mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 5.5% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 5.2% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 53,376 | G→A | 8.1% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,379 | T→C | 7.8% | E13G (GAG→GGG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 83,587 | A→C | 11.0% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 10.9% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 95,070 | G→A | 5.6% | V141I (GTA→ATA) ‡ | murF → | UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase |
| RA | 95,071 | T→C | 5.5% | V141A (GTA→GCA) ‡ | murF → | UDP‑N‑acetylmuramoyl‑tripeptide:D‑alanyl‑D‑ alanine ligase |
| RA | 100,158 | C→T | 5.3% | P172L (CCG→CTG) | murG → | N‑acetylglucosaminyl transferase |
| RA | 100,161 | A→G | 6.2% | Q173R (CAG→CGG) | murG → | N‑acetylglucosaminyl transferase |
| RA | 111,013 | G→A | 9.8% | intergenic (+29/‑31) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 111,016 | T→C | 9.2% | intergenic (+32/‑28) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 120,154 | Δ1 bp | 13.5% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 13.6% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 164,557 | G→C | 5.2% | intergenic (+23/‑173) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,558 | T→A | 5.1% | intergenic (+24/‑172) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 176,977 | A→G | 5.8% | intergenic (+23/+24) | erpA → / ← yadS | iron‑sulfur cluster insertion protein/UPF0126 family inner membrane protein |
| RA | 176,978 | A→T | 5.8% | intergenic (+24/+23) | erpA → / ← yadS | iron‑sulfur cluster insertion protein/UPF0126 family inner membrane protein |
| RA | 176,979 | C→T | 5.4% | intergenic (+25/+22) | erpA → / ← yadS | iron‑sulfur cluster insertion protein/UPF0126 family inner membrane protein |
| RA | 256,449 | T→C | 8.4% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 8.4% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 9.0% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 282,513 | T→C | 6.1% | L79P (CTG→CCG) | yagE → | 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| RA | 285,882 | T→G | 5.3% | I163S (ATC→AGC) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 285,887 | C→A | 5.3% | L165M (CTG→ATG) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 361,901 | T→G | 5.1% | intergenic (‑41/+25) | lacA ← / ← lacY | thiogalactoside acetyltransferase/lactose permease |
| RA | 361,902 | C→A | 5.2% | intergenic (‑42/+24) | lacA ← / ← lacY | thiogalactoside acetyltransferase/lactose permease |
| RA | 361,968 | G→C | 5.4% | G404G (GGC→GGG) | lacY ← | lactose permease |
| RA | 361,971 | G→C | 5.4% | P403P (CCC→CCG) | lacY ← | lactose permease |
| RA | 361,974 | G→C | 5.4% | G402G (GGC→GGG) | lacY ← | lactose permease |
| RA | 374,682 | C→T | 5.5% | P272L (CCG→CTG) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,683 | G→C | 5.6% | P272P (CCG→CCC) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,688 | G→C | 5.6% | R274P (CGA→CCA) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,689 | A→G | 5.8% | R274R (CGA→CGG) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 420,942 | G→T | 5.1% | intergenic (+32/‑44) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 454,853 | T→C | 6.6% | intergenic (+64/‑280) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 454,856 | G→A | 6.7% | intergenic (+67/‑277) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| RA | 464,354 | C→A | 5.8% | intergenic (+46/‑48) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,356 | A→T | 5.7% | intergenic (+48/‑46) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 464,358 | T→G | 5.7% | intergenic (+50/‑44) | ybaV → / → fadM | putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein/long‑chain acyl‑CoA thioesterase III |
| RA | 475,971 | C→G | 7.3% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 7.3% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 481,225 | T→G | 7.2% | intergenic (‑517/+29) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 481,228 | C→A | 7.0% | intergenic (‑520/+26) | tomB ← / ← acrB | Hha toxicity attenuator; conjugation‑related protein/multidrug efflux system protein |
| RA | 543,207 | A→T | 6.2% | intergenic (+174/+54) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,210 | A→T | 6.3% | intergenic (+177/+51) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 553,885 | G→A | 7.0% | T19I (ACC→ATC) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,887 | G→C | 6.5% | I18M (ATC→ATG) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,889 | T→C | 6.4% | I18V (ATC→GTC) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 569,160 | G→T | 7.0% | D87Y (GAC→TAC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 569,161 | A→C | 6.9% | D87A (GAC→GCC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 604,752 | G→T | 7.3% | intergenic (‑89/+19) | ybdG ← / ← nfsB | mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| RA | 604,753 | A→C | 7.4% | intergenic (‑90/+18) | ybdG ← / ← nfsB | mechanosensitive channel protein, miniconductance/dihydropteridine reductase, NAD(P)H‑dependent, oxygen‑insensitive |
| RA | 657,531 | T→G | 5.2% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 5.0% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 691,390 | G→C | 6.5% | A132G (GCC→GGC) | ybeX ← | putative ion transport |
| RA | 700,388 | A→T | 5.3% | L403M (TTG→ATG) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 700,389 | A→T | 5.3% | H402Q (CAT→CAA) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 710,170 | C→T | 7.9% | intergenic (+54/+30) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 710,173 | A→G | 6.8% | intergenic (+57/+27) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 713,195 | G→A | 5.2% | R70H (CGC→CAC) | seqA → | negative modulator of initiation of replication |
| RA | 756,565 | G→T | 5.5% | G220V (GGC→GTC) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 756,568 | A→C | 5.0% | D221A (GAC→GCC) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 764,078 | A→G | 5.2% | E355E (GAA→GAG) | sucC → | succinyl‑CoA synthetase, beta subunit |
| RA | 764,079 | C→T | 5.2% | L356F (CTC→TTC) | sucC → | succinyl‑CoA synthetase, beta subunit |
