Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F176 I0 R1
|
792 |
112.0 |
3729108 |
98.1% |
3658254 |
142.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,025,834 |
C→A |
67.7% |
R108R (CGC→CGA) |
yedP → |
putative mannosyl‑3‑phosphoglycerate phosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,025,834 | 0 | C | A | 67.7%
| 113.6
/ 110.8
| 99 | R108R (CGC→CGA) | yedP | putative mannosyl‑3‑phosphoglycerate phosphatase |
| Reads supporting (aligned to +/- strand): ref base C (17/15); new base A (32/35); total (49/50) |
| Fisher's exact test for biased strand distribution p-value = 6.71e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.26e-01 |
Only 100 of 107 total aligned reads displayed.
CGTTGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGC > NC_000913/2025689‑2025979
|
cGTTGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGagag < 4:208747/149‑1 (MQ=255)
cGTTGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCgag < 2:925815/149‑1 (MQ=255)
ttGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGagaa > 4:124635/1‑149 (MQ=255)
gggCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGagag < 3:415600/144‑1 (MQ=255)
gggCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGagag > 4:415600/1‑144 (MQ=255)
gggCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGagaaaga > 4:610146/1‑149 (MQ=255)
gCTTCAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAAc > 3:710975/1‑149 (MQ=255)
gCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAAc < 3:326037/149‑1 (MQ=255)
cTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACa > 3:373505/1‑149 (MQ=255)
tACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACAt > 4:10845/1‑149 (MQ=255)
aCAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACAtt < 1:324497/149‑1 (MQ=255)
aCAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACAtt < 4:1539/149‑1 (MQ=255)
cAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACAtt > 1:195859/1‑148 (MQ=255)
cAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACAtt < 2:195859/148‑1 (MQ=255)
cAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACAttt > 3:676347/1‑149 (MQ=255)
cAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACAttt < 4:86358/149‑1 (MQ=255)
gTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTaaa > 1:730161/1‑149 (MQ=255)
gTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTaaa > 4:791303/1‑149 (MQ=255)
aCCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCa < 2:615975/149‑1 (MQ=255)
gCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATCCACGa > 1:519872/1‑149 (MQ=255)
gCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTtga < 4:694938/149‑1 (MQ=255)
ccGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTtgat < 3:494851/149‑1 (MQ=255)
cGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTtgatg > 1:799927/1‑149 (MQ=255)
gAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACAtttt < 3:641962/129‑1 (MQ=255)
gAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACAtttt > 4:641962/1‑129 (MQ=255)
aaaaTGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAAtt < 4:278600/133‑1 (MQ=255)
aaaaTGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAAtt > 3:278600/1‑133 (MQ=255)
aaaaTGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTgatgat < 4:896950/149‑1 (MQ=255)
aaaaTGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTgatgat < 3:610146/149‑1 (MQ=255)
aaaaTGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTATTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTgatgat < 2:799927/149‑1 (MQ=255)
gcAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTcgacga < 3:10845/149‑1 (MQ=255)
tCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAAcc > 1:613512/1‑149 (MQ=255)
ccAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCa > 3:746585/1‑149 (MQ=255)
aGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATc > 1:503440/1‑149 (MQ=255)
gCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCg > 1:339729/1‑149 (MQ=255)
ttGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAGGAACATTTTAAATTCACGACTTTtga > 4:821311/1‑124 (MQ=255)
ttGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCAGCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGGGAAGGAACATTTTAAATTCACGACTTTtga < 3:821311/124‑1 (MQ=255)
tGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAAt < 1:391403/149‑1 (MQ=255)
aTGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACgg < 2:376935/149‑1 (MQ=255)
aTGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACgg < 2:730161/149‑1 (MQ=255)
ggCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGa < 2:177719/149‑1 (MQ=255)
gCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGAt > 4:106659/1‑149 (MQ=255)
ggAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGa > 4:332581/1‑145 (MQ=255)
ggAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGa < 3:332581/145‑1 (MQ=255)
gagaTAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAg < 1:207070/149‑1 (MQ=255)
gagaTAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAg < 1:465911/149‑1 (MQ=255)
tAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGt > 4:388499/1‑149 (MQ=255)
tAGACGGGTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGt > 1:843414/1‑149 (MQ=255)
aGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTa < 3:401727/149‑1 (MQ=255)
gACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAg > 1:484147/1‑149 (MQ=255)
gACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAg > 3:453488/1‑149 (MQ=255)
aCGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTtga > 2:657693/1‑100 (MQ=255)
aCGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTtga < 1:657693/100‑1 (MQ=255)
aCGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGc > 1:632594/1‑149 (MQ=255)
aCGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGcc > 2:257331/1‑144 (MQ=255)
aCGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGcc < 1:257331/144‑1 (MQ=255)
aCGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGc < 4:746585/149‑1 (MQ=255)
aCGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGc > 4:82488/1‑149 (MQ=255)
ggTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCa < 3:98301/149‑1 (MQ=255)
gTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAg > 4:817220/1‑149 (MQ=255)
tttCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAggc < 4:452913/149‑1 (MQ=255)
ccACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAggcggc < 2:91130/149‑1 (MQ=255)
cACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGgcggcg > 4:274506/1‑149 (MQ=255)
aCGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTTCGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGgcgc > 2:218352/1‑149 (MQ=255)
aCGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGgcgc > 2:349060/1‑149 (MQ=255)
tctcAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAg < 1:349060/149‑1 (MQ=255)
tctcAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAg > 2:168418/1‑149 (MQ=255)
tcAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCt > 3:17/1‑149 (MQ=255)
aGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTc > 1:179403/1‑149 (MQ=255)
gTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCAt > 3:352608/1‑149 (MQ=255)
gTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCAt < 4:161913/149‑1 (MQ=255)
tATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACgg > 1:678072/1‑110 (MQ=255)
aTTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGa < 2:371646/149‑1 (MQ=255)
aTTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGa < 3:779520/149‑1 (MQ=255)
aTTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGa < 2:599332/149‑1 (MQ=255)
ttAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAg < 2:292570/149‑1 (MQ=255)
ccATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGt > 3:582240/1‑149 (MQ=255)
aTGGCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCg < 1:241534/149‑1 (MQ=255)
ggCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATCCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGt < 2:519872/149‑1 (MQ=255)
gCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTa > 1:51786/1‑149 (MQ=255)
gCGAAATCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTa < 3:647785/149‑1 (MQ=255)
aTCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCt > 3:813924/1‑149 (MQ=255)
tCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTaa > 1:756015/1‑144 (MQ=255)
tCAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTaa < 2:756015/144‑1 (MQ=255)
cAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGTCGATGCAACCATCGCCGAATAGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTaa < 4:523864/149‑1 (MQ=255)
cAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTaa < 2:484147/149‑1 (MQ=255)
cAGCCTGGTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTaa < 4:453488/149‑1 (MQ=255)
ccTGGTTTTGAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCt > 1:590569/1‑149 (MQ=255)
cTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATTGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTg > 2:537679/1‑149 (MQ=255)
ggTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCGTGAGGCGTCGGTAACGCTAATCTGgc < 4:676347/149‑1 (MQ=255)
gTTTTAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGgcg > 3:133614/1‑149 (MQ=255)
ttttAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGgcgc > 2:353488/1‑149 (MQ=255)
ttttAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGgcgc > 2:215091/1‑149 (MQ=255)
ttAAATACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGa < 3:106659/149‑1 (MQ=255)
aaaTACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACa > 4:502968/1‑149 (MQ=255)
aTACGCTACGAGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGt < 2:339729/149‑1 (MQ=255)
acgctacgaGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGa > 3:88198/1‑149 (MQ=255)
tacgcGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAg > 2:363973/1‑149 (MQ=255)
tacgaGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAg < 4:591890/149‑1 (MQ=255)
acgcGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGc < 2:503440/149‑1 (MQ=255)
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CGTTGGGGCTACAAGGTTTACCGCTGATTGCCGAAAATGGCGCAGTGATCCAGCTTGCTGAGCAATGGCAGGAGATAGACGGTTTTCCACGCATCATCTCAGGTATTAGCCATGGCGAAATCAGCCTGGTTTTAAATACGCTACGCGAGAAAGAACATTTTAAATTCACGACTTTTGATGATGTCGACGATGCAACCATCGCCGAATGGACGGGATTAAGCCGTAGCCAGGCGGCGCTGACGCAGCTTCATGAGGCGTCGGTAACGCTAATCTGGCGCGACAGTGACGAGC > NC_000913/2025689‑2025979
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
