mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 9,907 | A→C | 9.5% | intergenic (+14/+21) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 9,908 | G→T | 9.5% | intergenic (+15/+20) | mog → / ← satP | molybdochelatase incorporating molybdenum into molybdopterin/succinate‑acetate transporter |
| RA | 14,116 | A→G | 6.9% | intergenic (+37/‑52) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 14,119 | G→A | 7.6% | intergenic (+40/‑49) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 14,124 | T→A | 7.2% | intergenic (+45/‑44) | dnaK → / → dnaJ | chaperone Hsp70, with co‑chaperone DnaJ/chaperone Hsp40, DnaK co‑chaperone |
| RA | 17,527 | G→C | 7.0% | S13S (TCG→TCC) | nhaA → | sodium‑proton antiporter |
| RA | 17,528 | G→C | 7.0% | G14R (GGA→CGA) | nhaA → | sodium‑proton antiporter |
| RA | 53,376 | G→A | 11.2% | P14L (CCC→CTC) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 53,379 | T→C | 11.3% | E13G (GAG→GGG) | pdxA ← | 4‑hydroxy‑L‑threonine phosphate dehydrogenase, NAD‑dependent |
| RA | 59,625 | G→A | 7.5% | intergenic (+346/+62) | yabP → / ← rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| RA | 59,626 | A→G | 7.2% | intergenic (+347/+61) | yabP → / ← rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| RA | 59,627 | C→T | 7.2% | intergenic (+348/+60) | yabP → / ← rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| RA | 59,628 | T→C | 7.3% | intergenic (+349/+59) | yabP → / ← rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| RA | 85,337 | G→T | 6.7% | intergenic (+25/‑293) | leuO → / → ilvI | global transcription factor/acetolactate synthase 3 large subunit |
| RA | 85,338 | A→C | 7.0% | intergenic (+26/‑292) | leuO → / → ilvI | global transcription factor/acetolactate synthase 3 large subunit |
| RA | 87,881 | A→G | 11.8% | intergenic (+33/‑147) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,884 | T→A | 10.5% | intergenic (+36/‑144) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 87,887 | C→T | 10.6% | intergenic (+39/‑141) | ilvH → / → cra | acetolactate synthase 3, small subunit, valine‑sensitive/transcriptional repressor‑activator for carbon metabolism |
| RA | 90,573 | T→G | 5.3% | F160L (TTT→TTG) | rsmH → | 16S rRNA m(4)C1402 methyltransferase, SAM‑dependent |
| RA | 90,576 | C→A | 5.3% | A161A (GCC→GCA) | rsmH → | 16S rRNA m(4)C1402 methyltransferase, SAM‑dependent |
| RA | 100,158 | C→T | 5.1% | P172L (CCG→CTG) | murG → | N‑acetylglucosaminyl transferase |
| RA | 100,161 | A→G | 5.2% | Q173R (CAG→CGG) | murG → | N‑acetylglucosaminyl transferase |
| RA | 106,831 | T→A | 5.6% | I92N (ATT→AAT) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| RA | 111,013 | G→A | 22.2% | intergenic (+29/‑31) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 111,016 | T→C | 22.2% | intergenic (+32/‑28) | secA → / → mutT | preprotein translocase subunit, ATPase/dGTP‑preferring nucleoside triphosphate pyrophosphohydrolase |
| RA | 120,154 | Δ1 bp | 17.5% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 16.9% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 125,226 | G→T | 7.4% | R737L (CGT→CTT) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 125,232 | T→G | 5.9% | V739G (GTC→GGC) ‡ | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 125,233 | C→A | 5.9% | V739V (GTC→GTA) ‡ | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 136,530 | C→T | 7.7% | intergenic (‑66/+40) | speE ← / ← yacC | spermidine synthase (putrescine aminopropyltransferase)/PulS_OutS family protein |
| RA | 136,532 | G→C | 7.7% | intergenic (‑68/+38) | speE ← / ← yacC | spermidine synthase (putrescine aminopropyltransferase)/PulS_OutS family protein |
| RA | 136,535 | G→C | 7.5% | intergenic (‑71/+35) | speE ← / ← yacC | spermidine synthase (putrescine aminopropyltransferase)/PulS_OutS family protein |
| RA | 136,537 | A→G | 7.7% | intergenic (‑73/+33) | speE ← / ← yacC | spermidine synthase (putrescine aminopropyltransferase)/PulS_OutS family protein |
| RA | 138,784 | C→T | 8.3% | intergenic (+151/+51) | cueO → / ← gcd | multicopper oxidase (laccase)/glucose dehydrogenase |
| RA | 138,789 | C→G | 8.3% | intergenic (+156/+46) | cueO → / ← gcd | multicopper oxidase (laccase)/glucose dehydrogenase |
| RA | 138,792 | C→G | 8.6% | intergenic (+159/+43) | cueO → / ← gcd | multicopper oxidase (laccase)/glucose dehydrogenase |
| RA | 138,797 | A→G | 8.7% | intergenic (+164/+38) | cueO → / ← gcd | multicopper oxidase (laccase)/glucose dehydrogenase |
| RA | 143,533 | T→C | 6.3% | L252P (CTG→CCG) ‡ | yadG → | putative ABC transporter ATPase |
| RA | 143,534 | G→A | 7.3% | L252L (CTG→CTA) ‡ | yadG → | putative ABC transporter ATPase |
| RA | 151,519 | A→C | 9.7% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 10.0% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 164,098 | T→A | 14.3% | L665Q (CTG→CAG) | hrpB → | putative ATP‑dependent helicase |
| RA | 164,101 | T→A | 14.3% | L666Q (CTG→CAG) | hrpB → | putative ATP‑dependent helicase |
| RA | 164,556 | T→A | 6.1% | intergenic (+22/‑174) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,557 | G→C | 5.0% | intergenic (+23/‑173) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,558 | T→A | 5.0% | intergenic (+24/‑172) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,620 | C→T | 9.5% | intergenic (+86/‑110) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 164,621 | A→G | 9.5% | intergenic (+87/‑109) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| RA | 167,918 | G→C | 6.0% | Q145H (CAG→CAC) | fhuA → | ferrichrome outer membrane transporter |
| RA | 169,748 | T→A | 12.2% | intergenic (+21/‑30) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 169,749 | T→A | 12.2% | intergenic (+22/‑29) | fhuA → / → fhuC | ferrichrome outer membrane transporter/iron(3+)‑hydroxamate import ABC transporter ATPase |
| RA | 172,496 | A→G | 7.0% | Q345Q (CAA→CAG) | fhuB → | iron(3+)‑hydroxamate import ABC transporter permease |
| RA | 172,499 | T→C | 6.9% | H346H (CAT→CAC) | fhuB → | iron(3+)‑hydroxamate import ABC transporter permease |
| RA | 172,500 | G→A | 6.9% | V347M (GTG→ATG) | fhuB → | iron(3+)‑hydroxamate import ABC transporter permease |
| RA | 172,503 | C→T | 6.9% | L348L (CTG→TTG) | fhuB → | iron(3+)‑hydroxamate import ABC transporter permease |
| RA | 173,566 | A→G | 8.1% | intergenic (+122/+36) | fhuB → / ← hemL | iron(3+)‑hydroxamate import ABC transporter permease/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 173,567 | A→C | 8.7% | intergenic (+123/+35) | fhuB → / ← hemL | iron(3+)‑hydroxamate import ABC transporter permease/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 173,573 | T→G | 6.3% | intergenic (+129/+29) | fhuB → / ← hemL | iron(3+)‑hydroxamate import ABC transporter permease/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 173,574 | C→A | 6.4% | intergenic (+130/+28) | fhuB → / ← hemL | iron(3+)‑hydroxamate import ABC transporter permease/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 173,746 | A→T | 7.9% | F379L (TTT→TTA) | hemL ← | glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 181,274 | C→G | 5.8% | H131D (CAC→GAC) ‡ | degP → | serine endoprotease (protease Do), membrane‑associated |
| RA | 181,275 | A→T | 5.6% | H131L (CAC→CTC) ‡ | degP → | serine endoprotease (protease Do), membrane‑associated |
| RA | 181,276 | C→G | 5.6% | H131Q (CAC→CAG) ‡ | degP → | serine endoprotease (protease Do), membrane‑associated |
| RA | 192,573:1 | +G | 5.2% | coding (719/726 nt) | pyrH → | uridylate kinase |
| RA | 192,579 | A→T | 5.8% | *242L (TAA→TTA) | pyrH → | uridylate kinase |
| RA | 201,032 | G→A | 5.3% | G21D (GGC→GAC) | lpxD → | UDP‑3‑O‑(3‑hydroxymyristoyl)‑glucosamine N‑acyltransferase |
| RA | 217,037 | A→T | 6.4% | intergenic (‑34/+20) | yaeF ← / ← proS | putative lipoprotein/prolyl‑tRNA synthetase |
| RA | 219,011 | G→A | 5.2% | P195L (CCG→CTG) | tsaA ← | tRNA‑Thr(GGU) m(6)t(6)A37 methyltransferase, SAM‑dependent |
| RA | 223,854 | T→A | 30.0% | noncoding (84/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 223,855 | T→A | 30.0% | noncoding (85/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 224,963 | G→T | 6.7% | noncoding (1193/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 224,965 | C→G | 6.7% | noncoding (1195/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 224,967 | A→C | 7.0% | noncoding (1197/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 231,959 | G→T | 6.0% | G12C (GGC→TGC) | yafE → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 231,964 | T→A | 6.0% | A13A (GCT→GCA) | yafE → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 231,969 | A→C | 5.8% | Q15P (CAA→CCA) | yafE → | putative S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| RA | 248,868 | C→G | 5.9% | pseudogene (1203/1713 nt) | lfhA ← | pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis |
| RA | 252,589 | G→C | 5.9% | A97P (GCA→CCA) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 252,594 | G→C | 6.5% | W98C (TGG→TGC) | yafO → | mRNA interferase toxin of the YafO‑YafN toxin‑antitoxin system |
| RA | 254,228 | A→T | 11.1% | intergenic (+26/+31) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,233 | A→T | 10.9% | intergenic (+31/+26) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 254,238 | A→T | 10.9% | intergenic (+36/+21) | prfH → / ← pepD | pseudogene, RF‑1 domain family; probable peptide chain release factor/aminoacyl‑histidine dipeptidase (peptidase D) |
| RA | 256,449 | T→C | 8.9% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 7.9% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,459 | G→A | 8.5% | intergenic (+24/‑68) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 266,465 | G→A | 5.0% | A30V (GCC→GTC) | yafY ← | lipoprotein, inner membrane; degP regulator; CP4‑6 prophage |
| RA | 268,921 | G→T | 6.7% | L14I (CTT→ATT) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein |
| RA | 268,924 | A→C | 6.8% | S13A (TCG→GCG) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein |
| RA | 276,935 | C→A | 5.5% | T74K (ACG→AAG) | mmuM → | CP4‑6 prophage; S‑methylmethionine:homocysteine methyltransferase |
| RA | 282,513 | T→C | 12.9% | L79P (CTG→CCG) | yagE → | 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| RA | 282,518 | G→A | 11.1% | G81S (GGC→AGC) | yagE → | 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| RA | 285,197 | A→G | 24.9% | intergenic (+29/‑198) | yagF → / → yagG | CP4‑6 prophage; dehydratase family protein/CP4‑6 prophage; putative sugar transporter |
| RA | 285,199 | T→A | 29.2% | intergenic (+31/‑196) | yagF → / → yagG | CP4‑6 prophage; dehydratase family protein/CP4‑6 prophage; putative sugar transporter |
| RA | 285,202 | T→A | 30.4% | intergenic (+34/‑193) | yagF → / → yagG | CP4‑6 prophage; dehydratase family protein/CP4‑6 prophage; putative sugar transporter |
| RA | 285,204 | C→T | 36.8% | intergenic (+36/‑191) | yagF → / → yagG | CP4‑6 prophage; dehydratase family protein/CP4‑6 prophage; putative sugar transporter |
| RA | 285,882 | T→G | 10.1% | I163S (ATC→AGC) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 285,887 | C→A | 12.5% | L165M (CTG→ATG) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 288,484 | C→G | 10.9% | D227H (GAC→CAC) | yagI ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| RA | 288,486 | T→A | 10.8% | D226V (GAC→GTC) | yagI ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| RA | 288,488 | C→G | 10.4% | V225V (GTG→GTC) | yagI ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| RA | 289,256 | G→C | 7.7% | intergenic (‑94/+45) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 289,257 | T→A | 7.8% | intergenic (‑95/+44) | yagI ← / ← argF | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 292,302 | C→G | 15.1% | intergenic (+71/+20) | yagJ → / ← yagK | CP4‑6 prophage; uncharacterized protein;Phage or Prophage Related/CP4‑6 prophage; conserved protein |
| RA | 294,915 | T→A | 6.8% | intergenic (‑116/+224) | yagM ← / ← yagN | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 294,916 | T→A | 6.8% | intergenic (‑117/+223) | yagM ← / ← yagN | CP4‑6 prophage; uncharacterized protein/CP4‑6 prophage; uncharacterized protein |
| RA | 300,681 | Δ1 bp | 5.8% | coding (254/2199 nt) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 300,689 | G→T | 9.2% | T82T (ACC→ACA) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 300,692 | A→C | 10.0% | I81M (ATT→ATG) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 300,695 | G→T | 10.2% | V80V (GTC→GTA) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 300,698 | A→C | 7.4% | A79A (GCT→GCG) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 301,538 | G→A | 9.2% | T117M (ACG→ATG) ‡ | paoB ← | PaoABC aldehyde oxidoreductase, FAD‑containing subunit |
| RA | 301,539 | T→C | 9.1% | T117A (ACG→GCG) ‡ | paoB ← | PaoABC aldehyde oxidoreductase, FAD‑containing subunit |
| RA | 314,255 | T→C | 13.0% | intergenic (‑450/‑102) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 314,258 | G→A | 13.1% | intergenic (‑453/‑99) | ykgP ← / → eaeH | pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified |
| RA | 317,566 | G→A | 7.3% | pseudogene (128/129 nt) | ykgQ → | pseudogene, putative dehydrogenase |
| RA | 317,571 | T→C | 7.2% | intergenic (+4/+155) | ykgQ → / ← rclC | pseudogene, putative dehydrogenase/reactive chlorine species (RCS) stress resistance inner membrane protein |
| RA | 324,874 | T→G | 6.2% | N164T (AAC→ACC) ‡ | ykgH ← | putative inner membrane protein |
| RA | 324,875 | T→A | 6.2% | N164Y (AAC→TAC) ‡ | ykgH ← | putative inner membrane protein |
| RA | 324,876 | C→A | 6.2% | R163S (AGG→AGT) | ykgH ← | putative inner membrane protein |
| RA | 339,756 | T→C | 8.2% | intergenic (+13/‑409) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 339,761 | G→C | 8.5% | intergenic (+18/‑404) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 340,044 | C→A | 7.0% | intergenic (+301/‑121) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 344,704 | A→T | 6.4% | K177* (AAA→TAA) ‡ | yahL → | uncharacterized protein |
| RA | 344,705 | A→T | 6.4% | K177I (AAA→ATA) ‡ | yahL → | uncharacterized protein |
| RA | 368,461 | T→A | 5.6% | intergenic (‑41/‑150) | mhpR ← / → mhpA | mhp operon transcriptional activator/3‑(3‑hydroxyphenyl)propionate hydroxylase |
| RA | 374,682 | C→T | 5.2% | P272L (CCG→CTG) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,683 | G→C | 5.1% | P272P (CCG→CCC) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,688 | G→C | 5.1% | R274P (CGA→CCA) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,689 | A→G | 5.4% | R274R (CGA→CGG) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 378,398 | A→G | 5.5% | intergenic (‑30/+64) | frmB ← / ← frmA | S‑formylglutathione hydrolase/alcohol dehydrogenase class III; glutathione‑dependent formaldehyde dehydrogenase |
