Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F176 I0 R1
|
792 |
112.0 |
3729108 |
98.1% |
3658254 |
142.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,232,033 |
G→T |
75.7% |
A64S (GCG→TCG) |
cdd → |
cytidine/deoxycytidine deaminase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,232,033 | 0 | G | T | 75.7%
| 192.4
/ 88.8
| 107 | A64S (GCG→TCG) | cdd | cytidine/deoxycytidine deaminase |
| Reads supporting (aligned to +/- strand): ref base G (13/13); new base T (36/45); total (49/58) |
| Fisher's exact test for biased strand distribution p-value = 6.56e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.91e-02 |
Only 100 of 107 total aligned reads displayed.
ATCTGCACTGGAACCTATTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAACAAAGCGCGATCAGCCACGCCT > NC_000913/2231894‑2232177
|
aTCTGCACTGGAACCTATTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGc > 4:606100/1‑149 (MQ=255)
cTGGAACCTATTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTc < 2:83852/149‑1 (MQ=255)
cTGGAACCTATTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCACTGTc < 3:606100/149‑1 (MQ=255)
gAACCTATTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGaa > 1:876099/1‑149 (MQ=255)
aCCTATTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAAtt < 2:363334/149‑1 (MQ=255)
ccTATTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAAttt > 4:353516/1‑149 (MQ=255)
ccTATTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAAttt > 1:827300/1‑149 (MQ=255)
cTATTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAAtttt > 4:414372/1‑149 (MQ=255)
cTATTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAAtttt < 3:432266/149‑1 (MQ=255)
aTTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTaa < 3:647111/149‑1 (MQ=255)
aTTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTaa < 3:103912/149‑1 (MQ=255)
aTTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTaa < 4:469855/149‑1 (MQ=255)
aTTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCAGCTGGCGGCGGCCTGTTCGCGTTCGCCATTGTCGAATTTTaa < 3:731182/149‑1 (MQ=255)
ttCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAAt < 3:353516/149‑1 (MQ=255)
gCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTgg < 2:408552/149‑1 (MQ=255)
aaGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGCCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAAt < 2:792777/149‑1 (MQ=255)
gTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTg > 1:51418/1‑149 (MQ=255)
tACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGAAGCGCTGACATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCGATTGTCGAATTTTAATGTTGGCGCAATTgc > 4:79462/1‑149 (MQ=255)
ttCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTgcgcg > 4:156762/1‑149 (MQ=255)
ttCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTgcgcg > 3:456011/1‑149 (MQ=255)
ccccGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGcgcgcg > 2:783127/1‑149 (MQ=255)
cccGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCgg < 4:636157/149‑1 (MQ=255)
cccGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCgg > 2:356932/1‑149 (MQ=255)
accGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCCCGCgg > 4:599884/2‑149 (MQ=255)
gCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGgtgt < 4:543244/149‑1 (MQ=255)
tttGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGa < 1:455581/149‑1 (MQ=255)
ttgttgACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAg < 1:783127/149‑1 (MQ=255)
ttgACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTc > 4:752355/1‑110 (MQ=255)
ttgACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTc < 3:752355/110‑1 (MQ=255)
ggggAGCAAGTCTCATCGCTGAAGAGCGCCACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTg < 2:581344/149‑1 (MQ=255)
ggggAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGTGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGCGAGCGGAACCTg < 4:781383/149‑1 (MQ=255)
ggggAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTg < 1:750951/149‑1 (MQ=255)
ggggAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTg < 3:336060/149‑1 (MQ=255)
ggggAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTg < 3:242316/149‑1 (MQ=255)
ggAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGt < 1:262878/149‑1 (MQ=255)
ggAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGt > 4:78954/1‑149 (MQ=255)
aGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTAt < 3:303688/149‑1 (MQ=255)
cAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTa < 2:537475/146‑1 (MQ=255)
cAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTa > 1:537475/1‑146 (MQ=255)
gTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTg < 1:415661/140‑1 (MQ=255)
tctcATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGt < 2:682738/149‑1 (MQ=255)
tctcATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGt < 4:456011/149‑1 (MQ=255)
tctcATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGt < 1:672162/149‑1 (MQ=255)
tcATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGt > 3:223834/1‑147 (MQ=255)
tcATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGt < 4:640758/147‑1 (MQ=255)
tcATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGt > 3:640758/1‑147 (MQ=255)
tcATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGt < 4:223834/147‑1 (MQ=255)
tcATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGc > 2:773094/1‑149 (MQ=255)
tcATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGc > 4:133729/1‑149 (MQ=255)
tcATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGc > 1:829884/1‑149 (MQ=255)
tcATCGCTGAAGAGCGCAACGAAGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGc > 2:633984/1‑149 (MQ=255)
aTCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCt > 1:357733/1‑134 (MQ=255)
aTCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCt < 2:357733/134‑1 (MQ=255)
gCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAata > 3:283769/1‑149 (MQ=255)
cTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAatat > 4:833084/1‑149 (MQ=255)
tGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATg < 3:599884/149‑1 (MQ=255)
gAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATgg < 2:876099/149‑1 (MQ=255)
agagCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGaa < 3:833084/149‑1 (MQ=255)
agagCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCAATGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGaa < 2:79130/149‑1 (MQ=255)
cgcAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTa < 1:58740/149‑1 (MQ=255)
gcAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTAt < 4:510725/149‑1 (MQ=255)
cAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTAtt < 4:283769/149‑1 (MQ=255)
cAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAACTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTAtt < 3:78954/149‑1 (MQ=255)
cAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTAtt < 3:824583/149‑1 (MQ=255)
cAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTAtt < 2:343263/149‑1 (MQ=255)
aaCGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTg > 1:453998/1‑149 (MQ=255)
aaCGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTg > 2:347928/1‑149 (MQ=255)
ggACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACaa > 3:385890/1‑149 (MQ=255)
ggACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACaa > 1:473458/1‑149 (MQ=255)
ggACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTTCGACaa > 3:817741/1‑149 (MQ=255)
gAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGgt < 1:369450/93‑1 (MQ=255)
gAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGgt > 2:369450/1‑93 (MQ=255)
aCGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGt < 1:521209/113‑1 (MQ=255)
aCGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGt > 2:521209/1‑113 (MQ=255)
ggCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTc < 3:455618/149‑1 (MQ=255)
gCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCa > 4:485613/1‑149 (MQ=255)
gCATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCa < 4:510953/149‑1 (MQ=255)
cATTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCAt < 4:47668/149‑1 (MQ=255)
aTTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCa > 4:557091/1‑147 (MQ=255)
aTTCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCa < 3:557091/147‑1 (MQ=255)
ttCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGc > 4:28311/1‑149 (MQ=255)
ttCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGc < 3:587739/149‑1 (MQ=255)
ttCGCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGc > 1:271033/1‑149 (MQ=255)
ttCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGc > 4:151880/1‑149 (MQ=255)
gCACTACTTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGa > 4:659390/1‑149 (MQ=255)
actactTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAAc > 1:106150/1‑149 (MQ=255)
actactTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAAc > 3:753919/1‑149 (MQ=255)
ctTCCGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAACAAAg < 1:128475/149‑1 (MQ=255)
ttCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAACAAAgc > 1:89425/1‑149 (MQ=255)
ccGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAACAAAgcgc < 2:51418/149‑1 (MQ=255)
ccGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAACAAAgcgc < 3:801619/149‑1 (MQ=255)
cGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCAt < 4:548895/134‑1 (MQ=255)
cGCTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCAt > 3:548895/1‑134 (MQ=255)
cGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAACAAAGcgcg > 3:401751/1‑149 (MQ=255)
cTGGCGGCGGCCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAACAAAGCGCGAt < 3:21407/149‑1 (MQ=255)
ggcggcggcCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAACAAAGCGCGATCa < 2:674539/149‑1 (MQ=255)
cggcggcCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTTCGACAATGCAGCAAACCGTTCATGCCGAACAAAGCGCGATCAGc < 4:817741/149‑1 (MQ=255)
gcCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAACAAAGCGCGATCAGCCACgt < 1:520732/149‑2 (MQ=255)
gcCTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAACAAAGCGCGATCAGCCACGc > 3:150185/1‑149 (MQ=255)
cTGTTCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAACAAAGCGCGATCAGCCACGCCt > 2:481474/1‑149 (MQ=255)
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ATCTGCACTGGAACCTATTCTGGCAGACAAGTACTTCCCCGCTTTGTTGACCGGGGAGCAAGTCTCATCGCTGAAGAGCGCAACGGGGCTGGACGAAGACGCGCTGGCATTCGCACTACTTCCGCTGGCGGCGGCCTGTGCGCGTACGCCATTGTCGAATTTTAATGTTGGCGCAATTGCGCGCGGTGTGAGCGGAACCTGGTATTTCGGTGCCAATATGGAATTTATTGGTGCGACAATGCAGCAAACCGTTCATGCCGAACAAAGCGCGATCAGCCACGCCT > NC_000913/2231894‑2232177
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
