Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F176 I0 R1
|
792 |
112.0 |
3729108 |
98.1% |
3658254 |
142.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,282,375 |
C→T |
100% |
H582Y (CAC→TAC) |
yejH → |
putative ATP‑dependent DNA or RNA helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,282,375 | 0 | C | T | 100.0%
| 419.3
/ NA
| 112 | H582Y (CAC→TAC) | yejH | putative ATP‑dependent DNA or RNA helicase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (54/58); total (54/58) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 112 total aligned reads displayed.
TCCCGCTGCGCTGGATCACCGCCGCCGATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGCACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTAATTTAAGAGAGAAAGAAA > NC_000913/2282229‑2282517
|
tCCCGCTGCGCTGGATCACCGCCGCCGATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTAc < 4:371058/149‑1 (MQ=255)
tgGATCACCGCCGCCGATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCgg > 1:209817/1‑149 (MQ=255)
ggATCACCGCCGCCGATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGt > 1:192935/1‑149 (MQ=255)
gATCACCGCCGCCGATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGtt > 3:701787/1‑149 (MQ=255)
tCACCGCCGCCGATATCCTCGCCCAGCAAGCCGTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATCACGCGGTTaa > 4:590561/1‑149 (MQ=255)
aCCGCCGCCGATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATg > 3:667917/1‑149 (MQ=255)
ccgccgccgATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATgg > 2:444212/1‑149 (MQ=255)
cgccgccgATATCCTCGCCGAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGt > 4:237899/1‑149 (MQ=255)
gccgccgATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTa < 1:564844/149‑1 (MQ=255)
gccgccgATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTa < 2:540592/149‑1 (MQ=255)
gccgccgATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTa < 2:209817/149‑1 (MQ=255)
ccgccgATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAg > 1:158264/1‑149 (MQ=255)
gccgATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGtt > 4:307535/1‑149 (MQ=255)
ccgATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGttt < 2:158264/149‑1 (MQ=255)
atatCCTCGCCCAGCAAGCCTTATTGCTACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTttga < 1:276481/149‑1 (MQ=255)
atatCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTttga > 3:201714/1‑149 (MQ=255)
ccTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTttgattga < 4:543310/149‑1 (MQ=255)
ccTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTttga > 3:350648/1‑145 (MQ=255)
ccTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTttga < 4:350648/145‑1 (MQ=255)
cTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTtgattgat < 3:210688/149‑1 (MQ=255)
cTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTtgattgat < 4:713088/149‑1 (MQ=255)
tCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATg > 2:203664/1‑149 (MQ=255)
tCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATg < 1:127228/149‑1 (MQ=255)
ccAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGtata > 1:937364/1‑149 (MQ=255)
cAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATaa > 4:699811/1‑149 (MQ=255)
gCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGAt > 1:387139/1‑149 (MQ=255)
gCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGAt > 3:128258/1‑149 (MQ=255)
cTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTg > 2:199124/1‑149 (MQ=255)
ttATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGa < 1:783411/149‑1 (MQ=255)
tATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAg < 4:463676/149‑1 (MQ=255)
aTTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGt > 4:329386/1‑149 (MQ=255)
aTTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGt > 3:881737/1‑149 (MQ=255)
ttGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGta > 4:321187/1‑149 (MQ=255)
gACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGa > 3:244711/1‑149 (MQ=255)
acacCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGaa < 3:745185/149‑1 (MQ=255)
acacCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGaa < 3:590561/149‑1 (MQ=255)
ccGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTtgattgat < 2:849272/122‑1 (MQ=255)
ccGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTtgattgat > 1:849272/1‑122 (MQ=255)
ccGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATg > 4:508081/1‑123 (MQ=255)
ccGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATg < 3:508081/123‑1 (MQ=255)
ccGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAAtctc > 3:268044/1‑149 (MQ=255)
ccGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAAtctc > 2:604810/1‑149 (MQ=255)
ttttGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGa > 3:592537/1‑132 (MQ=255)
ttttGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGa < 4:592537/132‑1 (MQ=255)
tcgtcgCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCtttt > 2:833509/1‑149 (MQ=255)
gtcgCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGAt < 1:541675/122‑1 (MQ=255)
gtcgCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGAt > 2:541675/1‑122 (MQ=255)
gtcgCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGc < 4:268044/149‑1 (MQ=255)
gCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCAt > 2:920479/1‑148 (MQ=255)
gCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCAt < 1:920479/148‑1 (MQ=255)
gCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGGGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCAt > 4:504756/1‑148 (MQ=255)
cccGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATAc < 1:156139/149‑1 (MQ=255)
ccGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACg > 3:595242/1‑149 (MQ=255)
ccGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACg > 4:123/1‑149 (MQ=255)
ccGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACg > 1:323621/1‑149 (MQ=255)
cGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAACCTCGCCCGCTTTTGCATACGc > 4:872772/1‑149 (MQ=255)
aTGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCaaa < 1:894622/149‑1 (MQ=255)
tGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAg < 1:371907/149‑1 (MQ=255)
gAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGc > 1:328724/1‑149 (MQ=255)
aaaGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCa < 4:602956/149‑1 (MQ=255)
aGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGa < 1:438810/149‑1 (MQ=255)
cAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTttga < 4:365688/87‑1 (MQ=255)
cAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTttga > 3:365688/1‑87 (MQ=255)
aGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACt < 1:203664/149‑1 (MQ=255)
gCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCAc < 1:148825/141‑1 (MQ=255)
gCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCAc > 2:148825/1‑141 (MQ=255)
gCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGt > 3:103581/1‑149 (MQ=255)
gCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGt > 2:282884/1‑149 (MQ=255)
gCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGt > 2:224605/1‑149 (MQ=255)
gCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTgg < 4:128258/149‑1 (MQ=255)
gCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTgg < 2:728539/149‑1 (MQ=255)
gTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTtgattgat < 1:364990/76‑1 (MQ=255)
gTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTtgattgat > 2:364990/1‑76 (MQ=255)
gTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGt < 2:645271/149‑1 (MQ=255)
ctGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGt < 2:820054/148‑1 (MQ=255)
aaaaaGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGc < 1:645876/149‑1 (MQ=255)
aaaaaGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGc < 3:321187/149‑1 (MQ=255)
aaaaaGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGc > 1:800131/1‑149 (MQ=255)
aaaaaGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGc > 2:3731/1‑149 (MQ=255)
aaaaGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGcc > 4:280883/1‑149 (MQ=255)
aaaGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTttgatt > 2:620329/1‑68 (MQ=255)
aaaGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTttgatt < 1:620329/68‑1 (MQ=255)
aaaGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCt > 3:280719/1‑149 (MQ=255)
gtgtTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTa < 3:175847/149‑1 (MQ=255)
tgtTCGATTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAg > 1:338527/1‑149 (MQ=255)
aTTACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGAt < 1:604810/149‑1 (MQ=255)
ttACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGAtt > 3:346303/1‑149 (MQ=255)
tACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGcc < 1:297869/136‑1 (MQ=255)
tACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGcc > 2:297869/1‑136 (MQ=255)
tACGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTa < 4:701787/149‑1 (MQ=255)
aCGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGGTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTaa < 2:202851/149‑1 (MQ=255)
cGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTTATGTATAAGGCGATTGAGTATAGAATCTCGCCAGCTTTTGCATACACAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTAAt < 4:881737/149‑1 (MQ=255)
cGAAGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTAAt < 3:463239/149‑1 (MQ=255)
aGGTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTAATTTa > 3:80849/1‑149 (MQ=255)
ggTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTAATTTaa < 2:294910/149‑1 (MQ=255)
ggTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTAATTTaa < 2:411048/149‑1 (MQ=255)
ggTCGTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTAATTTaa < 1:190086/149‑1 (MQ=255)
gTTTTCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTAATTTAagaga < 4:782084/149‑1 (MQ=255)
tCGTCTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTAATTTAAGAGagaaa < 2:338527/149‑1 (MQ=255)
cTGGCGTACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTAATTTAAGAGAgaaagaaa < 2:328724/149‑1 (MQ=255)
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TCCCGCTGCGCTGGATCACCGCCGCCGATATCCTCGCCCAGCAAGCCTTATTGCGACACCCGGATTTTGTCGTCGCCCGCATGAAAGGCCAGTACTGGCAGGTGCGTGAAAAAGTGTTCGATTACGAAGGTCGTTTTCGTCTGGCGCACGAATTACGCGGTTAATGGTAGTTTTGATTGATGTATAAGGCGATTGAGTATAGAATCTCGCCCGCTTTTGCATACGCAAAGCAGATCACTTACCTGTTGCTGGGTCGCCTGTAGCAGGATTAATTTAAGAGAGAAAGAAA > NC_000913/2282229‑2282517
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