| RA | 378,400 | G→A | 5.5% | intergenic (‑32/+62) | frmB ← / ← frmA | S‑formylglutathione hydrolase/alcohol dehydrogenase class III; glutathione‑dependent formaldehyde dehydrogenase |
| RA | 378,405 | C→T | 5.3% | intergenic (‑37/+57) | frmB ← / ← frmA | S‑formylglutathione hydrolase/alcohol dehydrogenase class III; glutathione‑dependent formaldehyde dehydrogenase |
| RA | 383,897 | C→T | 5.8% | M13I (ATG→ATA) ‡ | yaiP ← | putative family 2 glycosyltransferase |
| RA | 383,898 | A→G | 5.8% | M13T (ATG→ACG) ‡ | yaiP ← | putative family 2 glycosyltransferase |
| RA | 385,724 | T→A | 6.0% | W165R (TGG→AGG) | tauA → | taurine ABC transporter periplasmic binding protein |
| RA | 397,273 | C→T | 5.9% | A212V (GCC→GTC) | sbmA → | peptide antibiotic transporter |
| RA | 397,277 | C→G | 5.5% | I213M (ATC→ATG) | sbmA → | peptide antibiotic transporter |
| RA | 397,281 | A→G | 6.0% | T215A (ACG→GCG) | sbmA → | peptide antibiotic transporter |
| RA | 399,801 | A→G | 5.3% | Q70R (CAA→CGA) | yaiZ → | DUF2754 family putative inner membrane protein |
| RA | 403,178 | T→C | 5.9% | intergenic (+16/‑103) | phoA → / → psiF | bacterial alkaline phosphatase/PsiF family protein |
| RA | 420,941 | T→A | 28.6% | intergenic (+31/‑45) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,942 | G→T | 26.6% | intergenic (+32/‑44) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,945 | A→C | 27.6% | intergenic (+35/‑41) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,946 | T→A | 29.6% | intergenic (+36/‑40) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 422,537 | T→G | 6.1% | L7R (CTG→CGG) | malZ → | maltodextrin glucosidase |
| RA | 422,540 | C→A | 6.1% | P8Q (CCG→CAG) | malZ → | maltodextrin glucosidase |
| RA | 423,989 | A→C | 5.8% | N491T (AAC→ACC) ‡ | malZ → | maltodextrin glucosidase |
| RA | 423,990 | C→G | 5.6% | N491K (AAC→AAG) ‡ | malZ → | maltodextrin glucosidase |
| RA | 423,995 | C→G | 5.4% | P493R (CCG→CGG) ‡ | malZ → | maltodextrin glucosidase |
| RA | 423,996 | G→T | 5.4% | P493P (CCG→CCT) ‡ | malZ → | maltodextrin glucosidase |
| RA | 435,396 | T→A | 5.3% | I87N (ATT→AAT) | nusB → | transcription antitermination protein |
| RA | 435,402 | T→A | 5.6% | L89Q (CTG→CAG) | nusB → | transcription antitermination protein |
| RA | 436,702 | G→A | 6.0% | G38G (GGG→GGA) | pgpA → | phosphatidylglycerophosphatase A |
| RA | 443,022 | G→A | 15.4% | intergenic (+25/+29) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 443,023 | T→C | 15.0% | intergenic (+26/+28) | thiI → / ← yajL | tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone |
| RA | 446,786 | C→T | 13.6% | intergenic (‑120/+29) | yajR ← / ← cyoE | putative transporter/protoheme IX farnesyltransferase |
| RA | 446,787 | G→A | 12.7% | intergenic (‑121/+28) | yajR ← / ← cyoE | putative transporter/protoheme IX farnesyltransferase |
| RA | 446,788 | T→C | 13.0% | intergenic (‑122/+27) | yajR ← / ← cyoE | putative transporter/protoheme IX farnesyltransferase |
| RA | 446,789 | A→G | 12.4% | intergenic (‑123/+26) | yajR ← / ← cyoE | putative transporter/protoheme IX farnesyltransferase |
| RA | 457,649 | A→C | 10.0% | D75A (GAC→GCC) | clpX → | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
| RA | 457,654 | T→A | 10.7% | Y77N (TAC→AAC) | clpX → | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
| RA | 457,659 | T→A | 9.6% | V78V (GTT→GTA) | clpX → | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
| RA | 457,664 | G→T | 10.5% | G80V (GGC→GTC) | clpX → | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
| RA | 475,971 | C→G | 24.0% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 23.8% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 489,958 | T→C | 8.8% | intergenic (+60/+152) | mscK → / ← ybaM | mechanosensitive channel protein, intermediate conductance, K+ regulated/DUF2496 family protein |
| RA | 489,963 | G→C | 9.1% | intergenic (+65/+147) | mscK → / ← ybaM | mechanosensitive channel protein, intermediate conductance, K+ regulated/DUF2496 family protein |
| RA | 489,966 | G→C | 9.7% | intergenic (+68/+144) | mscK → / ← ybaM | mechanosensitive channel protein, intermediate conductance, K+ regulated/DUF2496 family protein |
| RA | 489,971 | G→A | 9.7% | intergenic (+73/+139) | mscK → / ← ybaM | mechanosensitive channel protein, intermediate conductance, K+ regulated/DUF2496 family protein |
| RA | 507,268 | G→T | 6.2% | noncoding (65/84 nt) | chiX → | sRNA antisense regulator of OM chitoporin ChiP(YbfM), Hfq‑dependent |
| RA | 507,271 | A→C | 6.0% | noncoding (68/84 nt) | chiX → | sRNA antisense regulator of OM chitoporin ChiP(YbfM), Hfq‑dependent |
| RA | 508,593 | A→G | 10.0% | intergenic (+34/+282) | ybaQ → / ← copA | putative DNA‑binding transcriptional regulator/copper transporter |
| RA | 508,594 | A→C | 11.5% | intergenic (+35/+281) | ybaQ → / ← copA | putative DNA‑binding transcriptional regulator/copper transporter |
| RA | 508,600 | T→G | 7.8% | intergenic (+41/+275) | ybaQ → / ← copA | putative DNA‑binding transcriptional regulator/copper transporter |
| RA | 508,601 | C→A | 9.4% | intergenic (+42/+274) | ybaQ → / ← copA | putative DNA‑binding transcriptional regulator/copper transporter |
| RA | 512,212 | T→G | 5.3% | V191G (GTG→GGG) | glsA → | glutaminase 1 |
| RA | 512,219 | C→A | 5.3% | T193T (ACC→ACA) | glsA → | glutaminase 1 |
| RA | 518,860 | A→G | 11.3% | F97S (TTC→TCC) | ybbO ← | putative oxidoreductase |
| RA | 518,863 | C→T | 10.7% | G96E (GGA→GAA) | ybbO ← | putative oxidoreductase |
| RA | 525,740 | A→T | 5.3% | E827V (GAG→GTG) | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 533,846 | T→C | 11.0% | intergenic (+20/‑70) | allR → / → gcl | glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase |
| RA | 533,849 | G→A | 11.2% | intergenic (+23/‑67) | allR → / → gcl | glyoxylate‑inducible transcriptional repressor of all and gcl operons/glyoxylate carboligase |
| RA | 543,091 | G→C | 26.8% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 26.8% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,207 | A→T | 12.1% | intergenic (+174/+54) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,210 | A→T | 12.5% | intergenic (+177/+51) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 553,885 | G→A | 9.3% | T19I (ACC→ATC) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,887 | G→C | 9.0% | I18M (ATC→ATG) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,889 | T→C | 9.0% | I18V (ATC→GTC) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 569,160 | G→T | 7.2% | D87Y (GAC→TAC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 569,161 | A→C | 7.2% | D87A (GAC→GCC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 579,341 | T→C | 5.1% | E85G (GAA→GGA) | ybcV ← | DLP12 prophage; uncharacterized protein |
| RA | 594,946 | C→A | 7.1% | Q166H (CAG→CAT) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,948 | G→C | 6.6% | Q166E (CAG→GAG) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,950 | T→G | 6.6% | H165P (CAT→CCT) | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 595,519 | T→A | 15.5% | intergenic (‑76/‑81) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 595,520 | T→A | 15.4% | intergenic (‑77/‑80) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 603,391 | C→G | 29.0% | intergenic (+56/+25) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,393 | T→A | 30.5% | intergenic (+58/+23) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 603,395 | C→G | 29.5% | intergenic (+60/+21) | pheP → / ← ybdG | phenylalanine transporter/mechanosensitive channel protein, miniconductance |
| RA | 618,627 | C→A | 5.1% | P125H (CCT→CAT) | fepE → | regulator of length of O‑antigen component of lipopolysaccharide chains |
| RA | 618,629 | T→A | 5.1% | Y126N (TAT→AAT) ‡ | fepE → | regulator of length of O‑antigen component of lipopolysaccharide chains |
| RA | 618,631 | T→G | 5.4% | Y126* (TAT→TAG) ‡ | fepE → | regulator of length of O‑antigen component of lipopolysaccharide chains |
| RA | 619,410 | T→C | 9.7% | T264A (ACG→GCG) | fepC ← | ferrienterobactin ABC transporter ATPase |
| RA | 619,414 | T→G | 9.5% | G262G (GGA→GGC) ‡ | fepC ← | ferrienterobactin ABC transporter ATPase |
| RA | 619,415 | C→A | 9.6% | G262V (GGA→GTA) ‡ | fepC ← | ferrienterobactin ABC transporter ATPase |
| RA | 619,419 | G→A | 9.4% | L261F (CTC→TTC) | fepC ← | ferrienterobactin ABC transporter ATPase |
| RA | 622,455 | G→C | 6.2% | W52C (TGG→TGC) | entS → | enterobactin exporter, iron‑regulated |
| RA | 644,030 | A→G | 10.7% | intergenic (‑63/+167) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,034 | T→C | 10.3% | intergenic (‑67/+163) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,036 | A→T | 10.2% | intergenic (‑69/+161) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,038 | G→A | 10.2% | intergenic (‑71/+159) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 644,042 | C→T | 10.2% | intergenic (‑75/+155) | rnk ← / ← rna | regulator of nucleoside diphosphate kinase/ribonuclease I |
| RA | 645,062 | G→A | 11.8% | intergenic (‑59/+55) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 645,065 | A→T | 11.1% | intergenic (‑62/+52) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 645,068 | T→C | 15.5% | intergenic (‑65/+49) | rna ← / ← citT | ribonuclease I/citrate/succinate antiporter; citrate carrier |
| RA | 654,560 | A→C | 9.6% | intergenic (+18/+23) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 654,563 | C→G | 9.5% | intergenic (+21/+20) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 654,566 | G→T | 7.6% | intergenic (+24/+17) | citB → / ← dcuC | response regulator in two‑component regulatory system with CitA/anaerobic C4‑dicarboxylate transport |
| RA | 657,531 | T→G | 16.9% | intergenic (+30/+24) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,533 | A→T | 16.1% | intergenic (+32/+22) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 657,535 | C→A | 17.2% | intergenic (+34/+20) | cspE → / ← flc | constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein/fluoride efflux channel, dual topology membrane protein |
| RA | 665,094 | G→C | 5.2% | P33A (CCT→GCT) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
| RA | 672,110 | G→A | 7.6% | T26I (ACC→ATC) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 672,113 | T→C | 7.7% | D25G (GAT→GGT) | lptE ← | LPS assembly OM complex LptDE, lipoprotein component |
| RA | 680,038 | C→A | 5.1% | C177* (TGC→TGA) | ybeU → | DUF1266 family protein |
| RA | 691,390 | G→C | 5.9% | A132G (GCC→GGC) | ybeX ← | putative ion transport |
| RA | 699,556 | C→T | 19.8% | intergenic (‑379/+18) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 699,559 | A→G | 19.2% | intergenic (‑382/+15) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 705,916 | T→C | 20.7% | intergenic (+26/‑177) | nagE → / → glnS | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase |
| RA | 705,917 | G→A | 19.3% | intergenic (+27/‑176) | nagE → / → glnS | N‑acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components/glutamyl‑tRNA synthetase |
| RA | 710,170 | C→T | 12.5% | intergenic (+54/+30) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 710,173 | A→G | 10.2% | intergenic (+57/+27) | chiQ → / ← fur | chitosugar‑induced verified lipoprotein/ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 739,616 | C→A | 6.5% | A37D (GCT→GAT) | phr → | deoxyribodipyrimidine photolyase, FAD‑binding |
| RA | 745,361 | T→C | 7.3% | F66S (TTT→TCT) ‡ | ybgL → | UPF0271 family protein |
| RA | 745,362 | T→G | 7.3% | F66L (TTT→TTG) ‡ | ybgL → | UPF0271 family protein |
| RA | 745,366 | Δ1 bp | 7.2% | coding (202/735 nt) | ybgL → | UPF0271 family protein |
| RA | 745,368 | Δ1 bp | 6.9% | coding (204/735 nt) | ybgL → | UPF0271 family protein |
| RA | 756,565 | G→T | 6.9% | G220V (GGC→GTC) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 756,568 | A→C | 6.9% | D221A (GAC→GCC) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 770,679 | G→T | 23.1% | intergenic (+68/‑779) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,682 | A→C | 23.0% | intergenic (+71/‑776) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,805 | G→A | 8.6% | intergenic (+194/‑653) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 770,810 | T→C | 9.7% | intergenic (+199/‑648) | mngB → / → cydA | alpha‑mannosidase/cytochrome d terminal oxidase, subunit I |
| RA | 781,326 | A→T | 5.4% | intergenic (+104/‑43) | lysY → / → lysZ | tRNA‑Lys/tRNA‑Lys |
| RA | 781,824 | C→T | 40.0% | intergenic (+172/‑261) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,826 | A→T | 30.7% | intergenic (+174/‑259) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,828 | A→G | 30.8% | intergenic (+176/‑257) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 784,012 | T→A | 7.9% | Q271L (CAG→CTG) | zitB ← | zinc efflux system |
| RA | 788,385 | G→T | 6.8% | T151T (ACC→ACA) ‡ | galM ← | aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase |
| RA | 788,387 | T→A | 6.2% | T151S (ACC→TCC) ‡ | galM ← | aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase |
| RA | 788,389 | A→C | 5.6% | L150R (CTG→CGG) | galM ← | aldose 1‑epimerase; type‑1 mutarotase; galactose mutarotase |
| RA | 794,938 | C→A | 6.8% | intergenic (+16/‑151) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,939 | T→C | 6.8% | intergenic (+17/‑150) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,942 | G→A | 6.8% | intergenic (+20/‑147) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 794,943 | T→G | 6.9% | intergenic (+21/‑146) | acrZ → / → modA | AcrAB‑TolC efflux pump accessory protein, membrane‑associated/molybdate ABC transporter periplasmic binding protein; chlorate resistance protein |
| RA | 808,000:1 | +A | 5.3% | coding (1258/1290 nt) | bioA ← | 7,8‑diaminopelargonic acid synthase, PLP‑dependent |
| RA | 843,338 | C→G | 9.1% | A715P (GCG→CCG) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 843,342 | A→T | 8.8% | V713V (GTT→GTA) ‡ | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 843,343 | A→T | 8.9% | V713D (GTT→GAT) ‡ | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 843,347 | C→G | 6.5% | G712R (GGC→CGC) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 847,213 | A→T | 5.8% | intergenic (‑94/+45) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,214 | T→A | 5.8% | intergenic (‑95/+44) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,215 | A→T | 5.8% | intergenic (‑96/+43) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 850,993 | T→C | 14.3% | intergenic (+28/+21) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,995 | T→G | 14.3% | intergenic (+30/+19) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,996 | C→A | 14.3% | intergenic (+31/+18) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 850,998 | G→A | 16.7% | intergenic (+33/+16) | ompX → / ← opgE | outer membrane protein X/OPG biosynthetic transmembrane phosphoethanolamine transferase |
