Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F69 I0 R1
|
1426 |
148.0 |
5875178 |
97.4% |
5722423 |
123.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,285,261 |
Δ1 bp |
6.4% |
coding (123/711 nt) |
narJ → |
molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,285,261 | 0 | T | . | 6.4%
| 403.9
/ 19.2
| 110 | coding (123/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1 |
| Reads supporting (aligned to +/- strand): ref base T (52/51); new base . (4/3); total (56/54) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.76e-01 |
Only 100 of 110 total aligned reads displayed.
GCAAAACGGAGCCGCATCCATGATCGAACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCC > NC_000913/1285120‑1285403
|
gCAAAACGGAGCCGCATCCATGATCGAACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑Tgg > 3:1327530/1‑149 (MQ=255)
aCGGAGCCGCATCCATGATCGAACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCAtt < 4:1257590/149‑1 (MQ=255)
cATCCATGATCGAACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTc < 4:491639/143‑1 (MQ=255)
cATCCATGATCGAACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTc > 3:491639/1‑143 (MQ=255)
aTCCATGATCGAACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGcgcg < 4:289869/149‑1 (MQ=255)
gATCGAACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTaa < 2:532235/149‑1 (MQ=255)
gATCGAACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTaa < 4:767765/149‑1 (MQ=255)
gATCGAACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTaa > 4:1335497/1‑149 (MQ=255)
aCTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAAcgacga < 3:1335497/149‑1 (MQ=255)
tCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAac < 2:376475/142‑1 (MQ=255)
tCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAac > 1:376475/1‑142 (MQ=255)
gTGATTGTATCGCGTCTCCTTGACTATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGa > 4:89382/1‑149 (MQ=255)
gTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATgc < 1:1117026/113‑1 (MQ=255)
gTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATgc > 2:1117026/1‑113 (MQ=255)
gTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAAcgacga > 2:601529/1‑145 (MQ=255)
gTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAAcgacga < 1:601529/145‑1 (MQ=255)
tCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGTATCCGCTCGa < 3:89382/149‑1 (MQ=255)
ttGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGgcg > 2:1037968/1‑149 (MQ=255)
ccGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATgc < 4:1182682/86‑1 (MQ=255)
ccGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATgc > 3:1182682/1‑86 (MQ=255)
aTGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGaa < 1:1394286/149‑1 (MQ=255)
tgcCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCt < 1:723793/93‑1 (MQ=255)
tgcCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCt > 2:723793/1‑93 (MQ=255)
tgcCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTg < 1:67022/94‑1 (MQ=255)
tgcCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGgcg > 3:520529/1‑133 (MQ=255)
tgcCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGgcg < 4:520529/133‑1 (MQ=255)
cTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCAtttt < 3:193181/87‑1 (MQ=255)
cTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCAtttt > 4:193181/1‑87 (MQ=255)
taaggCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAac > 2:146383/4‑100 (MQ=255)
taaggCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAac < 1:146383/97‑1 (MQ=255)
tATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGAc > 4:813081/1‑149 (MQ=255)
gcagcaTCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACa > 1:761959/1‑131 (MQ=255)
gcagcaTCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACa < 2:761959/131‑1 (MQ=255)
gcagcaTCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTg > 4:1064049/1‑149 (MQ=255)
caTCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGcgc > 4:437677/1‑147 (MQ=255)
aTCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTgg > 1:192344/1‑145 (MQ=255)
aTCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTgg < 2:192344/145‑1 (MQ=255)
tCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAacgac < 1:670807/93‑1 (MQ=255)
tCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAacgac > 2:670807/1‑93 (MQ=255)
tCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTc > 1:1072866/1‑136 (MQ=255)
tCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTc < 2:1072866/136‑1 (MQ=255)
tCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCcgcg > 1:152665/1‑149 (MQ=255)
aacaaGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGAc > 2:578073/1‑137 (MQ=255)
aacaaGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGAc < 1:578073/137‑1 (MQ=255)
aacaaGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGcc > 2:725357/1‑149 (MQ=255)
acaaGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGTCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGAt > 4:853607/1‑93 (MQ=255)
acaaGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTaa < 3:839354/86‑1 (MQ=255)
acaaGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTaa > 4:839354/1‑86 (MQ=255)
acaaGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGAt < 3:853607/93‑1 (MQ=255)
acaaGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGaa > 2:313351/1‑127 (MQ=255)
acaaGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGAcc > 4:1211102/1‑137 (MQ=255)
caaGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCa > 4:319542/1‑116 (MQ=255)
caaGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCa < 3:319542/116‑1 (MQ=255)
agagATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCGCGGCCACgg < 3:437677/149‑2 (MQ=255)
gagaTGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGtt < 2:35012/128‑1 (MQ=255)
gagaTGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGtt > 1:35012/1‑128 (MQ=255)
agaTGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGAt < 3:186035/101‑1 (MQ=255)
agaTGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGAt > 4:186035/1‑101 (MQ=255)
agaTGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCa > 1:122306/1‑149 (MQ=255)
gTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGtt < 4:1294156/123‑1 (MQ=255)
gTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGtt > 3:1294156/1‑123 (MQ=255)
ggCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGt < 2:152665/149‑1 (MQ=255)
ttGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGaa < 2:122306/149‑1 (MQ=255)
ttGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGaa < 1:1037968/149‑1 (MQ=255)
ccGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACAt < 3:813081/149‑1 (MQ=255)
ccGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACAt < 1:725357/149‑1 (MQ=255)
gcgTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGATGATGTATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACAtgt < 3:1064049/149‑1 (MQ=255)
gAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCAttt > 3:980498/1‑41 (MQ=255)
gAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACg > 4:1428275/1‑149 (MQ=255)
aTCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCAc < 3:1315530/120‑1 (MQ=255)
aTCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCAc > 4:1315530/1‑120 (MQ=255)
aTCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGttt > 2:690330/1‑131 (MQ=255)
aTCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGttt < 1:690330/131‑1 (MQ=255)
aTCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGaa > 1:573704/1‑149 (MQ=255)
tGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACAt < 1:132285/134‑1 (MQ=255)
cAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCcgc > 4:171255/1‑149 (MQ=255)
aaaaGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGt < 2:27552/89‑1 (MQ=255)
aaaaGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGt > 1:27552/1‑89 (MQ=255)
aaaaGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGtt < 1:920598/123‑1 (MQ=255)
aaaaGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGtt > 2:920598/1‑123 (MQ=255)
aaaaGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCcgcg > 1:357241/1‑149 (MQ=255)
aaaaGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCcgcg > 1:314810/1‑149 (MQ=255)
aaGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGAttt < 3:783409/40‑1 (MQ=255)
aaGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGAttt > 4:783409/1‑40 (MQ=255)
aaGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTATTGCTGTTTGAACATGTGCACGGCGAATCACGCGAc > 3:973511/1‑149 (MQ=255)
aaaTGCCCA‑GCGCATGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGtt > 4:887292/3‑111 (MQ=255)
gATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCGCGGCCACggt < 3:1160678/104‑3 (MQ=255)
gATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCgg > 3:496252/1‑149 (MQ=255)
aaTGCCCA‑GCGCATGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTg < 3:368524/90‑1 (MQ=255)
aaTGCCCA‑GCGCATGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTg > 4:368524/2‑91 (MQ=255)
aaTGCCCA‑GCGCATGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAAt < 2:776955/135‑1 (MQ=255)
aaTGCCCA‑GCGCATGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAAt > 1:776955/2‑136 (MQ=255)
aTGCCCA‑GCGCATGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGc > 2:1249351/1‑149 (MQ=255)
tGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGcc < 3:1428275/149‑1 (MQ=255)
ccATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGaa < 4:28590/73‑1 (MQ=255)
ccATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGaa > 3:28590/1‑73 (MQ=255)
ccATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACAt < 3:1227296/118‑1 (MQ=255)
ccATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACAt > 4:795496/1‑118 (MQ=255)
ccATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACAt > 4:1227296/1‑118 (MQ=255)
ccATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACAt < 3:795496/118‑1 (MQ=255)
|
GCAAAACGGAGCCGCATCCATGATCGAACTCGTGATTGTATCGCGTCTCCTTGAATATCCGGATGCTGCCTTATGGCAGCATCAACAAGAGATGTTTGAGGCGATTGCCGCGTCGAAAAATCTGCCAAAAGAGGATGCCCATGCGC‑TGGGCATTTTCCTGCGCGATTTAACGACGATGGATCCGCTCGATGCCCAGGCGCAGTACAGCGAACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCC > NC_000913/1285120‑1285403
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