| RA | 781,668 | C→T | 7.8% | intergenic (+16/‑417) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,670 | A→T | 7.6% | intergenic (+18/‑415) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,672 | A→G | 7.6% | intergenic (+20/‑413) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 782,991 | A→C | 5.4% | N303H (AAT→CAT) | nadA → | quinolinate synthase, subunit A |
| RA | 805,312 | G→T | 7.3% | E604* (GAG→TAG) ‡ | ybhJ → | aconitase family protein |
| RA | 805,313 | A→C | 7.7% | E604A (GAG→GCG) ‡ | ybhJ → | aconitase family protein |
| RA | 824,949 | T→C | 5.2% | L107P (CTG→CCG) | ybhQ → | inner membrane protein |
| RA | 847,213 | A→T | 5.4% | intergenic (‑94/+45) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,214 | T→A | 5.3% | intergenic (‑95/+44) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,215 | A→T | 5.4% | intergenic (‑96/+43) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 857,576 | T→C | 5.1% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 5.2% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 5.2% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 860,151 | A→G | 5.3% | intergenic (‑123/+23) | ybiV ← / ← ybiW | sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase |
| RA | 860,154 | A→T | 5.7% | intergenic (‑126/+20) | ybiV ← / ← ybiW | sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase |
| RA | 860,157 | C→T | 5.6% | intergenic (‑129/+17) | ybiV ← / ← ybiW | sugar phosphatase; fructose‑1‑P/ribose‑5‑P/glucose‑6‑P phosphatase/putative pyruvate formate lyase |
| RA | 892,455 | G→C | 5.9% | V163V (GTG→GTC) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,457 | T→A | 6.5% | I164N (ATT→AAT) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,459 | G→C | 6.5% | D165H (GAC→CAC) | rimK → | ribosomal protein S6 modification protein |
| RA | 894,952 | T→A | 5.5% | intergenic (+56/‑39) | potF → / → potG | putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATPase |
| RA | 899,656 | T→C | 7.0% | intergenic (+11/+188) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein |
| RA | 899,657 | G→A | 7.7% | intergenic (+12/+187) | rlmC → / ← artJ | 23S rRNA m(5)U747 methyltransferase, SAM‑dependent/arginine ABC transporter periplasmic binding protein |
| RA | 958,769 | C→G | 5.2% | intergenic (+28/‑43) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,771 | A→T | 5.2% | intergenic (+30/‑41) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,773 | C→G | 5.3% | intergenic (+32/‑39) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 964,148 | T→C | 5.7% | intergenic (+36/‑172) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,150 | T→A | 5.8% | intergenic (+38/‑170) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,152 | G→A | 6.0% | intergenic (+40/‑168) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 987,560 | G→C | 8.8% | intergenic (‑578/+25) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 987,561 | G→C | 8.9% | intergenic (‑579/+24) | ompF ← / ← asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase |
| RA | 1,004,741 | T→G | 7.0% | intergenic (+84/‑27) | ycbF → / → pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,004,746 | C→A | 8.3% | intergenic (+89/‑22) | ycbF → / → pyrD | putative periplasmic pilin chaperone/dihydro‑orotate oxidase, FMN‑linked |
| RA | 1,018,986 | A→T | 5.2% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,075,515 | G→T | 5.6% | A1123E (GCG→GAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,075,518 | A→C | 5.3% | L1122R (CTC→CGC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,100,543 | T→A | 5.3% | V83D (GTC→GAC) | ycdZ → | DUF1097 family inner membrane protein |
| RA | 1,100,789 | G→T | 7.4% | intergenic (+2/+62) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,791 | G→C | 7.4% | intergenic (+4/+60) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,793 | A→C | 7.4% | intergenic (+6/+58) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,113,544 | G→A | 6.9% | intergenic (+138/‑35) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,546 | T→A | 7.7% | intergenic (+140/‑33) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,548 | T→C | 7.8% | intergenic (+142/‑31) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,147,980 | G→T | 5.9% | K120N (AAG→AAT) | plsX → | putative phosphate acyltransferase |
| RA | 1,151,873 | T→A | 6.0% | intergenic (+22/‑66) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,151,874 | T→A | 6.1% | intergenic (+23/‑65) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,153,208 | T→C | 7.6% | intergenic (+28/‑92) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,213 | T→A | 7.8% | intergenic (+33/‑87) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,214 | T→A | 7.8% | intergenic (+34/‑86) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,219 | G→A | 7.8% | intergenic (+39/‑81) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,159,335 | G→T | 5.0% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 5.2% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,169,380 | T→C | 8.2% | intergenic (+50/+32) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,382 | C→G | 8.4% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,384 | G→A | 8.5% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,177,646 | T→G | 7.5% | N109K (AAT→AAG) | lolE → | lipoprotein‑releasing system transmembrane protein |
| RA | 1,177,647 | C→A | 7.7% | L110I (CTT→ATT) | lolE → | lipoprotein‑releasing system transmembrane protein |
| RA | 1,205,787 | A→T | 5.3% | pseudogene (57/412 nt) | beeE → | pseudogene, portal protein family, e14 prophage;Phage or Prophage Related |
| RA | 1,205,788 | G→C | 5.3% | pseudogene (58/412 nt) | beeE → | pseudogene, portal protein family, e14 prophage;Phage or Prophage Related |
| RA | 1,205,789 | A→T | 5.0% | pseudogene (59/412 nt) | beeE → | pseudogene, portal protein family, e14 prophage;Phage or Prophage Related |
| RA | 1,227,051 | G→C | 5.9% | intergenic (+83/+20) | ycgJ → / ← pliG | uncharacterized protein/periplasmic inhibitor of g‑type lysozyme |
| RA | 1,227,052 | A→T | 5.8% | intergenic (+84/+19) | ycgJ → / ← pliG | uncharacterized protein/periplasmic inhibitor of g‑type lysozyme |
| RA | 1,227,053 | G→C | 5.9% | intergenic (+85/+18) | ycgJ → / ← pliG | uncharacterized protein/periplasmic inhibitor of g‑type lysozyme |
| RA | 1,260,901 | C→T | 10.5% | intergenic (‑98/+27) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,260,904 | A→G | 9.0% | intergenic (‑101/+24) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,311,830 | A→G | 9.1% | intergenic (+22/+18) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,311,831 | C→T | 8.3% | intergenic (+23/+17) | tonB → / ← yciA | membrane spanning protein in TonB‑ExbB‑ExbD transport complex/acyl‑CoA esterase |