| RA | 854,793 | T→A | 5.1% | intergenic (+28/+31) | ybiR → / ← ldtB | putative transporter/L,D‑transpeptidase linking Lpp to murein |
| RA | 854,794 | G→T | 5.0% | intergenic (+29/+30) | ybiR → / ← ldtB | putative transporter/L,D‑transpeptidase linking Lpp to murein |
| RA | 854,796 | G→A | 5.1% | intergenic (+31/+28) | ybiR → / ← ldtB | putative transporter/L,D‑transpeptidase linking Lpp to murein |
| RA | 857,576 | T→C | 21.4% | intergenic (+21/+220) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,578 | C→G | 22.5% | intergenic (+23/+218) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 857,580 | G→A | 22.5% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC‑F family putative regulatory ATPase/DUF1479 family protein |
| RA | 858,924 | T→G | 6.9% | R46R (CGA→CGC) | ybiU ← | DUF1479 family protein |
| RA | 858,927 | C→A | 6.9% | T45T (ACG→ACT) | ybiU ← | DUF1479 family protein |
| RA | 867,717 | G→C | 6.2% | L66F (TTG→TTC) | gsiA → | glutathione ABC transporter ATPase |
| RA | 867,718 | G→C | 6.1% | E67Q (GAA→CAA) | gsiA → | glutathione ABC transporter ATPase |
| RA | 869,906 | A→G | 5.9% | I166V (ATT→GTT) | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 876,568 | A→T | 5.5% | N412Y (AAT→TAT) ‡ | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 876,569 | A→T | 5.5% | N412I (AAT→ATT) ‡ | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 876,577 | C→G | 5.6% | P415A (CCT→GCT) | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 884,868 | T→A | 5.0% | L399* (TTA→TAA) | mdfA → | multidrug efflux system protein |
| RA | 887,392 | T→A | 9.7% | intergenic (‑53/‑31) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 887,393 | T→A | 9.7% | intergenic (‑54/‑30) | ybjJ ← / → rcdA | putative drug efflux MFS transporter, inner membrane protein/transcriptional regulator of csgD and ybiJI; autoregulator |
| RA | 892,455 | G→C | 14.9% | V163V (GTG→GTC) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,457 | T→A | 16.4% | I164N (ATT→AAT) | rimK → | ribosomal protein S6 modification protein |
| RA | 892,459 | G→C | 16.2% | D165H (GAC→CAC) | rimK → | ribosomal protein S6 modification protein |
| RA | 894,952 | T→A | 7.5% | intergenic (+56/‑39) | potF → / → potG | putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATPase |
| RA | 897,968:1 | +A | 19.4% | intergenic (+39/‑21) | potI → / → ybjO | putrescine ABC transporter permease/DUF2593 family inner membrane protein |
| RA | 897,973 | Δ1 bp | 17.6% | intergenic (+44/‑16) | potI → / → ybjO | putrescine ABC transporter permease/DUF2593 family inner membrane protein |
| RA | 912,583 | T→A | 6.9% | E411V (GAG→GTG) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases |
| RA | 912,587 | C→G | 6.9% | G410R (GGC→CGC) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases |
| RA | 912,591 | T→A | 7.1% | A408A (GCA→GCT) | hcp ← | hybrid‑cluster [4Fe‑2S‑2O] subunit of anaerobic terminal reductases |
| RA | 915,080 | G→C | 11.1% | intergenic (‑223/+272) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 915,081 | G→C | 11.1% | intergenic (‑224/+271) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 926,168 | C→T | 10.5% | intergenic (‑197/+57) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 926,174 | A→T | 11.5% | intergenic (‑203/+51) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 926,180 | A→G | 11.5% | intergenic (‑209/+45) | serW ← / ← infA | tRNA‑Ser/translation initiation factor IF‑1 |
| RA | 928,447 | A→G | 5.1% | I250T (ATA→ACA) | cydC ← | glutathione/cysteine ABC transporter export permease/ATPase |
| RA | 951,495 | G→A | 7.1% | A687V (GCT→GTT) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 951,498 | A→T | 7.1% | L686Q (CTG→CAG) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 951,501 | T→C | 7.1% | N685S (AAC→AGC) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 964,148 | T→C | 11.8% | intergenic (+36/‑172) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,150 | T→A | 11.5% | intergenic (+38/‑170) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,152 | G→A | 11.8% | intergenic (+40/‑168) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 994,627 | G→T | 7.7% | A69E (GCG→GAG) | ssuC ← | aliphatic sulfonate ABC transporter permease |
| RA | 994,630 | C→T | 7.7% | R68Q (CGG→CAG) | ssuC ← | aliphatic sulfonate ABC transporter permease |
| RA | 994,632 | C→G | 7.7% | W67C (TGG→TGC) ‡ | ssuC ← | aliphatic sulfonate ABC transporter permease |
| RA | 994,634 | A→G | 7.3% | W67R (TGG→CGG) ‡ | ssuC ← | aliphatic sulfonate ABC transporter permease |
| RA | 994,637 | A→C | 7.1% | S66A (TCC→GCC) | ssuC ← | aliphatic sulfonate ABC transporter permease |
| RA | 1,015,912 | T→A | 32.7% | intergenic (+30/+40) | rmf → / ← fabA | ribosome modulation factor/beta‑hydroxydecanoyl thioester dehydrase |
| RA | 1,018,983 | A→T | 18.2% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 18.1% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,041,937 | T→G | 9.9% | intergenic (+22/+93) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,041,940 | C→A | 9.7% | intergenic (+25/+90) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,052,257 | C→T | 10.6% | intergenic (+17/+32) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,260 | T→C | 9.2% | intergenic (+20/+29) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,261 | G→A | 9.2% | intergenic (+21/+28) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,052,264 | A→G | 9.1% | intergenic (+24/+25) | gnsA → / ← yccM | putative phosphatidylethanolamine synthesis regulator/putative 4Fe‑4S membrane protein |
| RA | 1,064,160 | T→C | 5.5% | L42P (CTG→CCG) ‡ | yccE → | uncharacterized protein |
| RA | 1,064,161 | G→A | 5.5% | L42L (CTG→CTA) ‡ | yccE → | uncharacterized protein |
| RA | 1,072,360 | T→A | 5.3% | E168D (GAA→GAT) | rutB ← | ureidoacrylate amidohydrolase |
| RA | 1,074,894 | G→T | 13.0% | intergenic (+14/+26) | rutR → / ← putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,074,898 | G→A | 8.7% | intergenic (+18/+22) | rutR → / ← putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,074,899 | T→C | 8.7% | intergenic (+19/+21) | rutR → / ← putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,074,903 | A→C | 9.8% | intergenic (+23/+17) | rutR → / ← putA | rut operon transcriptional repressor for/fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,074,945 | T→G | 6.0% | N1313T (AAC→ACC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,074,948 | C→A | 6.3% | G1312V (GGT→GTT) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,075,515 | G→T | 9.6% | A1123E (GCG→GAG) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,075,518 | A→C | 9.6% | L1122R (CTC→CGC) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,082,499 | T→A | 7.3% | F86Y (TTT→TAT) ‡ | efeO → | inactive ferrous ion transporter EfeUOB |
| RA | 1,082,500 | T→A | 7.2% | F86L (TTT→TTA) ‡ | efeO → | inactive ferrous ion transporter EfeUOB |
| RA | 1,086,966 | A→C | 6.7% | L294R (CTG→CGG) ‡ | pgaC ← | biofilm PGA synthase PgaCD, catalytic subunit; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase |
| RA | 1,086,967 | G→T | 6.6% | L294M (CTG→ATG) ‡ | pgaC ← | biofilm PGA synthase PgaCD, catalytic subunit; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase |
| RA | 1,100,789 | G→T | 15.5% | intergenic (+2/+62) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,791 | G→C | 15.4% | intergenic (+4/+60) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,100,793 | A→C | 14.6% | intergenic (+6/+58) | ycdZ → / ← csgG | DUF1097 family inner membrane protein/curli production assembly/transport outer membrane lipoprotein |
| RA | 1,134,661 | A→G | 6.8% | intergenic (+104/‑68) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,134,662 | A→C | 6.8% | intergenic (+105/‑67) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,134,668 | T→A | 6.8% | intergenic (+111/‑61) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,134,669 | T→A | 6.8% | intergenic (+112/‑60) | flgF → / → flgG | flagellar component of cell‑proximal portion of basal‑body rod/flagellar component of cell‑distal portion of basal‑body rod |
| RA | 1,146,736 | A→G | 9.7% | noncoding (148/169 nt) | psrD → | novel Novel sRNA, function unknown |
| RA | 1,146,739 | A→T | 9.2% | noncoding (151/169 nt) | psrD → | novel Novel sRNA, function unknown |
| RA | 1,146,740 | C→G | 9.2% | noncoding (152/169 nt) | psrD → | novel Novel sRNA, function unknown |
| RA | 1,146,741 | A→T | 9.2% | noncoding (153/169 nt) | psrD → | novel Novel sRNA, function unknown |
| RA | 1,146,744 | C→T | 9.2% | noncoding (156/169 nt) | psrD → | novel Novel sRNA, function unknown |
| RA | 1,147,548 | T→G | 6.1% | intergenic (+8/‑73) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,549 | C→A | 6.2% | intergenic (+9/‑72) | rpmF → / → plsX | 50S ribosomal subunit protein L32/putative phosphate acyltransferase |
| RA | 1,147,980 | G→T | 10.0% | K120N (AAG→AAT) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,986 | G→C | 8.4% | L122L (CTG→CTC) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,987 | G→C | 8.5% | E123Q (GAG→CAG) | plsX → | putative phosphate acyltransferase |
| RA | 1,147,993 | A→C | 8.5% | I125L (ATT→CTT) | plsX → | putative phosphate acyltransferase |
| RA | 1,153,208 | T→C | 9.9% | intergenic (+28/‑92) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,213 | T→A | 8.0% | intergenic (+33/‑87) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,214 | T→A | 8.0% | intergenic (+34/‑86) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,153,219 | G→A | 8.0% | intergenic (+39/‑81) | fabF → / → pabC | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase II/4‑amino‑4‑deoxychorismate lyase component of para‑aminobenzoate synthase multienzyme complex |
| RA | 1,159,335 | G→T | 13.3% | intergenic (+33/+27) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,159,336 | A→C | 11.9% | intergenic (+34/+26) | ptsG → / ← fhuE | fused glucose‑specific PTS enzymes: IIB component/IIC component/ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,169,380 | T→C | 38.9% | intergenic (+50/+32) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,382 | C→G | 35.0% | intergenic (+52/+30) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,169,384 | G→A | 30.4% | intergenic (+54/+28) | bhsA → / ← ldtC | biofilm, cell surface and signaling protein/L,D‑transpeptidase linking Lpp to murein |
| RA | 1,174,077 | G→A | 8.9% | intergenic (‑113/+15) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,174,080 | T→C | 8.6% | intergenic (‑116/+12) | mfd ← / ← ycfT | transcription‑repair coupling factor/inner membrane protein |
| RA | 1,187,090 | G→C | 25.7% | intergenic (+20/+29) | pepT → / ← roxA | peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| RA | 1,187,091 | T→A | 25.7% | intergenic (+21/+28) | pepT → / ← roxA | peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| RA | 1,187,092 | G→C | 25.7% | intergenic (+22/+27) | pepT → / ← roxA | peptidase T/50S ribosomal protein L16 arginine hydroxylase; 2‑oxoglutarate oxygenase |
| RA | 1,196,408 | A→T | 23.5% | intergenic (+35/+459) | icd → / ← ymfD | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase/e14 prophage; putative SAM‑dependent methyltransferase |
| RA | 1,212,482 | G→T | 7.4% | intergenic (‑479/+221) | iraM ← / ← ycgX | RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein |
| RA | 1,224,239 | A→T | 10.4% | intergenic (+332/+40) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,224,242 | A→T | 10.6% | intergenic (+335/+37) | ycgI → / ← minE | pseudogene/cell division topological specificity factor |
| RA | 1,226,832 | T→G | 6.1% | F78C (TTT→TGT) | ycgJ → | uncharacterized protein |
| RA | 1,231,963 | T→A | 6.3% | Y260N (TAT→AAT) | umuC → | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity |
| RA | 1,231,970 | Δ1 bp | 5.6% | coding (785/1269 nt) | umuC → | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity |
| RA | 1,235,686 | A→G | 6.6% | intergenic (+29/+23) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,235,687 | A→T | 5.4% | intergenic (+30/+22) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,235,688 | A→T | 6.5% | intergenic (+31/+21) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,235,689 | C→T | 6.6% | intergenic (+32/+20) | fadR → / ← ycgB | fatty acid metabolism regulon transcriptional regulator/SpoVR family stationary phase protein |
| RA | 1,260,901 | C→T | 11.6% | intergenic (‑98/+27) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,260,904 | A→G | 11.2% | intergenic (‑101/+24) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,285,105 | C→G | 5.4% | A501G (GCC→GGC) | narH → | nitrate reductase 1, beta (Fe‑S) subunit |
| RA | 1,285,261 | Δ1 bp | 6.4% | coding (123/711 nt) | narJ → | molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1 |
| RA | 1,285,265:1 | +A | 6.6% | coding (127/711 nt) | narJ → | molybdenum‑cofactor‑assembly chaperone delta subunit of nitrate reductase 1 |
| JC JC | 1,293,006 | IS1 (+) Δ9 bp | 87.2% | intergenic (‑84/‑513) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,302,827 | G→A | 6.1% | intergenic (+14/‑72) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,302,834 | G→C | 5.3% | intergenic (+21/‑65) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,302,835 | T→A | 5.3% | intergenic (+22/‑64) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,302,836 | G→C | 5.3% | intergenic (+23/‑63) | oppA → / → oppB | oligopeptide ABC transporter periplasmic binding protein/oligopeptide ABC transporter permease |
| RA | 1,304,469 | C→G | 5.8% | R212R (CGC→CGG) | oppC → | oligopeptide ABC transporter permease |
| RA | 1,304,474 | T→A | 5.8% | I214N (ATT→AAT) | oppC → | oligopeptide ABC transporter permease |
| RA | 1,304,479 | C→G | 6.1% | P216A (CCG→GCG) | oppC → | oligopeptide ABC transporter permease |
| RA | 1,318,469 | T→C | 9.1% | A440A (GCA→GCG) ‡ | trpC ← | indole‑3‑glycerolphosphate synthetase and N‑(5‑phosphoribosyl)anthranilate isomerase |
| RA | 1,318,470 | G→A | 9.1% | A440V (GCA→GTA) ‡ | trpC ← | indole‑3‑glycerolphosphate synthetase and N‑(5‑phosphoribosyl)anthranilate isomerase |
| RA | 1,322,394 | C→G | 8.0% | D185H (GAC→CAC) | trpE ← | component I of anthranilate synthase |
