571/149‑1 (MQ=255)
cATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGt < 4:614667/149‑1 (MQ=255)
aTGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCt > 3:288686/1‑117 (MQ=255)
aTGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCt < 4:288686/117‑1 (MQ=255)
aTGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGtg > 3:894165/1‑149 (MQ=255)
aTGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGtg > 3:452584/1‑149 (MQ=255)
gCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTa > 4:406049/1‑133 (MQ=255)
gCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTa < 3:406049/133‑1 (MQ=255)
gCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGtgctg > 1:703454/1‑149 (MQ=255)
tttCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTgcgc > 2:920301/1‑149 (MQ=255)
tCCCATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCct < 3:445276/149‑1 (MQ=255)
cccATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc > 3:855629/1‑50 (MQ=255)
cccATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCAttc < 4:855629/50‑1 (MQ=255)
cATGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCtt > 4:236320/1‑149 (MQ=255)
aTGTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCttt > 1:428514/1‑149 (MQ=255)
gTAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGa < 1:511379/149‑1 (MQ=255)
tAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGaa > 2:543536/1‑149 (MQ=255)
tAACGATGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGaa > 1:887596/1‑149 (MQ=255)
aTGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTAc > 3:843757/1‑117 (MQ=255)
aTGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTAc < 4:843757/117‑1 (MQ=255)
aTGAGTAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACat > 2:288738/1‑149 (MQ=255)
tAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCGAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTg < 2:863099/137‑1 (MQ=255)
tAGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCGAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTg > 1:863099/1‑137 (MQ=255)
aGCGTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACatcaatca < 3:740344/149‑1 (MQ=255)
gTCTGCGATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGa < 3:338132/149‑1 (MQ=255)
gATATAGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGc < 3:142488/149‑1 (MQ=255)
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CTCCCGGTCTTTTCCTGAATGACATGAAGATGATCATCCCAAATATCGCTAAATTTCATACGCGAAATATCACCTAACCGCTGACCAGTAACCAGCGCTAACAGCATGGCATTTCCCATGTAACGATGAGTAGCGTCTGCGATATCGAAGATTTTTTTCCATTCTTCAAGGCTCAGCCGTTGTCGGGTAATTTTTCTTCTTGGTTGTTTAGTGGCTAATGCTGGGTTATAGCCAGGAGGTACTTCTCCGTAGTGCTGCGCCTCTTTGAAAACATCAATCAGGACGGAGC > NC_000913/1200052‑1200340
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
