mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 45 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4148370 = | 97 (0.830) | 3 (0.030) | 3/248 | NT | 3.2% | intergenic (‑53/+162) | yijO/eptC | AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase |
| ? | NC_000913 | 4148393 = | NA (NA) | intergenic (‑76/+139) | yijO/eptC | AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase | |||||
| * | ? | NC_000913 | 4102274 = | 110 (0.940) | 5 (0.050) | 3/248 | NT | 4.5% | coding (585/984 nt) | kdgT | 2‑keto‑3‑deoxy‑D‑gluconate transporter |
| ? | NC_000913 | 4102365 = | 108 (0.980) | coding (676/984 nt) | kdgT | 2‑keto‑3‑deoxy‑D‑gluconate transporter | |||||
| * | ? | NC_000913 | 4096011 = | 142 (1.210) | 4 (0.040) | 4/250 | NT | 2.9% | coding (1438/1470 nt) | rhaB | rhamnulokinase |
| ? | NC_000913 | 4096045 = | 129 (1.160) | coding (1404/1470 nt) | rhaB | rhamnulokinase | |||||
| * | ? | NC_000913 | = 3952352 | 90 (0.770) | 3 (0.030) | 5/250 | NT | 3.3% | coding (152/264 nt) | ilvM | acetolactate synthase 2 small subunit |
| ? | NC_000913 | = 3952361 | 91 (0.820) | coding (161/264 nt) | ilvM | acetolactate synthase 2 small subunit | |||||
| * | ? | NC_000913 | = 3928162 | 80 (0.680) | 3 (0.030) | 3/250 | NT | 3.8% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | NC_000913 | = 3928174 | 75 (0.670) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
| * | ? | NC_000913 | 3825799 = | 360 (3.080) | 5 (0.050) | 5/246 | NT | 1.5% | coding (590/2082 nt) | recG | ATP‑dependent DNA helicase |
| ? | NC_000913 | 3825875 = | 312 (2.840) | coding (666/2082 nt) | recG | ATP‑dependent DNA helicase | |||||
| * | ? | NC_000913 | = 3795026 | 379 (3.240) | 4 (0.040) | 4/246 | NT | 1.1% | coding (98/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_000913 | = 3795059 | 368 (3.350) | coding (131/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II | |||||
| * | ? | NC_000913 | 3792754 = | 483 (4.130) | 8 (0.070) | 10/240 | NT | 1.9% | intergenic (‑203/+72) | kbl/yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| ? | NC_000913 | 3792780 = | 372 (3.470) | intergenic (‑229/+46) | kbl/yibB | glycine C‑acetyltransferase/YibB family protein, function unknown | |||||
| * | ? | NC_000913 | = 3780085 | 364 (3.110) | 4 (0.040) | 4/244 | NT | 1.1% | coding (259/1191 nt) | lldD | L‑lactate dehydrogenase, FMN‑linked |
| ? | NC_000913 | = 3780114 | 374 (3.430) | coding (288/1191 nt) | lldD | L‑lactate dehydrogenase, FMN‑linked | |||||
| * | ? | NC_000913 | = 3774359 | NA (NA) | 17 (0.150) | 13/248 | NT | 3.1% | intergenic (+165/‑65) | mtlA/mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| ? | NC_000913 | = 3774387 | 539 (4.870) | intergenic (+193/‑37) | mtlA/mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent | |||||