| RA | 1,324,837 | A→C | 6.4% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 5.8% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 6.0% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,335,681 | T→C | 6.8% | intergenic (+223/‑150) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,335,684 | G→A | 7.3% | intergenic (+226/‑147) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,354,220 | C→A | 6.0% | G100V (GGT→GTT) | sapC ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,354,223 | A→G | 6.0% | V99A (GTG→GCG) ‡ | sapC ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,354,224 | C→T | 6.0% | V99M (GTG→ATG) ‡ | sapC ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,354,227 | T→G | 5.2% | T98P (ACC→CCC) | sapC ← | antimicrobial peptide transport ABC transporter permease |
| RA | 1,370,026 | T→A | 6.2% | intergenic (+23/‑190) | pspE → / → ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
| RA | 1,370,029 | T→A | 6.5% | intergenic (+26/‑187) | pspE → / → ycjM | thiosulfate:cyanide sulfurtransferase (rhodanese)/alpha amylase catalytic domain family protein |
| RA | 1,388,283 | C→T | 9.3% | intergenic (+22/+22) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,284 | A→T | 10.2% | intergenic (+23/+21) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,285 | A→G | 10.4% | intergenic (+24/+20) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,406,093 | A→G | 6.6% | I39V (ATC→GTC) | smrA → | DNA endonuclease |
| RA | 1,406,098 | C→T | 6.8% | D40D (GAC→GAT) | smrA → | DNA endonuclease |
| RA | 1,413,964 | C→T | 5.5% | intergenic (‑37/+20) | ralR ← / ← recT | Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein |
| RA | 1,426,178 | A→T | 5.7% | intergenic (+96/‑276) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,429,019 | G→T | 6.4% | intergenic (+35/‑30) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,021 | T→A | 6.3% | intergenic (+37/‑28) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,022 | T→A | 6.4% | intergenic (+38/‑27) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,429,024 | A→C | 6.4% | intergenic (+40/‑25) | lomR → / → stfR | pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein |
| RA | 1,441,833 | G→C | 5.5% | intergenic (‑90/+21) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,835 | A→T | 5.4% | intergenic (‑92/+19) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,441,837 | G→C | 5.5% | intergenic (‑94/+17) | hslJ ← / ← ldhA | heat‑inducible lipoprotein involved in novobiocin resistance/fermentative D‑lactate dehydrogenase, NAD‑dependent |
| RA | 1,462,028 | G→A | 8.1% | G379D (GGT→GAT) ‡ | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,462,029 | T→C | 8.1% | G379G (GGT→GGC) ‡ | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,498,892 | A→T | 11.1% | intergenic (+17/‑46) | ydcH → / → rimL | DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,498,894 | C→G | 11.2% | intergenic (+19/‑44) | ydcH → / → rimL | DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,498,896 | A→T | 11.2% | intergenic (+21/‑42) | ydcH → / → rimL | DUF465 family protein/ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,534,897 | A→T | 5.6% | intergenic (+28/+68) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,534,898 | A→T | 5.6% | intergenic (+29/+67) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,534,904 | T→G | 5.1% | intergenic (+35/+61) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,534,905 | T→C | 5.5% | intergenic (+36/+60) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,541,077 | G→C | 5.5% | A505G (GCC→GGC) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,603,724 | A→C | 8.4% | T236P (ACC→CCC) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,603,735 | G→T | 6.5% | G239G (GGG→GGT) | lsrC → | autoinducer 2 import system permease protein |
| RA | 1,642,370 | C→G | 5.0% | intergenic (+303/+119) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,642,373 | C→G | 5.0% | intergenic (+306/+116) | cspF → / ← quuQ | Qin prophage; cold shock protein/Qin prophage; putative antitermination protein Q |
| RA | 1,650,147 | G→A | 5.3% | pseudogene (70/765 nt) | ydfE → | Qin prophage; pseudogene;Phage or Prophage Related |
| RA | 1,650,148 | T→C | 5.1% | pseudogene (71/765 nt) | ydfE → | Qin prophage; pseudogene;Phage or Prophage Related |
| RA | 1,660,194 | A→C | 5.7% | K709T (AAG→ACG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,198 | T→A | 5.5% | A710A (GCT→GCA) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,200 | C→G | 6.2% | A711G (GCC→GGC) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,202 | T→A | 6.2% | C712S (TGC→AGC) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,206 | G→T | 6.1% | R713L (CGT→CTT) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,666,466 | T→G | 5.3% | Y384* (TAT→TAG) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,666,468 | A→T | 5.2% | Q385L (CAG→CTG) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,689,817 | C→A | 5.4% | intergenic (+66/‑35) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,819 | A→T | 5.1% | intergenic (+68/‑33) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,712,337 | A→T | 5.7% | intergenic (+179/‑432) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,712,338 | A→T | 5.7% | intergenic (+180/‑431) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,757,688 | T→A | 6.4% | intergenic (+31/+33) | lpp → / ← ldtE | murein lipoprotein/murein L,D‑transpeptidase |
| RA | 1,795,227 | A→T | 5.5% | intergenic (‑75/+26) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,228 | G→C | 5.5% | intergenic (‑76/+25) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,795,229 | A→T | 6.1% | intergenic (‑77/+24) | btuC ← / ← ihfA | vitamin B12 ABC transporter permease/integration host factor (IHF), DNA‑binding protein, alpha subunit |
| RA | 1,829,328 | C→G | 5.0% | G136A (GGC→GCC) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,829,334 | G→T | 5.2% | P134Q (CCG→CAG) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,863,800 | T→C | 7.2% | intergenic (+34/‑50) | gapA → / → yeaD | glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein |
| RA | 1,863,801 | T→G | 6.9% | intergenic (+35/‑49) | gapA → / → yeaD | glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein |
| RA | 1,863,802 | C→A | 6.8% | intergenic (+36/‑48) | gapA → / → yeaD | glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein |
| RA | 1,863,803 | G→A | 6.8% | intergenic (+37/‑47) | gapA → / → yeaD | glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein |
| RA | 1,880,851 | T→A | 7.7% | intergenic (‑92/+35) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,880,852 | T→A | 7.7% | intergenic (‑93/+34) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,883,027 | C→G | 5.7% | intergenic (+30/‑161) | dmlA → / → yeaV | D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase/putative transporter |
| RA | 1,910,295 | A→T | 5.0% | D7V (GAC→GTC) | yebQ → | putative transporter |
| RA | 1,950,292 | C→G | 5.2% | A77A (GCG→GCC) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,950,295:1 | +C | 5.1% | coding (228/1773 nt) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,950,306 | C→G | 5.1% | G73R (GGC→CGC) | aspS ← | aspartyl‑tRNA synthetase |
| RA | 1,977,223:1 | +A | 6.7% | intergenic (‑84/+43) | motA ← / ← flhC | proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD |
| RA | 1,977,227 | T→A | 7.1% | intergenic (‑88/+39) | motA ← / ← flhC | proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD |
| RA | 1,977,230 | Δ1 bp | 7.3% | intergenic (‑91/+36) | motA ← / ← flhC | proton conductor component of flagella motor/flagellar class II regulon transcriptional activator, with FlhD |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,985,112 | C→G | 7.7% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 1,987,858 | G→C | 6.8% | intergenic (‑100/+15) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,992,083 | G→C | 6.0% | noncoding (35/76 nt) | glyW ← | tRNA‑Gly |
| RA | 1,999,231 | T→A | 7.2% | T84S (ACT→TCT) | dcyD ← | D‑cysteine desulfhydrase, PLP‑dependent |
| RA | 2,032,336 | G→C | 10.5% | intergenic (‑19/+48) | dcm ← / ← yedJ | DNA cytosine methyltransferase/putative HD superfamily phosphohydrolase |
| RA | 2,041,159 | G→A | 5.8% | intergenic (+41/‑216) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,160 | T→G | 5.8% | intergenic (+42/‑215) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,166 | G→T | 5.7% | intergenic (+48/‑209) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,167 | A→C | 5.7% | intergenic (+49/‑208) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,057,595 | T→C | 5.6% | intergenic (+21/+432) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,597 | T→G | 5.8% | intergenic (+23/+430) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,599 | T→A | 5.7% | intergenic (+25/+428) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,601 | C→A | 5.7% | intergenic (+27/+426) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,057,603 | G→A | 5.4% | intergenic (+29/+424) | yeeN → / ← asnW | UPF0082 family protein/tRNA‑Asn |
| RA | 2,079,004 | G→C | 6.1% | intergenic (+73/+28) | yoeF → / ← yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| RA | 2,090,122 | A→G | 6.7% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 6.8% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 6.7% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,172,350 | A→T | 6.3% | L175Q (CTG→CAG) | gatD ← | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,172,353 | A→T | 6.2% | L174Q (CTG→CAG) | gatD ← | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,177,428 | C→A | 5.2% | intergenic (‑224/+84) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,229,322 | C→G | 7.6% | intergenic (+257/+116) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,229,323 | C→G | 7.6% | intergenic (+258/+115) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,255,991 | A→T | 7.1% | K213* (AAA→TAA) ‡ | yeiL → | putative transcriptional regulator |
| RA | 2,255,992 | A→T | 7.1% | K213I (AAA→ATA) ‡ | yeiL → | putative transcriptional regulator |
| RA | 2,279,711 | A→T | 5.5% | L17Q (CTG→CAG) | bcr ← | bicyclomycin/cysteine/sulfonamide efflux transporter |
| RA | 2,305,085 | A→G | 10.3% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 10.5% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 10.4% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,581 | A→G | 5.9% | V99A (GTG→GCG) ‡ | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,582 | C→G | 5.8% | V99L (GTG→CTG) ‡ | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,585 | C→G | 5.8% | D98H (GAT→CAT) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,319,586 | C→T | 5.8% | A97A (GCG→GCA) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,325,037:1 | +T | 7.3% | coding (282/1323 nt) | atoE → | short chain fatty acid transporter |
| RA | 2,325,042 | Δ1 bp | 5.0% | coding (287/1323 nt) | atoE → | short chain fatty acid transporter |
| RA | 2,375,483 | A→T | 6.7% | L160L (CTT→CTA) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,375,484 | A→T | 6.7% | L160H (CTT→CAT) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,383,956 | A→T | 7.0% | intergenic (+32/+39) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,383,959 | A→T | 7.0% | intergenic (+35/+36) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,391,414 | C→G | 5.2% | R31P (CGA→CCA) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,414,689 | C→G | 6.8% | intergenic (+17/‑58) | ackA → / → pta | acetate kinase A and propionate kinase 2/phosphate acetyltransferase |
| RA | 2,430,144 | G→C | 6.2% | A32G (GCC→GGC) | purF ← | amidophosphoribosyltransferase |
| RA | 2,474,878 | T→C | 10.3% | intergenic (+22/‑106) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,474,881 | G→A | 10.6% | intergenic (+25/‑103) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,482,839 | C→G | 5.4% | L167F (TTG→TTC) | emrK ← | multidrug resistance efflux pump membrane fusion protein |
| RA | 2,493,563 | T→A | 5.1% | intergenic (‑309/+204) | frc ← / ← yfdX | formyl‑CoA transferase, NAD(P)‑binding/uncharacterized protein |
| RA | 2,518,197 | C→G | 6.7% | noncoding (35/76 nt) | alaW ← | tRNA‑Ala |
| RA | 2,521,344 | C→T | 6.2% | intergenic (+16/+249) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,346 | A→T | 5.9% | intergenic (+18/+247) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,521,348 | A→G | 6.0% | intergenic (+20/+245) | lysV → / ← xapR | tRNA‑Lys/transcriptional activator of xapAB |
| RA | 2,535,981 | G→A | 100% | G50S (GGT→AGT) | crr → | glucose‑specific enzyme IIA component of PTS |
