Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A19 F34 I0 R1
|
470 |
116.5 |
4231616 |
98.1% |
4151215 |
142.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,370,029 |
T→A |
6.5% |
intergenic (+26/‑187) |
pspE → / → ycjM |
thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,370,029 | 0 | T | A | 6.5%
| 411.7
/ 13.9
| 122 | intergenic (+26/‑187) | pspE/ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
| Reads supporting (aligned to +/- strand): ref base T (53/61); new base A (4/4); total (57/65) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.05e-01 |
Only 100 of 125 total aligned reads displayed.
GTGTATTGCAATGCCGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTA > NC_000913/1369881‑1370176
|
gtgtATTGCAATGCCGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTAt < 3:640642/149‑1 (MQ=255)
tgtATTGCAATGCCGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATg > 4:210709/1‑149 (MQ=255)
gtATTGCAATGCCGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATgc < 1:1010188/149‑1 (MQ=255)
gCAATGCCGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑t > 2:88763/1‑149 (MQ=255)
gCAATGCCGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑t < 4:278059/149‑1 (MQ=255)
aaTGCCGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑ttt > 3:911653/1‑149 (MQ=255)
aaTGCCGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑ttt < 2:53902/149‑1 (MQ=255)
aTGCCGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCATAAGCGCCgctca < 3:769686/149‑5 (MQ=255)
gCCGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑tttttt < 1:287483/149‑1 (MQ=255)
gCCGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑tttttt > 3:314180/1‑149 (MQ=255)
ccGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCATAAGCGCCgctcatgg < 4:237649/149‑8 (MQ=255)
ccGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCATAAGCGCCgctcatgg < 4:408364/149‑8 (MQ=255)
ccGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCATAAGCGCCgctcatgg < 2:561367/149‑8 (MQ=255)
cGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑tttttttt < 3:876843/149‑1 (MQ=255)
ggACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑ttttttttt < 2:987922/149‑1 (MQ=255)
gACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAGCGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTc < 4:858874/149‑1 (MQ=255)
aCGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCt < 4:702778/149‑1 (MQ=255)
gCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑Gt < 2:702243/149‑1 (MQ=255)
cAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGCTGAGAACGCCGGGGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGGTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTGTTCT‑GTca > 2:498689/1‑149 (MQ=255)
caagcaaAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTAtt < 4:314180/149‑1 (MQ=255)
caagcaaAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTAtt < 3:611604/149‑1 (MQ=255)
aagcaaAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTAttt > 4:180934/1‑149 (MQ=255)
aagcaaAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTAttt > 1:53707/1‑149 (MQ=255)
aagcaaAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTAttt > 1:885453/1‑149 (MQ=255)
aagcaaAAGAGAGCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCAGGAGCGGCGCTTATGCGCCGTTTTTTTTTTCT‑GTCACACCTTAtt < 1:996742/149‑1 (MQ=255)
aaaGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATc > 3:722276/1‑149 (MQ=255)
gagaTCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATcccc < 4:293905/149‑1 (MQ=255)
aTCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACTATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATa < 4:257062/149‑1 (MQ=255)
tCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAg > 1:603182/1‑149 (MQ=255)
ttAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTAt > 1:1054562/1‑103 (MQ=255)
ttAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTAt < 2:1054562/103‑1 (MQ=255)
ttAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATTGatt > 2:300436/1‑149 (MQ=255)
cGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCGTTTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGattatt < 1:1053798/149‑1 (MQ=255)
cGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTAttt < 2:781195/149‑1 (MQ=255)
cGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTAttt < 3:180934/149‑1 (MQ=255)
gggATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCa > 1:779069/1‑149 (MQ=255)
ggATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAg < 2:932411/149‑1 (MQ=255)
gATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGc < 3:780170/149‑1 (MQ=255)
cACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAAt > 4:1032303/1‑149 (MQ=255)
gcGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGTCGAAGGTCAAAGGTTAAAAGAATTCACCATGGGCGGCTCTAATGCACCG‑TTTTTTTTTCT‑GTCACCCATAATTTACATCCCAATAGAGTATTGGTTTCAGCCCAC‑AAATa < 2:1028388/148‑1 (MQ=255)
aCGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATa < 4:1034259/149‑1 (MQ=255)
aCGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATa > 2:805575/1‑149 (MQ=255)
gaACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCtttt > 2:956211/1‑149 (MQ=255)
aCGCCGTTGGCTTGAACGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGCTCGTCCCTTATGCGCCG‑TTTTTTTTTCT‑ATCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑ACATACGCCTTTTc < 2:1051709/149‑1 (MQ=255)
gCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTAtt < 1:22277/101‑1 (MQ=255)
gCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTccc < 2:779069/149‑1 (MQ=255)
cGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTg < 1:459322/149‑1 (MQ=255)
ggCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTaa > 1:248003/1‑149 (MQ=255)
cTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTaaaaa > 3:366574/1‑149 (MQ=255)
tGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTaaaaaa < 1:331720/149‑1 (MQ=255)
gACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGAtt > 4:481563/1‑149 (MQ=255)
cATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTc < 1:830161/149‑1 (MQ=255)
aTCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGTGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTcc > 4:691939/1‑149 (MQ=255)
aTCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTc < 1:486510/148‑1 (MQ=255)
tCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCt < 2:885453/149‑1 (MQ=255)
tCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCt > 3:397129/1‑149 (MQ=255)
cAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCg < 4:386022/149‑1 (MQ=255)
tGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGa < 3:749918/149‑1 (MQ=255)
gCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTTTGGCCACACCTTATTAACACCCCCTTAGATTATTGGTGTC‑GCCCACAAAAAACCTTTTTTCCCTGTAAAAAATTGTTTTCCTGcttac > 4:492634/1‑145 (MQ=255)
ggTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAAc < 1:88763/149‑1 (MQ=255)
cAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCt > 2:751744/1‑149 (MQ=255)
aaaGGTTAAAAGAATTGACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTGTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTg < 3:654302/115‑1 (MQ=255)
aaaGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCtt < 4:933844/149‑1 (MQ=255)
aaaGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCtt > 1:582067/1‑149 (MQ=255)
aaaGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCtt < 1:751744/149‑1 (MQ=255)
aaaGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCACCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTg > 4:654302/1‑115 (MQ=255)
gTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTaaaa > 4:1032426/1‑140 (MQ=255)
ttAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCt > 3:497063/1‑149 (MQ=255)
aaaaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTtgt < 1:1006848/144‑1 (MQ=255)
aaaaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCa > 3:112759/1‑149 (MQ=255)
aaaaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTAATTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCtttt > 2:1006848/1‑142 (MQ=255)
aaaaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGAGTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCa > 4:559689/1‑149 (MQ=255)
aaaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCaa < 3:583823/149‑1 (MQ=255)
aaaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCaa > 1:634159/1‑149 (MQ=255)
aaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAAt > 1:431598/1‑149 (MQ=255)
aaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAAt < 2:1063953/149‑1 (MQ=255)
aaGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAAt < 1:158633/149‑1 (MQ=255)
gAATTCACCATGAGCGGCGCTTATGCGCCGTTTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGT‑AAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTg > 1:72843/1‑149 (MQ=255)
gAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCacac > 2:173714/1‑48 (MQ=255)
gAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCacac < 1:173714/48‑1 (MQ=255)
gAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTg > 4:23273/1‑149 (MQ=255)
aTTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGAc > 3:859052/1‑149 (MQ=255)
cATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTa > 2:425835/1‑149 (MQ=255)
cATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTa > 4:42570/1‑149 (MQ=255)
cATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTa > 1:365118/1‑149 (MQ=255)
aTGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAt > 1:309677/1‑149 (MQ=255)
aTGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAt > 1:715395/1‑149 (MQ=255)
tGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAtt > 1:53231/1‑149 (MQ=255)
tGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAtt < 1:956211/149‑1 (MQ=255)
aacggcgCATAAGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAtttt > 2:397742/3‑149 (MQ=255)
aacggcgCATAAGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTAtttt > 3:926308/3‑149 (MQ=255)
acggcgCATAAGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTc > 4:768372/2‑149 (MQ=255)
gcgcTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGc > 2:347114/1‑149 (MQ=255)
gcTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCgg > 3:1004682/1‑149 (MQ=255)
gcTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCgg > 3:403895/1‑149 (MQ=255)
cTTATGCGCCGTTTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGT‑AAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGa < 2:72843/149‑1 (MQ=255)
cTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGa < 3:481563/149‑1 (MQ=255)
tATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGagt < 1:300436/149‑1 (MQ=255)
aTGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGagta < 2:846912/149‑1 (MQ=255)
aTGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGagta < 4:954299/149‑1 (MQ=255)
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GTGTATTGCAATGCCGGACGCCAGTCAGGGCAAGCAAAAGAGATCCTTAGCGAGATGGGATATACCCACGTTGAGAACGCCGGTGGCCTGAAAGACATCGCAATGCCGAAGGTCAAAGGTTAAAAGAATTCACCATGAGCGGCGCTTATGCGCCG‑TTTTTTTTTCT‑GTCACACCTTATTTACATCCCCATAGATTATTTGCGTCAGCTCAC‑AAATACGCTTTTTCCCTGGTAAAAAATGATTTCCTGCGTGACTAAAACCCTTGTGCTCAATTGACAGTTTATTTTCTGCGGAGTA > NC_000913/1369881‑1370176
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