| RA | 1,322,396 | A→T | 8.0% | I184N (ATT→AAT) | trpE ← | component I of anthranilate synthase |
| RA | 1,322,398 | C→G | 7.1% | V183V (GTG→GTC) | trpE ← | component I of anthranilate synthase |
| RA | 1,324,837 | A→C | 21.5% | Y31S (TAT→TCT) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,838 | T→A | 20.9% | Y31* (TAT→TAA) ‡ | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,324,839 | G→T | 23.9% | E32* (GAA→TAA) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,335,681 | T→C | 6.7% | intergenic (+223/‑150) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,335,684 | G→A | 7.0% | intergenic (+226/‑147) | yciX → / → acnA | uncharacterized protein/aconitate hydratase 1; aconitase A |
| RA | 1,344,033 | A→G | 15.1% | L105P (CTG→CCG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,036 | G→C | 15.1% | T104S (ACT→AGT) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,344,039 | C→T | 12.6% | R103Q (CGG→CAG) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,376,944 | T→C | 6.1% | V38A (GTG→GCG) | ycjS → | putative NADH‑binding oxidoreductase |
| RA | 1,376,952 | T→A | 9.3% | C41S (TGT→AGT) ‡ | ycjS → | putative NADH‑binding oxidoreductase |
| RA | 1,376,953 | G→C | 9.3% | C41S (TGT→TCT) ‡ | ycjS → | putative NADH‑binding oxidoreductase |
| RA | 1,376,954 | T→A | 9.2% | C41* (TGT→TGA) ‡ | ycjS → | putative NADH‑binding oxidoreductase |
| RA | 1,381,915 | G→T | 6.2% | intergenic (+13/‑32) | ycjV → / → ompG | pseudogene; putative ATP‑binding component of a transport system/outer membrane porin G |
| RA | 1,381,918 | A→C | 6.1% | intergenic (+16/‑29) | ycjV → / → ompG | pseudogene; putative ATP‑binding component of a transport system/outer membrane porin G |
| RA | 1,382,000 | C→T | 8.5% | C18C (TGC→TGT) | ompG → | outer membrane porin G |
| RA | 1,382,003 | A→G | 8.5% | A19A (GCA→GCG) | ompG → | outer membrane porin G |
| RA | 1,388,283 | C→T | 32.6% | intergenic (+22/+22) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,284 | A→T | 31.2% | intergenic (+23/+21) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,388,285 | A→G | 31.2% | intergenic (+24/+20) | tyrR → / ← tpx | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase/lipid hydroperoxide peroxidase |
| RA | 1,410,986 | A→G | 9.8% | intergenic (+102/+27) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,990 | T→A | 9.6% | intergenic (+106/+23) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,991 | T→A | 9.6% | intergenic (+107/+22) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,410,995 | C→T | 9.1% | intergenic (+111/+18) | dbpA → / ← ttcA | ATP‑dependent RNA helicase, specific for 23S rRNA/tRNA s(2)C32 thioltransferase, iron sulfur cluster protein |
| RA | 1,413,964 | C→T | 9.7% | intergenic (‑37/+20) | ralR ← / ← recT | Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein |
| RA | 1,413,966 | T→A | 9.1% | intergenic (‑39/+18) | ralR ← / ← recT | Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein |
| RA | 1,413,968 | A→G | 9.1% | intergenic (‑41/+16) | ralR ← / ← recT | Rac prophage; restriction alleviation protein/Rac prophage; recombination and repair protein |
| RA | 1,419,624 | G→A | 100% | intergenic (‑168/+141) | ydaG ← / ← racR | Rac prophage; uncharacterized protein/Rac prophage; putative DNA‑binding transcriptional regulator |
| RA | 1,426,178 | A→T | 13.7% | intergenic (+96/‑276) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,417 | T→C | 8.1% | intergenic (+335/‑37) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,418 | T→G | 8.2% | intergenic (+336/‑36) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,421 | C→A | 8.4% | intergenic (+339/‑33) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,426,422 | G→A | 9.2% | intergenic (+340/‑32) | ydaY → / → tmpR | pseudogene, Rac prophage;Phage or Prophage Related/Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein |
| RA | 1,431,539 | G→A | 6.2% | V831I (GTT→ATT) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,431,550 | T→C | 6.1% | N834N (AAT→AAC) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,445,616 | G→C | 7.9% | A856P (GCA→CCA) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,445,621 | G→C | 7.6% | W857C (TGG→TGC) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,446,357:1 | +T | 19.0% | intergenic (+151/+21) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,446,362 | Δ1 bp | 25.0% | intergenic (+156/+16) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,449,050 | T→A | 35.2% | intergenic (+32/+26) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| RA | 1,451,536 | A→G | 6.6% | intergenic (‑187/+61) | tynA ← / ← paaZ | tyramine oxidase, copper‑requiring/oxepin‑CoA hydrolase and 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,451,537 | A→T | 6.4% | intergenic (‑188/+60) | tynA ← / ← paaZ | tyramine oxidase, copper‑requiring/oxepin‑CoA hydrolase and 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,451,538 | C→T | 6.5% | intergenic (‑189/+59) | tynA ← / ← paaZ | tyramine oxidase, copper‑requiring/oxepin‑CoA hydrolase and 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,462,028 | G→A | 6.3% | G379D (GGT→GAT) ‡ | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,462,029 | T→C | 6.6% | G379G (GGT→GGC) ‡ | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,483,342 | G→C | 10.0% | Q94H (CAG→CAC) | hrpA → | putative ATP‑dependent helicase |
| RA | 1,483,343 | G→C | 10.0% | V95L (GTG→CTG) | hrpA → | putative ATP‑dependent helicase |
| RA | 1,493,194 | G→C | 7.1% | S242T (AGT→ACT) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,499,361 | A→G | 5.8% | N142D (AAC→GAC) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,365 | A→T | 5.8% | Q143L (CAG→CTG) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,369 | C→T | 5.9% | V144V (GTC→GTT) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,517,481 | C→G | 8.9% | R31R (CGC→CGG) | ydcX → | DUF2566 family protein |
| RA | 1,517,484 | C→G | 7.5% | I32M (ATC→ATG) | ydcX → | DUF2566 family protein |
| RA | 1,534,897 | A→T | 8.5% | intergenic (+28/+68) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,534,898 | A→T | 8.5% | intergenic (+29/+67) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,534,904 | T→G | 8.5% | intergenic (+35/+61) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,534,905 | T→C | 8.5% | intergenic (+36/+60) | nhoA → / ← yddE | N‑hydroxyarylamine O‑acetyltransferase/PhzC‑PhzF family protein |
| RA | 1,541,077 | G→C | 8.8% | A505G (GCC→GGC) | narZ ← | nitrate reductase 2 (NRZ), alpha subunit |
| RA | 1,552,377 | G→A | 10.6% | intergenic (+386/+21) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,552,388 | T→C | 7.3% | intergenic (+397/+10) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/putative DNA‑binding transcriptional regulator |
| RA | 1,557,343 | C→T | 7.7% | T232T (ACG→ACA) ‡ | ddpF ← | D,D‑dipeptide ABC transporter ATPase |
| RA | 1,557,345 | T→A | 7.5% | T232S (ACG→TCG) ‡ | ddpF ← | D,D‑dipeptide ABC transporter ATPase |
| RA | 1,557,347 | A→G | 7.4% | L231P (CTG→CCG) | ddpF ← | D,D‑dipeptide ABC transporter ATPase |
| RA | 1,567,603 | C→A | 7.4% | V407V (GTG→GTT) | yddW ← | liprotein, glycosyl hydrolase homolog |
| RA | 1,568,915 | G→A | 8.8% | intergenic (‑92/+39) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,568,917 | A→T | 9.2% | intergenic (‑94/+37) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,568,919 | T→C | 9.1% | intergenic (‑96/+35) | yddW ← / ← gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,572,928 | C→G | 5.5% | A759P (GCA→CCA) | pqqL ← | putative periplasmic M16 family zinc metalloendopeptidase |
| RA | 1,579,563 | G→T | 8.2% | intergenic (‑221/+70) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,564 | G→A | 8.3% | intergenic (‑222/+69) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,569 | T→C | 6.7% | intergenic (‑227/+64) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,579,570 | A→C | 6.3% | intergenic (‑228/+63) | yddA ← / ← ydeM | putative multidrug ABC transporter permease/ATPase/putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,608,704 | A→G | 11.1% | S107P (TCG→CCG) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,608,707 | C→T | 8.7% | D106N (GAT→AAT) | yneE ← | bestrophin family putative inner membrane protein |
| RA | 1,626,126 | C→T | 5.5% | D419N (GAT→AAT) | dcp ← | dipeptidyl carboxypeptidase II |
| RA | 1,629,435 | Δ1 bp | 14.3% | intergenic (+17/+18) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,629,437:1 | +C | 12.9% | intergenic (+19/+16) | ydfZ → / ← ydfI | selenoprotein, function unknown/putative NAD‑dependent D‑mannonate oxidoreductase |
| RA | 1,647,873 | C→T | 5.2% | intergenic (‑23/‑61) | dicC ← / → dicA | Qin prophage; DNA‑binding transcriptional regulator for DicB/Qin prophage; putative regulator for DicB |
| RA | 1,651,559 | A→G | 5.3% | pseudogene (9/1158 nt) | intQ → | pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related |
| RA | 1,660,438 | A→G | 11.4% | S790S (TCA→TCG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,442 | C→G | 11.4% | L792V (CTG→GTG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,446 | C→T | 12.4% | A793V (GCG→GTG) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,681,614 | G→A | 6.5% | V213V (GTG→GTA) | folM → | dihydromonapterin reductase, NADPH‑dependent; dihydrofolate reductase isozyme |
| RA | 1,681,622 | T→A | 8.7% | L216Q (CTG→CAG) | folM → | dihydromonapterin reductase, NADPH‑dependent; dihydrofolate reductase isozyme |
| RA | 1,685,527 | A→G | 100% | G354G (GGT→GGC) | fumC ← | fumarate hydratase (fumarase C),aerobic Class II |
| RA | 1,689,817 | C→A | 6.8% | intergenic (+66/‑35) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,819 | A→T | 6.6% | intergenic (+68/‑33) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,689,821 | T→G | 6.0% | intergenic (+70/‑31) | manA → / → ydgA | mannose‑6‑phosphate isomerase/DUF945 family protein |
| RA | 1,701,108 | A→T | 7.7% | N51I (AAT→ATT) | malY → | PLP‑dependent beta‑cystathionase and maltose regulon regulator |
| RA | 1,703,251 | A→T | 31.8% | intergenic (+17/+17) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,703,252 | A→T | 32.0% | intergenic (+18/+16) | add → / ← ydgJ | adenosine deaminase/putative oxidoreductase |
| RA | 1,712,337 | A→T | 12.4% | intergenic (+179/‑432) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,712,338 | A→T | 12.5% | intergenic (+180/‑431) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,721,507 | A→C | 7.3% | I82L (ATC→CTC) | ydhJ → | putative membrane fusion protein (MFP) of YdhJK efflux pump |
| RA | 1,721,511 | C→G | 7.4% | A83G (GCC→GGC) | ydhJ → | putative membrane fusion protein (MFP) of YdhJK efflux pump |
| RA | 1,721,515 | G→T | 7.6% | E84D (GAG→GAT) | ydhJ → | putative membrane fusion protein (MFP) of YdhJK efflux pump |
| RA | 1,736,097 | T→A | 11.8% | intergenic (+138/+24) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,736,100 | T→A | 11.5% | intergenic (+141/+21) | sodB → / ← ydhP | superoxide dismutase, Fe/putative MFS transporter, inner membrane protein |
| RA | 1,749,025 | C→T | 5.5% | A179T (GCC→ACC) | ydhT ← | FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| RA | 1,758,358 | C→G | 6.7% | G123A (GGT→GCT) ‡ | ldtE ← | murein L,D‑transpeptidase |
| RA | 1,758,359 | C→G | 6.7% | G123R (GGT→CGT) ‡ | ldtE ← | murein L,D‑transpeptidase |
| RA | 1,763,450 | A→G | 10.3% | V187A (GTG→GCG) ‡ | sufB ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,763,451 | C→T | 10.3% | V187M (GTG→ATG) ‡ | sufB ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,764,687 | T→C | 11.5% | intergenic (‑301/+26) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,693 | C→T | 10.2% | intergenic (‑307/+20) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,694 | G→C | 10.5% | intergenic (‑308/+19) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,695 | A→G | 10.5% | intergenic (‑309/+18) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,764,701 | G→A | 11.1% | intergenic (‑315/+12) | sufA ← / ← rydB | Fe‑S cluster assembly protein/novel sRNA, function unknown |
| RA | 1,769,777 | T→G | 6.3% | V235G (GTA→GGA) | ydiK → | UPF0118 family inner membrane protein |
| RA | 1,769,780 | C→A | 6.2% | S236Y (TCC→TAC) | ydiK → | UPF0118 family inner membrane protein |
| RA | 1,788,507 | T→G | 6.1% | Y25D (TAT→GAT) | aroH → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
| RA | 1,788,510 | C→A | 6.5% | P26T (CCC→ACC) | aroH → | 3‑deoxy‑D‑arabino‑heptulosonate‑7‑phosphate synthase, tryptophan repressible |
| RA | 1,797,388 | G→T | 14.4% | P186Q (CCG→CAG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,797,391 | A→C | 14.1% | L185R (CTG→CGG) | pheT ← | phenylalanine tRNA synthetase, beta subunit |
| RA | 1,799,370 | Δ1 bp | 11.6% | intergenic (‑100/+23) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,799,374:1 | +T | 12.0% | intergenic (‑104/+19) | pheM ← / ← rplT | phenylalanyl‑tRNA synthetase operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,827,811 | T→G | 5.7% | K150T (AAA→ACA) | astB ← | succinylarginine dihydrolase |
| RA | 1,836,904 | A→G | 7.0% | S278G (AGC→GGC) ‡ | ynjB → | putative ABC transporter periplasmic binding protein |
| RA | 1,836,905 | G→C | 7.3% | S278T (AGC→ACC) ‡ | ynjB → | putative ABC transporter periplasmic binding protein |
| RA | 1,836,906 | C→T | 7.3% | S278S (AGC→AGT) ‡ | ynjB → | putative ABC transporter periplasmic binding protein |
| RA | 1,854,113 | T→C | 5.8% | I248V (ATC→GTC) | ydjF ← | putative DNA‑binding transcriptional regulator |
| RA | 1,856,333 | T→G | 6.2% | E199A (GAG→GCG) ‡ | ydjH ← | putative kinase |
| RA | 1,856,334 | C→A | 6.1% | E199* (GAG→TAG) ‡ | ydjH ← | putative kinase |
| RA | 1,861,425 | A→C | 5.2% | intergenic (‑93/+277) | ydjL ← / ← yeaC | putative Zn‑dependent NAD(P)‑binding oxidoreductase/DUF1315 family protein |
| RA | 1,861,428 | G→T | 5.1% | intergenic (‑96/+274) | ydjL ← / ← yeaC | putative Zn‑dependent NAD(P)‑binding oxidoreductase/DUF1315 family protein |
| RA | 1,864,758 | G→A | 34.8% | intergenic (+24/+24) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,763 | A→T | 48.0% | intergenic (+29/+19) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,768 | T→C | 42.3% | intergenic (+34/+14) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,865,682 | G→C | 22.4% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,868,859 | Δ1 bp | 12.4% | intergenic (+17/‑96) | yeaG → / → yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| RA | 1,868,865:1 | +G | 11.6% | intergenic (+23/‑90) | yeaG → / → yeaH | protein kinase, endogenous substrate unidentified; autokinase/UPF0229 family protein |