| RA | 2,596,873 | Δ1 bp | 9.1% | intergenic (‑136/+32) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,596,878:1 | +G | 8.2% | intergenic (‑141/+27) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,612,973 | C→G | 5.9% | L358L (CTC→CTG) | hyfR → | hydrogenase‑4 transcriptional activator |
| RA | 2,612,974 | C→G | 5.3% | Q359E (CAG→GAG) | hyfR → | hydrogenase‑4 transcriptional activator |
| RA | 2,622,348:1 | +A | 6.3% | coding (115/639 nt) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,622,354 | Δ1 bp | 6.3% | coding (121/639 nt) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,630,918 | A→T | 5.4% | intergenic (+53/+40) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,630,919 | G→A | 5.4% | intergenic (+54/+39) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,630,920 | T→C | 5.5% | intergenic (+55/+38) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,630,921 | A→T | 6.1% | intergenic (+56/+37) | yfgI → / ← guaA | nalidixic acid resistance protein, putative periplasmic protein/GMP synthetase (glutamine aminotransferase) |
| RA | 2,637,433 | C→T | 8.5% | intergenic (‑77/+41) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,438 | T→G | 9.2% | intergenic (‑82/+36) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,439 | C→A | 8.8% | intergenic (‑83/+35) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,444 | A→G | 8.5% | intergenic (‑88/+30) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,640,668 | G→T | 5.6% | intergenic (‑93/+18) | hisS ← / ← ispG | histidyl tRNA synthetase/1‑hydroxy‑2‑methyl‑2‑(E)‑butenyl 4‑diphosphate synthase |
| RA | 2,653,367 | G→A | 9.9% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 8.3% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,654,142 | T→A | 10.0% | noncoding (288/304 nt) | ryfA → | novel sRNA, function unknown |
| RA | 2,654,143 | T→A | 9.5% | noncoding (289/304 nt) | ryfA → | novel sRNA, function unknown |
| RA | 2,654,144 | T→A | 9.4% | noncoding (290/304 nt) | ryfA → | novel sRNA, function unknown |
| RA | 2,691,169 | A→T | 5.8% | noncoding (172/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,171 | T→A | 5.8% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,173 | A→T | 5.9% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,704,304 | A→G | 6.9% | intergenic (‑241/+31) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,306 | A→T | 7.3% | intergenic (‑243/+29) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,308 | C→T | 7.2% | intergenic (‑245/+27) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,707,320 | A→T | 6.0% | intergenic (‑196/+2) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,707,321 | A→T | 6.6% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,716,030 | T→G | 5.5% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 5.5% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,753,986 | A→T | 9.7% | intergenic (+40/+22) | bamE → / ← ratB | lipoprotein component of BamABCDE OM biogenesis complex/UPF0125 family protein |
| RA | 2,761,620 | T→G | 5.9% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 5.9% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,768,609 | T→C | 8.8% | intergenic (+36/‑56) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,614 | A→C | 8.3% | intergenic (+41/‑51) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,615 | G→T | 9.0% | intergenic (+42/‑50) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,620 | G→A | 8.5% | intergenic (+47/‑45) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,777,571 | A→G | 7.6% | D40G (GAC→GGC) | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,777,573 | A→G | 7.6% | T41A (ACG→GCG) ‡ | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,777,574 | C→T | 7.6% | T41M (ACG→ATG) ‡ | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,777,576 | C→T | 8.1% | P42S (CCG→TCG) | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,778,123 | G→T | 7.2% | intergenic (+341/+23) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,778,124 | A→C | 7.2% | intergenic (+342/+22) | ypjF → / ← ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| RA | 2,800,515 | C→A | 7.1% | intergenic (+40/‑208) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,517 | T→A | 7.3% | intergenic (+42/‑206) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,519 | T→G | 6.5% | intergenic (+44/‑204) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,801,056 | A→T | 9.0% | N31I (AAT→ATT) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,818,392 | A→T | 6.9% | intergenic (‑118/+81) | argY ← / ← argV | tRNA‑Arg/tRNA‑Arg |
| RA | 2,818,393 | A→T | 6.1% | intergenic (‑119/+80) | argY ← / ← argV | tRNA‑Arg/tRNA‑Arg |
| RA | 2,838,222 | A→T | 7.7% | intergenic (‑117/+32) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,866,487 | G→C | 5.1% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 5.1% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,873,915 | A→G | 7.7% | H26H (CAT→CAC) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,917 | G→C | 7.8% | H26D (CAT→GAT) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,919 | C→T | 7.8% | G25D (GGT→GAT) | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,906,607 | C→T | 5.6% | intergenic (+24/+36) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,906,608 | G→C | 5.7% | intergenic (+25/+35) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,906,609 | G→C | 5.6% | intergenic (+26/+34) | ygcG → / ← eno | TPM domain protein, putative phosphatase/enolase |
| RA | 2,918,020 | A→C | 5.7% | intergenic (+207/+25) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,976,754 | T→G | 5.2% | R52R (CGT→CGG) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
| RA | 2,976,758 | C→T | 5.3% | L54L (CTG→TTG) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
| RA | 3,020,510 | G→T | 6.5% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 6.3% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 6.6% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,056,123 | A→C | 6.1% | noncoding (141/183 nt) | ssrS → | 6S RNA inhibits RNA polymerase promoter binding |
| RA | 3,061,817 | G→C | 9.6% | W323S (TGG→TCG) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,061,818 | G→C | 11.4% | W323C (TGG→TGC) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,081,338 | G→C | 5.2% | H100D (CAC→GAC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,131,524 | A→G | 5.1% | S295S (AGT→AGC) | yghQ ← | putative inner membrane polysaccharide flippase |
| RA | 3,156,590 | C→A | 10.7% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 11.4% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,169,260 | Δ1 bp | 5.6% | intergenic (‑29/+24) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,169,265:1 | +T | 6.4% | intergenic (‑34/+19) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,171,852 | C→T | 8.3% | intergenic (+19/+27) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,857 | A→T | 8.8% | intergenic (+24/+22) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,858 | A→T | 8.8% | intergenic (+25/+21) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,863 | A→G | 8.7% | intergenic (+30/+16) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,180,505 | G→T | 5.3% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 5.4% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,276,886 | C→A | 7.9% | intergenic (+33/‑116) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,276,887 | T→C | 6.7% | intergenic (+34/‑115) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,276,890 | G→A | 6.5% | intergenic (+37/‑112) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,276,891 | T→G | 6.7% | intergenic (+38/‑111) | garD → / → prlF | D‑galactarate dehydrogenase/antitoxin of the SohA(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,291,109 | A→T | 6.7% | K766* (AAA→TAA) ‡ | yraJ → | putative outer membrane protein |
| RA | 3,291,110 | A→T | 6.7% | K766I (AAA→ATA) ‡ | yraJ → | putative outer membrane protein |
| RA | 3,309,009 | C→T | 6.9% | intergenic (‑85/+24) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,309,012 | A→G | 10.7% | intergenic (‑88/+21) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,318,079 | A→T | 6.4% | intergenic (‑73/+134) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,318,080 | A→T | 6.5% | intergenic (‑74/+133) | rimP ← / ← metY | ribosome maturation factor for 30S subunits/tRNA‑Met |
| RA | 3,328,182 | A→T | 6.3% | intergenic (+99/+57) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,183 | T→A | 6.2% | intergenic (+100/+56) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,184 | A→T | 6.1% | intergenic (+101/+55) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,350,678 | Δ1 bp | 6.1% | noncoding (102/121 nt) | arcZ → | sRNA positive antisense regulator of rpoS; binds Hfq |
| RA | 3,350,682:1 | +A | 6.3% | noncoding (106/121 nt) | arcZ → | sRNA positive antisense regulator of rpoS; binds Hfq |
| RA | 3,418,628 | G→A | 6.0% | intergenic (+17/‑414) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,418,629 | T→C | 6.0% | intergenic (+18/‑413) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,439,588 | G→C | 8.7% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 8.6% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,471,366 | A→G | 5.8% | intergenic (‑37/+34) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,476,585 | G→A | 6.0% | intergenic (‑145/+22) | yheO ← / ← fkpA | putative PAS domain‑containing DNA‑binding transcriptional regulator/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| RA | 3,477,878 | T→A | 11.5% | intergenic (+20/+29) | slyX → / ← slyD | phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,577,657 | A→G | 6.2% | intergenic (‑65/+74) | gntK ← / ← gntR | gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,577,660 | C→T | 5.7% | intergenic (‑68/+71) | gntK ← / ← gntR | gluconate kinase 2/d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,601,824 | G→C | 5.7% | P88R (CCC→CGC) ‡ | ftsX ← | putative ABC transporter permease |
| RA | 3,601,825 | G→C | 5.7% | P88A (CCC→GCC) ‡ | ftsX ← | putative ABC transporter permease |
| RA | 3,608,695 | C→G | 8.0% | intergenic (+46/+56) | zntA → / ← tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| RA | 3,657,599 | T→A | 7.7% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 7.8% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 8.3% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,714,163:1 | +T | 8.4% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 8.4% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,720,305 | G→A | 5.4% | intergenic (+44/+143) | cspA → / ← hokA | RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small |
| RA | 3,774,207 | C→T | 5.3% | intergenic (+13/‑217) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,214 | C→T | 6.0% | intergenic (+20/‑210) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,215 | A→G | 6.0% | intergenic (+21/‑209) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,222 | A→G | 5.8% | intergenic (+28/‑202) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,781,051 | C→G | 6.4% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,790,300 | A→T | 8.7% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 8.2% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,814,164 | G→A | 5.0% | G78D (GGT→GAT) | dut → | deoxyuridinetriphosphatase |
| RA | 3,885,293 | A→C | 5.5% | N73T (AAC→ACC) | yidC → | membrane protein insertase |
| RA | 3,885,298 | C→A | 5.2% | R75S (CGT→AGT) ‡ | yidC → | membrane protein insertase |
| RA | 3,885,299 | G→C | 5.3% | R75P (CGT→CCT) ‡ | yidC → | membrane protein insertase |
| RA | 3,885,300 | T→G | 5.8% | R75R (CGT→CGG) ‡ | yidC → | membrane protein insertase |
| RA | 3,885,305 | G→T | 5.5% | G77V (GGT→GTT) | yidC → | membrane protein insertase |
| RA | 3,891,502 | C→G | 6.0% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 5.6% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 5.6% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,897,613 | G→A | 6.6% | P36P (CCG→CCA) | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,897,614 | C→G | 6.5% | L37V (CTG→GTG) ‡ | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,897,615 | T→C | 6.5% | L37P (CTG→CCG) ‡ | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,923,376 | A→G | 5.1% | V102A (GTG→GCG) ‡ | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
| RA | 3,923,377 | C→T | 5.3% | V102M (GTG→ATG) ‡ | rsmG ← | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein |
| RA | 3,947,332 | A→T | 6.6% | A212A (GCT→GCA) | hdfR ← | flhDC operon transcriptional repressor |
| RA | 3,947,335 | A→T | 6.6% | S211S (TCT→TCA) | hdfR ← | flhDC operon transcriptional repressor |