| RA | 1,872,130 | C→T | 8.1% | A30A (GCC→GCT) | yeaJ → | putative diguanylate cyclase |
| RA | 1,872,131 | A→G | 7.8% | S31G (AGC→GGC) | yeaJ → | putative diguanylate cyclase |
| RA | 1,880,851 | T→A | 5.7% | intergenic (‑92/+35) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,880,852 | T→A | 5.6% | intergenic (‑93/+34) | leuE ← / ← dmlR | leucine efflux protein/transcriptional activator of dmlA |
| RA | 1,883,027 | C→G | 26.1% | intergenic (+30/‑161) | dmlA → / → yeaV | D‑malate oxidase, NAD‑dependent; putative tartrate dehydrogenase/putative transporter |
| RA | 1,901,029 | Δ1 bp | 6.1% | coding (557/1557 nt) | yoaE ← | putative membrane protein/conserved protein |
| RA | 1,901,034 | C→G | 6.1% | T184T (ACG→ACC) | yoaE ← | putative membrane protein/conserved protein |
| RA | 1,901,038:1 | +T | 5.8% | coding (548/1557 nt) | yoaE ← | putative membrane protein/conserved protein |
| RA | 1,926,888 | C→A | 8.9% | G651V (GGC→GTC) | ptrB ← | protease II |
| RA | 1,926,891 | G→C | 8.4% | S650* (TCA→TGA) | ptrB ← | protease II |
| RA | 1,926,894 | T→G | 8.1% | D649A (GAC→GCC) | ptrB ← | protease II |
| RA | 1,926,900 | T→G | 10.7% | D647A (GAC→GCC) | ptrB ← | protease II |
| RA | 1,928,799 | A→C | 6.7% | L14R (CTT→CGT) | ptrB ← | protease II |
| RA | 1,928,802 | G→T | 6.8% | T13K (ACG→AAG) | ptrB ← | protease II |
| RA | 1,937,980 | G→A | 6.5% | G111D (GGT→GAT) | pykA → | pyruvate kinase II |
| RA | 1,937,983 | T→C | 6.4% | I112T (ATC→ACC) | pykA → | pyruvate kinase II |
| RA | 1,948,179 | T→A | 6.8% | intergenic (‑28/+1) | yebC ← / ← nudB | UPF0082 family protein/dihydroneopterin triphosphate pyrophosphatase |
| RA | 1,948,180 | T→A | 6.8% | *151C (TGA→TGT) | nudB ← | dihydroneopterin triphosphate pyrophosphatase |
| RA | 1,964,425 | G→C | 7.5% | A209G (GCC→GGC) | flhA ← | putative flagellar export pore protein |
| RA | 1,971,920 | G→T | 9.2% | Q258K (CAA→AAA) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | 1,971,923 | T→C | 9.6% | M257V (ATG→GTG) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | 1,971,926 | G→A | 10.0% | H256Y (CAT→TAT) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | 1,971,929 | A→C | 9.9% | S255A (TCA→GCA) | tar ← | methyl‑accepting chemotaxis protein II |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,985,112 | C→G | 20.3% | intergenic (‑43/+27) | araG ← / ← araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| RA | 1,987,442 | Δ1 bp | 11.2% | intergenic (+14/+65) | ftnB → / ← yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| RA | 1,987,450:1 | +A | 6.8% | intergenic (+22/+57) | ftnB → / ← yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| RA | 1,987,857 | C→T | 7.8% | intergenic (‑99/+16) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,858 | G→C | 7.8% | intergenic (‑100/+15) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,859 | G→C | 7.8% | intergenic (‑101/+14) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,860 | A→G | 7.8% | intergenic (‑102/+13) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,988,048 | A→T | 11.3% | intergenic (‑89/‑174) | azuC ← / → yecR | acid‑inducible small membrane‑associated protein/lipoprotein, function unknown |
| RA | 1,988,049 | C→T | 11.3% | intergenic (‑90/‑173) | azuC ← / → yecR | acid‑inducible small membrane‑associated protein/lipoprotein, function unknown |
| RA | 1,988,050 | A→G | 12.5% | intergenic (‑91/‑172) | azuC ← / → yecR | acid‑inducible small membrane‑associated protein/lipoprotein, function unknown |
| RA | 1,988,051 | A→T | 12.6% | intergenic (‑92/‑171) | azuC ← / → yecR | acid‑inducible small membrane‑associated protein/lipoprotein, function unknown |
| RA | 1,991,866 | T→A | 7.5% | noncoding (36/87 nt) | leuZ ← | tRNA‑Leu |
| RA | 2,001,982 | A→T | 11.1% | intergenic (‑193/+128) | fliA ← / ← fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| RA | 2,001,983 | A→T | 11.1% | intergenic (‑194/+127) | fliA ← / ← fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| RA | 2,001,989 | T→G | 10.8% | intergenic (‑200/+121) | fliA ← / ← fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| RA | 2,001,990 | T→C | 10.8% | intergenic (‑201/+120) | fliA ← / ← fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| RA | 2,009,731 | A→G | 7.9% | intergenic (+19/‑90) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,732 | C→G | 8.0% | intergenic (+20/‑89) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,733 | C→T | 8.0% | intergenic (+21/‑88) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,025,578 | G→A | 9.4% | S23N (AGT→AAT) ‡ | yedP → | putative mannosyl‑3‑phosphoglycerate phosphatase |
| RA | 2,025,579 | T→C | 9.6% | S23S (AGT→AGC) ‡ | yedP → | putative mannosyl‑3‑phosphoglycerate phosphatase |
| RA | 2,028,158 | G→C | 10.8% | intergenic (‑141/+30) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,159 | T→A | 10.8% | intergenic (‑142/+29) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,028,160 | G→C | 10.7% | intergenic (‑143/+28) | yedQ ← / ← yodC | putative membrane‑anchored diguanylate cyclase/uncharacterized protein |
| RA | 2,041,159 | G→A | 8.6% | intergenic (+41/‑216) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,160 | T→G | 8.6% | intergenic (+42/‑215) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,166 | G→T | 9.5% | intergenic (+48/‑209) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,167 | A→C | 9.5% | intergenic (+49/‑208) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,173 | C→A | 7.0% | intergenic (+55/‑202) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,041,174 | T→C | 6.5% | intergenic (+56/‑201) | yedZ → / → zinT | inner membrane heme subunit for periplasmic YedYZ reductase/zinc and cadmium binding protein, periplasmic |
| RA | 2,044,721 | G→A | 10.4% | intergenic (+97/‑217) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,044,725 | T→A | 9.0% | intergenic (+101/‑213) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,044,727 | T→A | 8.9% | intergenic (+103/‑211) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,044,729 | T→A | 9.0% | intergenic (+105/‑209) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,044,733 | T→C | 10.5% | intergenic (+109/‑205) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,074,691 | C→G | 14.5% | intergenic (+33/‑88) | flu → / → yeeR | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter/CP4‑44 prophage; putative membrane protein |
| RA | 2,079,004 | G→C | 11.1% | intergenic (+73/+28) | yoeF → / ← yeeX | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/UPF0265 family protein |
| RA | 2,081,688 | A→T | 14.1% | I287N (ATT→AAT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b |
| RA | 2,089,854 | A→T | 7.7% | intergenic (‑141/‑142) | yefM ← / → hisL | antitoxin of the YoeB‑YefM toxin‑antitoxin system/his operon leader peptide |
| RA | 2,090,122 | A→G | 50.1% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 47.7% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 55.3% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,103,105 | C→A | 5.8% | pseudogene (285/446 nt) | wbbL ← | pseudogene, lipopolysaccharide biosynthesis protein |
| RA | 2,103,106 | T→A | 5.8% | pseudogene (284/446 nt) | wbbL ← | pseudogene, lipopolysaccharide biosynthesis protein |
| RA | 2,103,107 | T→G | 5.8% | pseudogene (283/446 nt) | wbbL ← | pseudogene, lipopolysaccharide biosynthesis protein |
| RA | 2,115,847 | G→T | 17.4% | A17E (GCG→GAG) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,849 | C→G | 16.7% | S16S (TCG→TCC) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,851 | A→C | 16.7% | S16A (TCG→GCG) ‡ | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,115,859 | G→T | 7.0% | T13K (ACG→AAG) | wcaM ← | colanic acid biosynthesis protein |
| RA | 2,121,583 | Δ1 bp | 9.3% | intergenic (‑29/+26) | wcaJ ← / ← cpsG | colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase |
| RA | 2,121,586 | G→C | 9.2% | intergenic (‑32/+23) | wcaJ ← / ← cpsG | colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase |
| RA | 2,121,588:1 | +C | 9.9% | intergenic (‑34/+21) | wcaJ ← / ← cpsG | colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase |
| RA | 2,121,598 | A→G | 5.7% | intergenic (‑44/+11) | wcaJ ← / ← cpsG | colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase |
| RA | 2,145,313 | C→A | 100% | S683Y (TCC→TAC) | yegE → | putative diguanylate cyclase |
| RA | 2,151,969 | T→A | 5.2% | R168S (AGA→AGT) | yegK ← | ser/thr phosphatase‑related protein |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,177,332 | C→T | 10.9% | intergenic (‑128/+180) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,177,337 | G→T | 8.3% | intergenic (‑133/+175) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,177,340 | A→C | 8.2% | intergenic (‑136/+172) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,177,345 | A→G | 7.7% | intergenic (‑141/+167) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| RA | 2,187,314 | C→G | 11.9% | intergenic (+16/+66) | rcnB → / ← yehA | periplasmic modulator of Ni and Co efflux/putative fimbrial‑like adhesin protein |
| RA | 2,229,322 | C→G | 14.3% | intergenic (+257/+116) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,229,323 | C→G | 14.3% | intergenic (+258/+115) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,230,415 | T→A | 8.6% | intergenic (‑30/‑209) | dusC ← / → yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein |
| RA | 2,230,416 | G→C | 8.6% | intergenic (‑31/‑208) | dusC ← / → yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein |
| RA | 2,230,417 | T→A | 8.8% | intergenic (‑32/‑207) | dusC ← / → yohJ | tRNA‑dihydrouridine synthase C/UPF0299 family inner membrane protein |
| RA | 2,232,804 | A→T | 6.2% | intergenic (+76/‑74) | cdd → / → sanA | cytidine/deoxycytidine deaminase/DUF218 superfamily vancomycin high temperature exclusion protein |
| RA | 2,233,721 | A→T | 6.3% | E41V (GAA→GTA) ‡ | yeiS → | DUF2542 family protein |
| RA | 2,233,722 | A→T | 6.3% | E41D (GAA→GAT) ‡ | yeiS → | DUF2542 family protein |
| RA | 2,238,656 | T→A | 5.8% | I212F (ATC→TTC) | mglA ← | methyl‑galactoside ABC transporter ATPase |
| RA | 2,238,657 | T→A | 6.5% | E211D (GAA→GAT) | mglA ← | methyl‑galactoside ABC transporter ATPase |
| RA | 2,255,991 | A→T | 11.8% | K213* (AAA→TAA) ‡ | yeiL → | putative transcriptional regulator |
| RA | 2,255,992 | A→T | 12.0% | K213I (AAA→ATA) ‡ | yeiL → | putative transcriptional regulator |
| RA | 2,259,549 | A→T | 7.3% | intergenic (‑253/+170) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,550 | A→T | 8.4% | intergenic (‑254/+169) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,553 | A→T | 8.3% | intergenic (‑257/+166) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,554 | A→T | 8.3% | intergenic (‑258/+165) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,259,686 | A→G | 7.4% | intergenic (‑390/+33) | psuK ← / ← fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,270,602 | T→C | 7.0% | intergenic (+57/‑124) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,270,605 | G→A | 7.7% | intergenic (+60/‑121) | mepS → / → rtn | murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD‑carboxypeptidase/resistance protein for phages lambda and N4, putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 2,274,441 | A→C | 5.5% | E88A (GAG→GCG) | yejB → | microcin C ABC transporter permease |
| RA | 2,284,338 | C→T | 8.0% | N70N (AAC→AAT) | yejL → | UPF0352 family protein |
| RA | 2,286,311 | C→G | 27.6% | intergenic (+24/+79) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,313 | T→A | 27.5% | intergenic (+26/+77) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,286,315 | C→G | 27.6% | intergenic (+28/+75) | proL → / ← yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,302,452 | A→C | 9.0% | L101R (CTG→CGG) | napA ← | nitrate reductase, periplasmic, large subunit |
| RA | 2,302,455 | G→T | 8.9% | P100Q (CCG→CAG) | napA ← | nitrate reductase, periplasmic, large subunit |
| RA | 2,305,085 | A→G | 20.0% | intergenic (+692/+23) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,086 | C→G | 19.4% | intergenic (+693/+22) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,305,087 | C→T | 19.4% | intergenic (+694/+21) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,311,616 | C→T | 9.9% | intergenic (‑82/+30) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,311,619 | A→G | 9.6% | intergenic (‑85/+27) | apbE ← / ← ompC | putative thiamine‑synthetic flavin transferase lipoprotein/outer membrane porin protein C |
| RA | 2,314,800 | A→C | 8.4% | Q438P (CAG→CCG) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,314,801 | G→T | 8.4% | Q438H (CAG→CAT) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,318,095 | C→G | 100% | L594F (TTG→TTC) | rcsC ← | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| RA | 2,323,275 | T→A | 7.9% | intergenic (+24/‑172) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,280 | A→G | 9.1% | intergenic (+29/‑167) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,283 | G→C | 8.6% | intergenic (+32/‑164) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,286 | C→T | 8.6% | intergenic (+35/‑161) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,323,291 | T→A | 8.6% | intergenic (+40/‑156) | atoC → / → atoD | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein/acetyl‑CoA:acetoacetyl‑CoA transferase, alpha subunit |
| RA | 2,329,708 | A→G | 9.2% | G30G (GGT→GGC) ‡ | yfaQ ← | tandem DUF2300 domain protein, putative host defense protein |
| RA | 2,329,709 | C→G | 9.2% | G30A (GGT→GCT) ‡ | yfaQ ← | tandem DUF2300 domain protein, putative host defense protein |
| RA | 2,329,710 | C→T | 10.2% | G30S (GGT→AGT) ‡ | yfaQ ← | tandem DUF2300 domain protein, putative host defense protein |
| RA | 2,340,372 | A→G | 7.9% | intergenic (+83/+45) | ubiG → / ← yfaL | bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase/ 2‑octaprenyl‑6‑hydroxy phenol methylase/adhesin |
| RA | 2,340,373 | A→C | 7.9% | intergenic (+84/+44) | ubiG → / ← yfaL | bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase/ 2‑octaprenyl‑6‑hydroxy phenol methylase/adhesin |
| RA | 2,340,379 | T→A | 8.2% | intergenic (+90/+38) | ubiG → / ← yfaL | bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase/ 2‑octaprenyl‑6‑hydroxy phenol methylase/adhesin |
| RA | 2,340,380 | T→A | 8.1% | intergenic (+91/+37) | ubiG → / ← yfaL | bifunctional 3‑demethylubiquinone‑9 3‑methyltransferase/ 2‑octaprenyl‑6‑hydroxy phenol methylase/adhesin |
| RA | 2,364,995 | T→G | 11.2% | intergenic (+16/+23) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,364,998 | C→A | 10.7% | intergenic (+19/+20) | nudI → / ← ais | nucleoside triphosphatase/putative LPS core heptose(II)‑phosphate phosphatase |