| RA | 3,953,432 | C→T | 5.2% | intergenic (+19/‑46) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,433 | A→G | 5.2% | intergenic (+20/‑45) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,436 | C→T | 5.2% | intergenic (+23/‑42) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,437 | A→G | 5.2% | intergenic (+24/‑41) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,959,515 | T→A | 5.8% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,971,996 | T→A | 5.9% | L246Q (CTG→CAG) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| RA | 3,981,102 | T→A | 6.1% | V72V (GTT→GTA) | yifK → | putative APC family amino acid transporter |
| RA | 3,991,334 | T→A | 5.0% | I61N (ATT→AAT) ‡ | cyaA → | adenylate cyclase |
| RA | 3,991,335 | T→A | 5.0% | I61I (ATT→ATA) ‡ | cyaA → | adenylate cyclase |
| RA | 4,049,986 | G→T | 10.0% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,049,989 | A→C | 9.7% | noncoding (91/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,060,261 | G→T | 9.9% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 9.7% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,062,371 | A→T | 6.1% | N42I (AAT→ATT) | yihN → | MFS transporter family protein |
| RA | 4,070,410 | C→A | 6.6% | intergenic (‑9/+105) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,070,413 | T→G | 8.4% | intergenic (‑12/+102) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,117,034 | T→G | 8.9% | E63D (GAA→GAC) | glpK ← | glycerol kinase |
| RA | 4,127,251 | C→T | 6.1% | intergenic (+26/+35) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,127,252 | A→G | 6.6% | intergenic (+27/+34) | rpmE → / ← yiiX | 50S ribosomal subunit protein L31/putative lipid binding hydrolase, DUF830 family protein |
| RA | 4,142,512 | C→A | 5.3% | intergenic (‑291/‑18) | frwA ← / → frwC | putative PTS enzyme: Hpr, enzyme I and II components/putative enzyme IIC component of PTS |
| RA | 4,168,349 | A→G | 5.9% | intergenic (+149/‑23) | rrsB → / → gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| RA | 4,171,569:1 | +T | 15.0% | intergenic (+25/‑68) | rrlB → / → rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| RA | 4,171,780 | G→T | 5.2% | intergenic (+24/‑277) | rrfB → / → murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| RA | 4,171,781 | A→T | 5.0% | intergenic (+25/‑276) | rrfB → / → murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| RA | 4,171,782 | A→T | 5.2% | intergenic (+26/‑275) | rrfB → / → murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| RA | 4,171,783 | A→C | 5.2% | intergenic (+27/‑274) | rrfB → / → murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| RA | 4,171,789 | G→A | 5.1% | intergenic (+33/‑268) | rrfB → / → murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| RA | 4,177,171 | T→A | 6.6% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 6.7% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,262,250 | G→C | 6.8% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,255 | G→C | 6.5% | S196T (AGC→ACC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,286,116 | C→G | 6.3% | G419A (GGC→GCC) | acs ← | acetyl‑CoA synthetase |
| RA | 4,296,060 | C→T | 21.0% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,306,540 | T→C | 6.6% | S20G (AGC→GGC) | yjcS ← | metallo‑beta‑lactamase superfamily protein |
| RA | 4,306,541 | G→A | 6.7% | A19A (GCC→GCT) | yjcS ← | metallo‑beta‑lactamase superfamily protein |
| RA | 4,339,802 | A→G | 5.8% | A240A (GCT→GCC) | adiA ← | arginine decarboxylase |
| RA | 4,339,805 | C→T | 5.7% | Q239Q (CAG→CAA) | adiA ← | arginine decarboxylase |
| RA | 4,353,172 | C→G | 5.5% | intergenic (+91/+28) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,356,445 | A→T | 7.1% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 7.1% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,362,528 | G→A | 7.9% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 8.1% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,366,854 | T→G | 8.7% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 8.7% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,376,633 | C→T | 5.2% | G27G (GGC→GGT) | ecnB → | entericidin B membrane lipoprotein |
| RA | 4,386,126 | C→T | 5.9% | R1082H (CGT→CAT) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,386,129 | A→G | 5.7% | M1081T (ATG→ACG) | mscM ← | mechanosensitive channel protein, miniconductance |
| RA | 4,392,394 | C→G | 6.4% | noncoding (35/76 nt) | glyV → | tRNA‑Gly |
| RA | 4,392,617 | C→G | 7.6% | noncoding (35/76 nt) | glyY → | tRNA‑Gly |
| RA | 4,409,410:1 | +A | 5.0% | coding (136/732 nt) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,422,895 | C→G | 6.5% | A17G (GCC→GGC) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,422,903 | T→C | 5.5% | C20R (TGC→CGC) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,426,592 | T→A | 7.9% | intergenic (+35/+36) | rplI → / ← yjfZ | 50S ribosomal subunit protein L9/uncharacterized protein |
| RA | 4,472,434 | G→A | 8.1% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,472,437 | T→C | 8.2% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,479,012 | A→T | 8.6% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 7.8% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 7.8% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,488,424 | G→T | 6.8% | intergenic (+24/+137) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,488,425 | A→T | 7.0% | intergenic (+25/+136) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,488,426 | A→T | 6.9% | intergenic (+26/+135) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,488,427 | A→C | 6.9% | intergenic (+27/+134) | lptG → / ← yjgR | lipopolysaccharide export ABC permease/DUF853 family protein with NTPase fold |
| RA | 4,604,753 | T→A | 5.1% | S198R (AGT→AGA) | bglJ → | bgl operon transcriptional activator |
| RA | 4,612,330 | G→C | 5.7% | intergenic (+41/‑81) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,612,331 | C→T | 5.6% | intergenic (+42/‑80) | ytjA → / → yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| RA | 4,614,615 | G→A | 8.7% | intergenic (+355/+65) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,614,616 | C→A | 8.8% | intergenic (+356/+64) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,614,622 | T→G | 9.0% | intergenic (+362/+58) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,614,624 | G→C | 8.8% | intergenic (+364/+56) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,614,626 | C→A | 8.7% | intergenic (+366/+54) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,614,632 | T→G | 8.6% | intergenic (+372/+48) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,614,633 | T→C | 9.8% | intergenic (+373/+47) | yjjV → / ← yjjW | putative DNase/putative pyruvate formate lyase activating enzyme |
| RA | 4,636,212 | T→A | 5.3% | L69* (TTA→TAA) | creB → | response regulator in two‑component regulatory system with CreC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423760–3424234 | 3424543–3424238 | 5–784 | 53 [49] | [48] 52 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 213083 = | 81 (0.690) | 7 (0.060) | 7/254 | NT | 7.9% | coding (753/1299 nt) | tilS | tRNA(Ile)‑lysidine synthetase |
| ? | NC_000913 | 213120 = | 84 (0.740) | coding (790/1299 nt) | tilS | tRNA(Ile)‑lysidine synthetase | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 4 (0.040) | 4/244 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 286732 | 97 (0.830) | 5 (0.050) | 5/248 | NT | 5.2% | coding (1338/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter |
| ? | NC_000913 | = 286752 | 91 (0.820) | coding (1358/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter | |||||
| * | ? | NC_000913 | 377435 = | 98 (0.840) | 5 (0.050) | 4/248 | NT | 5.2% | noncoding (101/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 377468 = | 90 (0.810) | noncoding (134/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | NC_000913 | 411213 = | 97 (0.880) | 10 (0.090) | 8/248 | NT | 9.3% | noncoding (136/191 nt) | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 4295835 = | NA (NA) | noncoding (1/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 884909 = | 107 (0.910) | 5 (0.050) | 4/244 | NT | 5.1% | intergenic (+4/+37) | mdfA/ybjH | multidrug efflux system protein/uncharacterized protein |
| ? | NC_000913 | 884940 = | 86 (0.790) | intergenic (+35/+6) | mdfA/ybjH | multidrug efflux system protein/uncharacterized protein | |||||
| * | ? | NC_000913 | 1207790 = | 58 (0.500) | 74 (0.720) | 53/230 | NT | 55.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 66 (0.640) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 57 (0.490) | 58 (0.560) | 46/230 | NT | 50.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 66 (0.640) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1269811 = | 90 (0.770) | 7 (0.060) | 4/246 | NT | 7.6% | intergenic (‑1/‑47) | ldrB/rdlB | toxic polypeptide, small/sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR‑B repeat, with toxic peptide LdrB |
| ? | NC_000913 | 1269849 = | 85 (0.770) | intergenic (‑39/‑9) | ldrB/rdlB | toxic polypeptide, small/sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR‑B repeat, with toxic peptide LdrB | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 144 (1.270) | 102/254 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1934529 | 121 (1.030) | 7 (0.060) | 5/258 | NT | 5.5% | coding (76/1812 nt) | edd | 6‑phosphogluconate dehydratase |
| ? | NC_000913 | = 1934556 | 120 (1.040) | coding (49/1812 nt) | edd | 6‑phosphogluconate dehydratase | |||||
| * | ? | NC_000913 | = 2076499 | 76 (0.650) | 5 (0.050) | 4/242 | NT | 6.5% | coding (192/447 nt) | yeeS | CP4‑44 prophage; putative DNA repair protein |
| ? | NC_000913 | = 2076505 | 74 (0.690) | coding (198/447 nt) | yeeS | CP4‑44 prophage; putative DNA repair protein | |||||
| * | ? | NC_000913 | 2254199 = | 147 (1.260) | 8 (0.070) | 7/254 | NT | 5.7% | intergenic (‑54/+46) | nupX/rihB | nucleoside permease/ribonucleoside hydrolase 2 |
| ? | NC_000913 | 2254233 = | 122 (1.080) | intergenic (‑88/+12) | nupX/rihB | nucleoside permease/ribonucleoside hydrolase 2 | |||||
| * | ? | NC_000913 | 2477002 = | 127 (1.090) | 10 (0.090) | 5/238 | NT | 8.8% | coding (628/936 nt) | dsdC | dsd operon activator; autorepressor |
| ? | NC_000913 | 2477035 = | 93 (0.880) | coding (595/936 nt) | dsdC | dsd operon activator; autorepressor | |||||
| * | ? | NC_000913 | 2727891 = | NA (NA) | 27 (0.240) | 12/250 | NT | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 3148956 | 114 (0.970) | 6 (0.050) | 5/246 | NT | 5.1% | intergenic (+19/+21) | gpr/yqhA | L‑glyceraldehyde 3‑phosphate reductase/UPF0114 family putative inner membrane protein |
| ? | NC_000913 | = 3148961 | 114 (1.040) | intergenic (+24/+16) | gpr/yqhA | L‑glyceraldehyde 3‑phosphate reductase/UPF0114 family putative inner membrane protein | |||||
| * | ? | NC_000913 | 3468351 = | 109 (0.930) | 10 (0.090) | 9/248 | NT | 9.1% | coding (1503/2694 nt) | chiA | periplasmic endochitinase |
| ? | NC_000913 | 3468373 = | 96 (0.870) | coding (1481/2694 nt) | chiA | periplasmic endochitinase | |||||
| * | ? | NC_000913 | = 3542317 | 113 (0.970) | 6 (0.050) | 5/250 | NT | 5.2% | coding (1911/2322 nt) | feoB | ferrous iron transporter protein B and GTP‑binding protein; membrane protein |
| ? | NC_000913 | = 3542340 | 112 (1.000) | coding (1934/2322 nt) | feoB | ferrous iron transporter protein B and GTP‑binding protein; membrane protein | |||||
| * | ? | NC_000913 | 3620351 = | NA (NA) | 3 (0.030) | 3/256 | NT | 100% | coding (1160/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620387 = | 0 (0.000) | coding (1196/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3620562 | NA (NA) | 9 (0.080) | 5/250 | NT | 100% | coding (1371/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3620587 | 0 (0.000) | coding (1396/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3721045 = | 154 (1.320) | 362 (3.120) | 160/260 | NT | 72.8% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 117 (1.010) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | = 4171607 | 51 (0.440) | 45 (0.400) | 10/250 | NT | 48.0% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | NC_000913 | = 4213022 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 4295870 = | NA (NA) | 6 (0.050) | 3/260 | NT | 6.2% | noncoding (36/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | 4295946 = | 91 (0.780) | noncoding (112/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 4542690 | 113 (0.970) | 8 (0.070) | 8/244 | NT | 7.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 104 (0.950) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4628743 = | NA (NA) | 6 (0.050) | 4/248 | NT | 5.8% | noncoding (49/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | 4628776 = | 98 (0.890) | noncoding (82/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||