| RA | 2,375,483 | A→T | 12.4% | L160L (CTT→CTA) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,375,484 | A→T | 12.4% | L160H (CTT→CAT) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,383,956 | A→T | 20.0% | intergenic (+32/+39) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,383,959 | A→T | 18.2% | intergenic (+35/+36) | elaD → / ← yfbK | protease, capable of cleaving an AMC‑ubiquitin model substrate/Von Willebrand factor domain putative lipoprotein |
| RA | 2,390,012 | Δ1 bp | 10.5% | intergenic (+48/+36) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,390,016:1 | +C | 10.1% | intergenic (+52/+32) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,390,023:1 | +T | 5.1% | intergenic (+59/+25) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,390,024 | C→T | 6.4% | intergenic (+60/+24) | yfbP → / ← nuoN | TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,391,414 | C→G | 8.8% | R31P (CGA→CCA) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,391,417 | C→G | 9.4% | W30S (TGG→TCG) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,400,684 | T→A | 5.4% | Q291L (CAG→CTG) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
| RA | 2,414,689 | C→G | 13.3% | intergenic (+17/‑58) | ackA → / → pta | acetate kinase A and propionate kinase 2/phosphate acetyltransferase |
| RA | 2,415,725 | C→A | 9.7% | L327M (CTG→ATG) ‡ | pta → | phosphate acetyltransferase |
| RA | 2,415,726 | T→G | 9.6% | L327R (CTG→CGG) ‡ | pta → | phosphate acetyltransferase |
| RA | 2,416,941 | A→G | 7.5% | intergenic (+50/‑140) | pta → / → yfcC | phosphate acetyltransferase/putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein |
| RA | 2,416,943 | C→G | 7.7% | intergenic (+52/‑138) | pta → / → yfcC | phosphate acetyltransferase/putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein |
| RA | 2,416,945 | C→T | 8.5% | intergenic (+54/‑136) | pta → / → yfcC | phosphate acetyltransferase/putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein |
| RA | 2,419,395 | C→G | 6.3% | V132L (GTG→CTG) | yfcE ← | phosphodiesterase activity on bis‑pNPP |
| RA | 2,420,183 | A→G | 6.8% | R101R (CGT→CGC) | yfcF ← | glutathione S‑transferase |
| RA | 2,420,186 | C→T | 6.7% | A100A (GCG→GCA) | yfcF ← | glutathione S‑transferase |
| RA | 2,428,697 | A→G | 8.7% | intergenic (‑71/+24) | ubiX ← / ← purF | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase |
| RA | 2,428,699 | A→T | 8.5% | intergenic (‑73/+22) | ubiX ← / ← purF | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase |
| RA | 2,428,701 | C→T | 8.9% | intergenic (‑75/+20) | ubiX ← / ← purF | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase |
| RA | 2,432,985 | A→G | 7.9% | intergenic (‑43/+27) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,432,990 | G→C | 7.2% | intergenic (‑48/+22) | folC ← / ← accD | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase/acetyl‑CoA carboxylase, beta (carboxyltransferase) subunit |
| RA | 2,440,865 | C→T | 6.9% | L247L (CTG→CTA) ‡ | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,440,866 | A→G | 6.9% | L247P (CTG→CCG) ‡ | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,462,643 | C→A | 6.0% | F446L (TTC→TTA) | fadL → | long‑chain fatty acid outer membrane transporter |
| RA | 2,462,645 | G→C | 6.3% | *447S (TGA→TCA) | fadL → | long‑chain fatty acid outer membrane transporter |
| RA | 2,462,647 | T→G | 6.8% | intergenic (+1/‑365) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,677 | A→T | 23.0% | intergenic (+31/‑335) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,678 | T→A | 21.4% | intergenic (+32/‑334) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,462,679 | A→T | 20.0% | intergenic (+33/‑333) | fadL → / → yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| RA | 2,474,878 | T→C | 8.7% | intergenic (+22/‑106) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,474,881 | G→A | 10.7% | intergenic (+25/‑103) | yfdQ → / → yfdR | CPS‑53 (KpLE1) prophage; uncharacterized protein/CPS‑53 (KpLE1) prophage; conserved protein |
| RA | 2,517,427 | T→C | 5.3% | I136V (ATC→GTC) | yfeA ← | putative diguanylate cyclase |
| RA | 2,517,438 | G→A | 5.5% | T132M (ACG→ATG) | yfeA ← | putative diguanylate cyclase |
| RA | 2,518,082 | C→G | 9.8% | noncoding (35/76 nt) | alaX ← | tRNA‑Ala |
| RA | 2,518,197 | C→G | 8.1% | noncoding (35/76 nt) | alaW ← | tRNA‑Ala |
| RA | 2,519,222 | T→G | 9.3% | intergenic (+17/+35) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,225 | T→A | 9.3% | intergenic (+20/+32) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,519,228 | C→A | 8.8% | intergenic (+23/+29) | yfeD → / ← gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| RA | 2,525,907 | G→A | 10.3% | intergenic (+16/+23) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,525,908 | C→G | 10.0% | intergenic (+17/+22) | yfeN → / ← yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| RA | 2,532,268 | T→C | 13.7% | intergenic (+44/‑141) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,272 | T→A | 14.2% | intergenic (+48/‑137) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,275 | T→A | 14.3% | intergenic (+51/‑134) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,532,279 | G→A | 14.7% | intergenic (+55/‑130) | cysZ → / → cysK | sulfate transporter, sulfite inhibited/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| RA | 2,533,415 | T→A | 13.0% | intergenic (+35/‑349) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,533,416 | T→A | 13.0% | intergenic (+36/‑348) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,533,417 | T→A | 13.1% | intergenic (+37/‑347) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,533,418 | T→A | 13.1% | intergenic (+38/‑346) | cysK → / → ptsH | cysteine synthase A, O‑acetylserine sulfhydrolase A subunit/phosphohistidinoprotein‑hexose phosphotransferase component of PTS system (Hpr) |
| RA | 2,549,549 | C→A | 7.1% | intergenic (+143/+97) | yfeW → / ← yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| RA | 2,549,608 | T→C | 5.2% | intergenic (+202/+38) | yfeW → / ← yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| RA | 2,549,609 | G→A | 5.1% | intergenic (+203/+37) | yfeW → / ← yfeX | penicillin binding protein PBP4B; weak DD‑carboxypeptidase activity/porphyrinogen oxidase, cytoplasmic |
| RA | 2,550,574 | C→G | 10.0% | intergenic (‑29/+67) | yfeX ← / ← yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| RA | 2,550,576 | A→T | 10.0% | intergenic (‑31/+65) | yfeX ← / ← yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| RA | 2,550,578 | C→G | 10.0% | intergenic (‑33/+63) | yfeX ← / ← yfeY | porphyrinogen oxidase, cytoplasmic/RpoE‑regulated lipoprotein |
| RA | 2,558,855 | G→T | 5.2% | intergenic (‑176/‑3) | eutB ← / → intZ | ethanolamine ammonia‑lyase, large subunit, heavy chain/CPZ‑55 prophage; putative phage integrase |
| RA | 2,560,317 | A→C | 10.3% | N21H (AAT→CAT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,321 | C→T | 10.8% | A22V (GCT→GTT) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,326 | A→G | 9.8% | T24A (ACA→GCA) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,560,330 | G→T | 11.1% | C25F (TGC→TTC) | yffL → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,561,205 | A→T | 6.8% | intergenic (+307/‑163) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,561,206 | A→T | 6.8% | intergenic (+308/‑162) | yffL → / → yffM | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,575,647 | C→G | 8.5% | M53I (ATG→ATC) | eutS ← | putative ethanol utilization carboxysome structural protein |
| RA | 2,581,762 | G→A | 6.0% | A339V (GCC→GTC) | ypfG ← | DUF1176 family protein |
| RA | 2,581,765 | T→C | 5.7% | D338G (GAC→GGC) | ypfG ← | DUF1176 family protein |
| RA | 2,587,131 | G→C | 5.2% | Q467H (CAG→CAC) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,587,132 | G→C | 5.2% | V468L (GTG→CTG) | narQ → | sensory histidine kinase in two‑component regulatory system with NarP |
| RA | 2,589,122 | G→A | 9.3% | G510S (GGC→AGC) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,589,125 | T→C | 9.7% | F511L (TTT→CTT) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,590,767 | T→C | 12.1% | intergenic (+59/+40) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,590,771 | C→G | 11.6% | intergenic (+63/+36) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,590,775 | G→A | 7.6% | intergenic (+67/+32) | acrD → / ← ypfM | aminoglycoside/multidrug efflux system/stress‑induced small enterobacterial protein |
| RA | 2,596,873 | Δ1 bp | 12.3% | intergenic (‑136/+32) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,596,878:1 | +G | 11.3% | intergenic (‑141/+27) | ypfJ ← / ← purC | putative neutral zinc metallopeptidase/phosphoribosylaminoimidazole‑succinocarboxamide synthetase |
| RA | 2,598,014 | A→T | 5.0% | S284S (TCT→TCA) | bamC ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,616,606 | G→C | 8.2% | A171A (GCG→GCC) | bepA → | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| RA | 2,616,609 | G→C | 8.0% | M172I (ATG→ATC) | bepA → | OM protein maintenance and assembly metalloprotease and chaperone, periplasmic |
| RA | 2,620,216 | C→T | 51.0% | intergenic (‑56/+30) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | 2,620,218 | T→A | 36.4% | intergenic (‑58/+28) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | 2,620,220 | A→G | 28.6% | intergenic (‑60/+26) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | 2,622,348:1 | +A | 11.8% | coding (115/639 nt) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,622,354 | Δ1 bp | 16.4% | coding (121/639 nt) | purN → | phosphoribosylglycinamide formyltransferase 1 |
| RA | 2,637,234 | C→A | 6.7% | K41N (AAG→AAT) ‡ | der ← | GTPase; multicopy suppressor of ftsJ |
| RA | 2,637,235 | T→G | 6.7% | K41T (AAG→ACG) ‡ | der ← | GTPase; multicopy suppressor of ftsJ |
| RA | 2,637,433 | C→T | 10.1% | intergenic (‑77/+41) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,438 | T→G | 9.0% | intergenic (‑82/+36) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,439 | C→A | 11.1% | intergenic (‑83/+35) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,637,444 | A→G | 8.6% | intergenic (‑88/+30) | der ← / ← bamB | GTPase; multicopy suppressor of ftsJ/BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,638,584 | A→T | 8.0% | F23L (TTT→TTA) | bamB ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,650,497 | A→G | 7.1% | G597G (GGT→GGC) ‡ | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,650,498 | C→T | 7.1% | G597D (GGT→GAT) ‡ | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,652,131 | G→T | 5.2% | P53T (CCG→ACG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,652,132 | C→G | 5.3% | V52V (GTG→GTC) ‡ | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,652,133 | A→C | 5.3% | V52G (GTG→GGG) ‡ | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,653,104 | G→C | 5.4% | W204S (TGG→TCG) ‡ | sseA → | 3‑mercaptopyruvate sulfurtransferase |
| RA | 2,653,105 | G→C | 5.4% | W204C (TGG→TGC) ‡ | sseA → | 3‑mercaptopyruvate sulfurtransferase |
| RA | 2,653,367 | G→A | 45.4% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 40.9% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,660,611 | G→T | 7.1% | Y307* (TAC→TAA) ‡ | iscS ← | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| RA | 2,660,612 | T→A | 7.0% | Y307F (TAC→TTC) ‡ | iscS ← | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| RA | 2,660,613 | A→C | 7.7% | Y307D (TAC→GAC) ‡ | iscS ← | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| RA | 2,663,466 | G→T | 5.4% | V9L (GTG→TTG) | suhB → | inositol monophosphatase |
| RA | 2,663,474 | A→T | 6.1% | A11A (GCA→GCT) | suhB → | inositol monophosphatase |
| RA | 2,663,482 | A→C | 6.5% | K14T (AAG→ACG) | suhB → | inositol monophosphatase |
| RA | 2,680,639 | T→C | 6.1% | S703G (AGC→GGC) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,680,640 | G→A | 6.4% | A702A (GCC→GCT) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,684,202 | C→T | 6.3% | intergenic (+146/+52) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,207 | C→G | 6.4% | intergenic (+151/+47) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,210 | C→G | 5.3% | intergenic (+154/+44) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,684,215 | A→G | 5.0% | intergenic (+159/+39) | yphH → / ← glyA | putative DNA‑binding transcriptional regulator/serine hydroxymethyltransferase |
| RA | 2,691,169 | A→T | 17.5% | noncoding (172/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,171 | T→A | 16.9% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,173 | A→T | 17.2% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,704,304 | A→G | 16.0% | intergenic (‑241/+31) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,306 | A→T | 12.7% | intergenic (‑243/+29) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,704,308 | C→T | 12.5% | intergenic (‑245/+27) | rnc ← / ← lepB | RNase III/leader peptidase (signal peptidase I) |
| RA | 2,706,121:1 | +T | 5.5% | coding (1004/1800 nt) | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,706,134 | Δ1 bp | 7.8% | coding (991/1800 nt) | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,706,606 | G→T | 5.2% | L173L (CTC→CTA) ‡ | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,706,607 | A→C | 5.0% | L173R (CTC→CGC) ‡ | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,707,320 | A→T | 8.3% | intergenic (‑196/+2) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,707,321 | A→T | 8.3% | intergenic (‑197/+1) | lepA ← / ← rseC | back‑translocating elongation factor EF4, GTPase/SoxR iron‑sulfur cluster reduction factor component |
| RA | 2,715,258 | A→G | 8.6% | A21A (GCT→GCC) ‡ | yfiE ← | putative DNA‑binding transcriptional regulator |
| RA | 2,715,259 | G→C | 8.5% | A21G (GCT→GGT) ‡ | yfiE ← | putative DNA‑binding transcriptional regulator |
| RA | 2,715,260 | C→T | 8.5% | A21T (GCT→ACT) ‡ | yfiE ← | putative DNA‑binding transcriptional regulator |
| RA | 2,716,030 | T→G | 30.5% | intergenic (+20/+36) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,716,033 | C→A | 32.4% | intergenic (+23/+33) | eamB → / ← grcA | cysteine and O‑acetylserine exporter/autonomous glycyl radical cofactor |
| RA | 2,731,073 | A→T | 6.2% | noncoding (85/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,731,074 | A→T | 6.4% | noncoding (84/1542 nt) | rrsG ← | 16S ribosomal RNA of rrnG operon |
| RA | 2,736,911 | C→T | 23.5% | intergenic (+28/‑243) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,736,913 | T→A | 21.1% | intergenic (+30/‑241) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,736,914 | T→A | 21.1% | intergenic (+31/‑240) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,736,916 | A→G | 21.1% | intergenic (+33/‑238) | bamD → / → raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| RA | 2,745,062 | T→G | 7.1% | K93T (AAG→ACG) ‡ | trmD ← | tRNA m(1)G37 methyltransferase, SAM‑dependent |
| RA | 2,745,063 | T→G | 7.1% | K93Q (AAG→CAG) ‡ | trmD ← | tRNA m(1)G37 methyltransferase, SAM‑dependent |
| RA | 2,750,073 | G→T | 13.9% | intergenic (+13/+42) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,078 | T→G | 11.8% | intergenic (+18/+37) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,081 | C→A | 12.8% | intergenic (+21/+34) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,750,086 | A→C | 11.6% | intergenic (+26/+29) | yfjD → / ← grpE | UPF0053 family inner membrane protein/heat shock protein |
| RA | 2,761,620 | T→G | 13.2% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 11.9% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,767,667 | T→G | 19.1% | intergenic (+312/‑43) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,767,670 | C→A | 25.0% | intergenic (+315/‑40) | rnlB → / → yfjP | CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,768,609 | T→C | 9.4% | intergenic (+36/‑56) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,614 | A→C | 9.4% | intergenic (+41/‑51) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,615 | G→T | 10.0% | intergenic (+42/‑50) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,620 | G→A | 11.8% | intergenic (+47/‑45) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,777,571 | A→G | 5.9% | D40G (GAC→GGC) | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,777,573 | A→G | 6.0% | T41A (ACG→GCG) ‡ | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,777,574 | C→T | 6.0% | T41M (ACG→ATG) ‡ | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,777,576 | C→T | 5.4% | P42S (CCG→TCG) | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,799,389 | T→A | 9.4% | S76T (TCG→ACG) | alaE → | alanine exporter, alanine‑inducible, stress‑responsive |
| RA | 2,800,515 | C→A | 21.4% | intergenic (+40/‑208) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,517 | T→A | 20.0% | intergenic (+42/‑206) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,800,519 | T→G | 18.8% | intergenic (+44/‑204) | ygaM → / → nrdH | putative membrane‑anchored DUF883 family ribosome‑binding protein/hydrogen donor for NrdEF electron transport system; glutaredoxin‑like protein |
| RA | 2,801,056 | A→T | 9.2% | N31I (AAT→ATT) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,807,091 | T→C | 9.1% | intergenic (+17/‑41) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,093 | A→T | 9.1% | intergenic (+19/‑39) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,807,095 | G→A | 9.0% | intergenic (+21/‑37) | proW → / → proX | glycine betaine/proline ABC transporter permease/glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein |
| RA | 2,814,174 | T→A | 20.0% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 20.0% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,817,977 | A→T | 5.1% | intergenic (‑117/+82) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,817,978 | A→T | 5.1% | intergenic (‑118/+81) | argQ ← / ← argZ | tRNA‑Arg/tRNA‑Arg |
| RA | 2,823,838 | C→A | 6.8% | intergenic (‑69/+11) | recA ← / ← pncC | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor/nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase |
| RA | 2,823,839 | T→G | 6.8% | intergenic (‑70/+10) | recA ← / ← pncC | DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor/nicotinamide‑nucleotide amidohydrolase; NMN amidohydrolase |
| RA | 2,827,198 | G→C | 5.5% | A269A (GCG→GCC) | srlE → | glucitol/sorbitol‑specific enzyme IIB component of PTS |
| RA | 2,838,222 | A→T | 9.1% | intergenic (‑117/+32) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,838,231 | A→T | 7.6% | intergenic (‑126/+23) | hydN ← / ← ascG | formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit/asc operon transcriptional repressor; prpBC operon repressor |
| RA | 2,842,437 | G→T | 9.1% | intergenic (+23/+136) | ascB → / ← hycI | cryptic 6‑phospho‑beta‑glucosidase/protease involved in processing C‑terminal end of HycE |
| RA | 2,842,438 | A→C | 9.2% | intergenic (+24/+135) | ascB → / ← hycI | cryptic 6‑phospho‑beta‑glucosidase/protease involved in processing C‑terminal end of HycE |
| RA | 2,859,332 | T→G | 7.1% | L747R (CTC→CGC) ‡ | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,859,333 | C→A | 6.3% | L747L (CTC→CTA) ‡ | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,863,772 | G→A | 5.2% | R60R (CGG→CGA) | ygbL → | putative class II aldolase |
| RA | 2,863,777 | C→G | 5.1% | S62C (TCC→TGC) ‡ | ygbL → | putative class II aldolase |
| RA | 2,863,778 | C→G | 5.1% | S62S (TCC→TCG) ‡ | ygbL → | putative class II aldolase |
| RA | 2,866,487 | G→C | 16.5% | intergenic (+22/+72) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,866,488 | G→C | 16.7% | intergenic (+23/+71) | ygbN → / ← rpoS | putative transporter/RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,873,915 | A→G | 12.6% | H26H (CAT→CAC) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,917 | G→C | 12.7% | H26D (CAT→GAT) ‡ | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,873,919 | C→T | 13.1% | G25D (GGT→GAT) | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,900,322 | C→T | 29.0% | intergenic (‑49/‑270) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,900,324 | G→T | 24.8% | intergenic (‑51/‑268) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,900,327 | A→C | 24.2% | intergenic (‑54/‑265) | ygcW ← / → yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| RA | 2,907,998 | A→T | 17.5% | intergenic (‑57/+31) | eno ← / ← pyrG | enolase/CTP synthetase |
| RA | 2,911,007 | G→A | 7.9% | R29C (CGT→TGT) | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,911,008 | A→T | 7.7% | H28Q (CAT→CAA) ‡ | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,911,009 | T→C | 7.9% | H28R (CAT→CGT) ‡ | mazF ← | mRNA interferase toxin, antitoxin is MazE |
| RA | 2,926,036 | A→C | 8.1% | E230A (GAA→GCA) | queF → | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) |
| RA | 2,926,039 | A→T | 8.1% | Q231L (CAG→CTG) | queF → | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) |
| RA | 2,926,042 | G→T | 8.3% | C232F (TGC→TTC) | queF → | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) |
| RA | 2,933,395 | G→T | 5.2% | C98* (TGC→TGA) | fucA ← | L‑fuculose‑1‑phosphate aldolase |
| RA | 2,936,359 | T→A | 9.9% | V259D (GTT→GAT) ‡ | fucI → | L‑fucose isomerase |
| RA | 2,936,360 | T→A | 9.9% | V259V (GTT→GTA) ‡ | fucI → | L‑fucose isomerase |
| RA | 2,951,471 | G→A | 5.3% | R331C (CGC→TGC) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,971,146 | T→C | 8.3% | intergenic (+13/‑125) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,151 | T→C | 7.8% | intergenic (+18/‑120) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,154 | G→A | 7.8% | intergenic (+21/‑117) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,159 | G→A | 8.3% | intergenic (+26/‑112) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,976,320 | T→G | 10.9% | noncoding (66/82 nt) | omrB ← | sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent |
| RA | 2,976,321 | C→A | 10.7% | noncoding (65/82 nt) | omrB ← | sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent |
| RA | 2,976,330 | C→T | 6.2% | noncoding (56/82 nt) | omrB ← | sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq‑dependent |
| RA | 2,980,742 | A→G | 19.0% | intergenic (‑107/+22) | ygeA ← / ← araE | Asp/Glu_racemase family protein/arabinose transporter |
| RA | 2,987,103 | C→T | 5.4% | intergenic (+27/‑433) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,104 | T→A | 5.4% | intergenic (+28/‑432) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 2,987,105 | A→G | 5.3% | intergenic (+29/‑431) | yqeG → / → yqeH | putative transporter/putative LuxR family transcriptional regulator |
| RA | 3,020,510 | G→T | 13.6% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 16.4% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 17.8% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,021,915 | C→A | 5.9% | A200A (GCC→GCA) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,021,916 | T→G | 5.8% | C201G (TGC→GGC) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,046,006 | A→C | 5.9% | intergenic (‑105/+162) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,046,070 | T→G | 6.2% | intergenic (‑169/+98) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,046,075 | A→T | 6.2% | intergenic (‑174/+93) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,046,076 | A→T | 6.2% | intergenic (‑175/+92) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,046,077 | A→T | 6.2% | intergenic (‑176/+91) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,046,082 | C→A | 6.9% | intergenic (‑181/+86) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| RA | 3,052,886 | C→G | 6.6% | A211A (GCG→GCC) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding |
| RA | 3,052,890 | A→C | 6.5% | L210R (CTG→CGG) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding |
| RA | 3,052,893 | G→T | 6.8% | P209Q (CCG→CAG) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding |
| RA | 3,052,897 | C→G | 7.0% | G208R (GGC→CGC) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol hydroxylase, FAD/NAD(P)‑binding |
| RA | 3,057,140 | A→G | 10.6% | intergenic (+152/+38) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,145 | G→C | 10.9% | intergenic (+157/+33) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,057,150 | C→T | 11.1% | intergenic (+162/+28) | sibC → / ← serA | sRNA antisense regulator of toxic IbsC protein/D‑3‑phosphoglycerate dehydrogenase |
| RA | 3,059,703 | A→T | 9.8% | intergenic (‑2/‑50) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,059,704 | A→T | 9.8% | intergenic (‑3/‑49) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,061,817 | G→C | 8.1% | W323S (TGG→TCG) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,061,818 | G→C | 8.0% | W323C (TGG→TGC) ‡ | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,066,293 | T→C | 6.7% | D294G (GAC→GGC) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,299:1 | +G | 6.7% | coding (875/897 nt) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,307 | Δ1 bp | 5.9% | coding (867/897 nt) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,308 | A→T | 7.8% | I289N (ATT→AAT) ‡ | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,309 | T→A | 7.6% | I289F (ATT→TTT) ‡ | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,310 | A→T | 7.6% | H288Q (CAT→CAA) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,310:1 | +T | 5.9% | coding (864/897 nt) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,066,319 | Δ1 bp | 7.6% | coding (855/897 nt) | ygfI ← | putative DNA‑binding transcriptional regulator |
| RA | 3,067,320 | A→T | 29.9% | intergenic (‑147/+20) | ygfI ← / ← yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| RA | 3,067,323 | A→T | 25.5% | intergenic (‑150/+17) | ygfI ← / ← yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| RA | 3,078,186 | C→T | 5.1% | G225D (GGC→GAC) | cmtA ← | putative mannitol‑specific PTS IIB and IIC components |
| RA | 3,082,701 | A→G | 6.2% | intergenic (+30/+176) | loiP → / ← speB | Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; Era‑binding heat shock protein/agmatinase |
| RA | 3,082,702 | A→C | 6.3% | intergenic (+31/+175) | loiP → / ← speB | Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; Era‑binding heat shock protein/agmatinase |
| RA | 3,082,708 | T→G | 6.5% | intergenic (+37/+169) | loiP → / ← speB | Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; Era‑binding heat shock protein/agmatinase |
| RA | 3,082,709 | C→A | 6.5% | intergenic (+38/+168) | loiP → / ← speB | Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; Era‑binding heat shock protein/agmatinase |
| RA | 3,082,715 | G→T | 6.3% | intergenic (+44/+162) | loiP → / ← speB | Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; Era‑binding heat shock protein/agmatinase |
| RA | 3,082,716 | C→T | 6.3% | intergenic (+45/+161) | loiP → / ← speB | Phe‑Phe periplasmic metalloprotease, OM lipoprotein; low salt‑inducible; Era‑binding heat shock protein/agmatinase |
| RA | 3,092,774:1 | +A | 11.4% | coding (897/951 nt) | gshB → | glutathione synthetase |
| RA | 3,092,779 | Δ1 bp | 11.4% | coding (902/951 nt) | gshB → | glutathione synthetase |
| RA | 3,095,151 | T→C | 6.1% | A18A (GCT→GCC) | yggS → | UPF0001 family protein, PLP‑binding |
| RA | 3,098,515 | G→C | 6.9% | intergenic (+112/+43) | yggW → / ← yggM | HemN family putative oxidoreductase/DUF1202 family putative secreted protein |
| RA | 3,098,518 | C→T | 6.5% | intergenic (+115/+40) | yggW → / ← yggM | HemN family putative oxidoreductase/DUF1202 family putative secreted protein |
| RA | 3,098,519 | A→G | 6.5% | intergenic (+116/+39) | yggW → / ← yggM | HemN family putative oxidoreductase/DUF1202 family putative secreted protein |
| RA | 3,098,522 | G→C | 6.7% | intergenic (+119/+36) | yggW → / ← yggM | HemN family putative oxidoreductase/DUF1202 family putative secreted protein |
| RA | 3,101,541 | G→C | 13.3% | P28R (CCG→CGG) | yggN ← | DUF2884 family putative periplasmic protein |
| RA | 3,111,083 | T→G | 5.8% | E15A (GAA→GCA) ‡ | yghD ← | putative membrane‑anchored secretion pathway M‑type protein |
| RA | 3,111,084 | C→A | 5.9% | E15* (GAA→TAA) ‡ | yghD ← | putative membrane‑anchored secretion pathway M‑type protein |
| RA | 3,111,823 | C→T | 5.4% | pseudogene (268/963 nt) | yghE ← | pseudogene, secretion pathway protein, L‑type protein homology; putative general secretion pathway for protein export (GSP) |
| RA | 3,131,524 | A→G | 6.8% | S295S (AGT→AGC) ‡ | yghQ ← | putative inner membrane polysaccharide flippase |
| RA | 3,131,525 | C→T | 6.0% | S295N (AGT→AAT) ‡ | yghQ ← | putative inner membrane polysaccharide flippase |
| RA | 3,155,227 | C→A | 5.3% | intergenic (‑9/‑128) | yqhC ← / → yqhD | transcriptional activator of yqhD/aldehyde reductase, NADPH‑dependent |
| RA | 3,155,228 | A→G | 5.9% | intergenic (‑10/‑127) | yqhC ← / → yqhD | transcriptional activator of yqhD/aldehyde reductase, NADPH‑dependent |
| RA | 3,155,230 | T→G | 5.3% | intergenic (‑12/‑125) | yqhC ← / → yqhD | transcriptional activator of yqhD/aldehyde reductase, NADPH‑dependent |
| RA | 3,156,590 | C→A | 7.6% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 7.6% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,169,260 | Δ1 bp | 6.8% | intergenic (‑29/+24) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,169,265:1 | +T | 7.5% | intergenic (‑34/+19) | ygiV ← / ← ygiW | transcriptional repressor for mcbR biofilm gene/hydrogen peroxide and cadmium resistance periplasmic protein; stress‑induced OB‑fold protein |
| RA | 3,171,852 | C→T | 12.2% | intergenic (+19/+27) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,857 | A→T | 13.8% | intergenic (+24/+22) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,858 | A→T | 13.8% | intergenic (+25/+21) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,171,863 | A→G | 13.2% | intergenic (+30/+16) | qseC → / ← ygiZ | quorum sensing sensory histidine kinase in two‑component regulatory system with QseB/inner membrane protein |
| RA | 3,172,796 | T→C | 5.9% | G89G (GGT→GGC) | mdaB → | NADPH quinone reductase |
| RA | 3,175,118 | A→G | 5.1% | R93R (CGT→CGC) | parE ← | DNA topoisomerase IV, subunit B |
| RA | 3,180,505 | G→T | 7.9% | E29* (GAG→TAG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,506 | A→C | 8.1% | E29A (GAG→GCG) ‡ | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,180,513:1 | +A | 5.3% | coding (93/1161 nt) | ygiC → | ATP‑Grasp family ATPase |
| RA | 3,183,345:1 | +T | 20.3% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 20.0% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,186,137 | A→T | 8.9% | intergenic (+47/‑50) | yqiG → / → insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| RA | 3,186,138 | A→T | 8.9% | intergenic (+48/‑49) | yqiG → / → insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| RA | 3,192,129 | T→A | 5.3% | intergenic (‑190/‑79) | glgS ← / → yqiJ | motility and biofilm regulator/DUF1449 family inner membrane protein |
| RA | 3,192,132 | T→A | 5.3% | intergenic (‑193/‑76) | glgS ← / → yqiJ | motility and biofilm regulator/DUF1449 family inner membrane protein |
| RA | 3,202,678 | C→G | 6.1% | P263R (CCG→CGG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,685 | A→G | 5.9% | E265E (GAA→GAG) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,202,686 | C→T | 5.8% | L266F (CTC→TTC) | cca → | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| RA | 3,208,201 | G→A | 6.7% | V60M (GTG→ATG) | ttdT → | L‑tartrate/succinate antiporte |
| RA | 3,208,205 | G→A | 8.9% | G61D (GGT→GAT) | ttdT → | L‑tartrate/succinate antiporte |
| RA | 3,208,210 | T→C | 9.7% | S63P (TCC→CCC) | ttdT → | L‑tartrate/succinate antiporte |
| RA | 3,234,506 | G→A | 16.5% | intergenic (‑51/+233) | higB ← / ← rlmG | mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent |
| RA | 3,234,507 | A→T | 15.6% | intergenic (‑52/+232) | higB ← / ← rlmG | mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent |
| RA | 3,234,508 | T→C | 15.5% | intergenic (‑53/+231) | higB ← / ← rlmG | mRNA interferase toxin of the HigB‑HigA toxin‑antitoxin system/23S rRNA m(2)G1835 methyltransferase, SAM‑dependent |
| RA | 3,238,463 | C→T | 8.1% | intergenic (+166/‑117) | ygjR → / → alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| RA | 3,238,464 | A→C | 8.3% | intergenic (+167/‑116) | ygjR → / → alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| RA | 3,238,465 | G→T | 8.3% | intergenic (+168/‑115) | ygjR → / → alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| RA | 3,238,466 | A→G | 8.5% | intergenic (+169/‑114) | ygjR → / → alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| RA | 3,239,609 | T→G | 12.4% | intergenic (+64/‑335) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,610 | C→G | 13.1% | intergenic (+65/‑334) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,239,611 | C→A | 12.9% | intergenic (+66/‑333) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,250,989 | G→C | 6.3% | intergenic (+35/‑35) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,990 | A→T | 6.3% | intergenic (+36/‑34) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,991 | A→T | 5.9% | intergenic (+37/‑33) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,250,992 | G→C | 6.1% | intergenic (+38/‑32) | yqjF → / → yqjG | putative quinol oxidase subunit/putative S‑transferase |
| RA | 3,256,441 | T→G | 7.6% | T71P (ACG→CCG) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,442 | G→C | 7.5% | G70G (GGC→GGG) ‡ | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,443 | C→A | 7.4% | G70V (GGC→GTC) ‡ | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,256,450 | C→T | 7.3% | V68I (GTT→ATT) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,263,500 | G→A | 6.2% | P54L (CCG→CTG) ‡ | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,263,501 | G→C | 6.2% | P54A (CCG→GCG) ‡ | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,263,502 | T→C | 6.4% | A53A (GCA→GCG) | tdcD ← | propionate kinase/acetate kinase C, anaerobic |
| RA | 3,271,825 | T→A | 5.6% | intergenic (‑55/+42) | garK ← / ← garR | glycerate kinase I/tartronate semialdehyde reductase |
| RA | 3,282,927 | A→G | 7.0% | I318V (ATC→GTC) ‡ | agaS → | tagatose‑6‑phosphate ketose/aldose isomerase |
| RA | 3,282,928 | T→A | 7.2% | I318N (ATC→AAC) ‡ | agaS → | tagatose‑6‑phosphate ketose/aldose isomerase |
| RA | 3,282,929 | C→T | 7.2% | I318I (ATC→ATT) ‡ | agaS → | tagatose‑6‑phosphate ketose/aldose isomerase |
| RA | 3,288,032 | C→A | 25.9% | intergenic (+22/‑58) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,288,033 | T→G | 25.9% | intergenic (+23/‑57) | yraH → / → yraI | putative fimbrial‑like adhesin protein/putative periplasmic pilin chaperone |
| RA | 3,291,109 | A→T | 5.1% | K766* (AAA→TAA) ‡ | yraJ → | putative outer membrane protein |
| RA | 3,291,110 | A→T | 5.1% | K766I (AAA→ATA) ‡ | yraJ → | putative outer membrane protein |
| RA | 3,309,004 | C→T | 8.9% | intergenic (‑80/+29) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,309,009 | C→T | 8.6% | intergenic (‑85/+24) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,309,012 | A→G | 11.4% | intergenic (‑88/+21) | nlpI ← / ← pnp | lipoprotein involved in osmotic sensitivity and filamentation/polynucleotide phosphorylase/polyadenylase |
| RA | 3,313,207 | G→A | 40.0% | intergenic (‑29/+135) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,313,208 | T→A | 50.0% | intergenic (‑30/+134) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,313,209 | T→C | 50.0% | intergenic (‑31/+133) | rbfA ← / ← infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| RA | 3,314,870 | T→A | 6.4% | D382V (GAC→GTC) | infB ← | translation initiation factor IF‑2 |
| RA | 3,314,876 | T→G | 6.1% | D380A (GAC→GCC) ‡ | infB ← | translation initiation factor IF‑2 |
| RA | 3,314,877 | C→T | 6.1% | D380N (GAC→AAC) ‡ | infB ← | translation initiation factor IF‑2 |
| RA | 3,322,698 | A→G | 7.0% | intergenic (‑193/+35) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,700 | A→G | 6.9% | intergenic (‑195/+33) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,703 | C→T | 7.0% | intergenic (‑198/+30) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,322,705 | C→T | 6.9% | intergenic (‑200/+28) | secG ← / ← glmM | preprotein translocase membrane subunit/phosphoglucosamine mutase |
| RA | 3,324,952 | A→G | 11.6% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 11.5% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 11.5% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,959 | C→T | 11.4% | intergenic (‑48/+42) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,328,182 | A→T | 24.0% | intergenic (+99/+57) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,183 | T→A | 24.0% | intergenic (+100/+56) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,328,184 | A→T | 23.1% | intergenic (+101/+55) | yhbY → / ← greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| RA | 3,332,822 | G→A | 25.0% | intergenic (‑87/+40) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,332,823 | T→C | 25.0% | intergenic (‑88/+39) | yhbE ← / ← rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| RA | 3,333,057 | C→T | 6.7% | L21L (CTG→CTA) ‡ | rpmA ← | 50S ribosomal subunit protein L27 |
| RA | 3,333,058 | A→G | 6.9% | L21P (CTG→CCG) ‡ | rpmA ← | 50S ribosomal subunit protein L27 |
| RA | 3,333,065 | T→A | 7.4% | K19* (AAA→TAA) | rpmA ← | 50S ribosomal subunit protein L27 |
| RA | 3,334,703 | A→G | 6.6% | intergenic (+22/‑206) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,704 | G→C | 6.3% | intergenic (+23/‑205) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,705 | C→T | 6.6% | intergenic (+24/‑204) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,334,705:1 | +T | 6.7% | intergenic (+24/‑204) | ispB → / → sfsB | octaprenyl diphosphate synthase/malPQ operon transcriptional activator |
| RA | 3,350,678 | Δ1 bp | 12.1% | noncoding (102/121 nt) | arcZ → | sRNA positive antisense regulator of rpoS; binds Hfq |
| RA | 3,350,682:1 | +A | 11.7% | noncoding (106/121 nt) | arcZ → | sRNA positive antisense regulator of rpoS; binds Hfq |
| RA | 3,360,643 | T→A | 8.3% | intergenic (+27/‑533) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,360,644 | G→C | 8.9% | intergenic (+28/‑532) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,360,645 | T→A | 8.9% | intergenic (+29/‑531) | gltD → / → gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein |
| RA | 3,368,982 | G→C | 13.8% | intergenic (+28/+32) | yhcG → / ← yhcH | DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily/DUF386 family protein, cupin superfamily |
| RA | 3,377,768 | C→T | 22.7% | intergenic (‑348/+47) | sspA ← / ← rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| RA | 3,377,769 | G→T | 22.7% | intergenic (‑349/+46) | sspA ← / ← rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| RA | 3,377,770 | A→C | 20.9% | intergenic (‑350/+45) | sspA ← / ← rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| RA | 3,377,771 | A→G | 20.8% | intergenic (‑351/+44) | sspA ← / ← rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| RA | 3,378,284 | T→G | 11.2% | K123T (AAA→ACA) ‡ | rplM ← | 50S ribosomal subunit protein L13 |
| RA | 3,378,285 | T→A | 11.1% | K123* (AAA→TAA) ‡ | rplM ← | 50S ribosomal subunit protein L13 |
| RA | 3,378,286 | C→A | 10.6% | L122L (CTG→CTT) | rplM ← | 50S ribosomal subunit protein L13 |
| RA | 3,387,553 | T→A | 5.1% | R212R (CGA→CGT) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,390,512 | A→G | 5.8% | intergenic (+63/+71) | aaeR → / ← tldD | transcriptional regulator for aaeXAB operon/putative peptidase |
| RA | 3,399,899 | A→T | 5.1% | I27N (ATT→AAT) | mreC ← | cell wall structural complex MreBCD transmembrane component MreC |
| RA | 3,399,902 | A→T | 5.1% | I26N (ATT→AAT) | mreC ← | cell wall structural complex MreBCD transmembrane component MreC |
| RA | 3,399,905 | A→T | 5.1% | I25N (ATT→AAT) | mreC ← | cell wall structural complex MreBCD transmembrane component MreC |
| RA | 3,400,846 | A→T | 5.4% | I81N (ATC→AAC) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,400,849 | A→T | 5.3% | V80D (GTT→GAT) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,401,582 | A→T | 5.2% | L584Q (CTG→CAG) | csrD ← | targeting factor for csrBC sRNA degradation |
| RA | 3,418,620 | G→A | 6.3% | intergenic (+9/‑422) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,418,628 | G→A | 11.6% | intergenic (+17/‑414) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,418,629 | T→C | 11.7% | intergenic (+18/‑413) | yhdV → / → yhdW | putative outer membrane protein/pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic‑binding component of ABC superfamily |
| RA | 3,423,383 | A→G | 23.5% | intergenic (+189/+40) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,423,398 | C→T | 10.8% | intergenic (+204/+25) | yhdZ → / ← rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| RA | 3,439,588 | G→C | 26.3% | intergenic (‑79/+28) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,439,589 | G→C | 23.8% | intergenic (‑80/+27) | yhdN ← / ← rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| RA | 3,441,060 | T→C | 10.6% | K206E (AAG→GAG) | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,441,061 | G→C | 10.1% | S205S (TCC→TCG) ‡ | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,441,062 | G→A | 10.2% | S205F (TCC→TTC) ‡ | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,471,357 | C→T | 6.5% | intergenic (‑28/+43) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,361 | T→G | 7.2% | intergenic (‑32/+39) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,362 | C→A | 7.5% | intergenic (‑33/+38) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,366 | A→G | 8.2% | intergenic (‑37/+34) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,477,878 | T→A | 21.7% | intergenic (+20/+29) | slyX → / ← slyD | phi X174 lysis protein/FKBP‑type peptidyl prolyl cis‑trans isomerase (rotamase) |
| RA | 3,486,217 | A→C | 6.0% | Q33P (CAG→CCG) ‡ | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,486,218 | G→T | 6.2% | Q33H (CAG→CAT) ‡ | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,486,225 | A→T | 5.9% | K36* (AAA→TAA) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,486,771 | T→C | 5.5% | intergenic (+19/‑20) | crp → / → yhfK | cAMP‑activated global transcription factor, mediator of catabolite repression/putative transporter, FUSC superfamily inner membrane protein |
| RA | 3,486,776 | T→A | 7.0% | intergenic (+24/‑15) | crp → / → yhfK | cAMP‑activated global transcription factor, mediator of catabolite repression/putative transporter, FUSC superfamily inner membrane protein |
| RA | 3,505,785 | A→T | 7.0% | I79N (ATT→AAT) | yhfS ← | FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| RA | 3,522,778 | C→G | 5.4% | intergenic (‑27/‑93) | hofM ← / → mrcA | DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| RA | 3,522,779 | T→A | 5.4% | intergenic (‑28/‑92) | hofM ← / → mrcA | DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| RA | 3,522,780 | C→G | 5.4% | intergenic (‑29/‑91) | hofM ← / → mrcA | DNA catabolic putative pilus assembly protein/penicillin‑binding protein 1a, murein transglycosylase and transpeptidase |
| RA | 3,525,424 | T→C | 15.4% | intergenic (+1/+165) | mrcA → / ← nudE | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase/adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase |
| RA | 3,533,037 | C→A | 6.1% | R74S (CGT→AGT) ‡ | pck → | phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,533,038 | G→C | 6.2% | R74P (CGT→CCT) ‡ | pck → | phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,533,039 | T→G | 6.1% | R74R (CGT→CGG) ‡ | pck → | phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,539,815 | A→T | 11.1% | intergenic (+109/‑348) | yhgF → / → feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A |
| RA | 3,539,816 | T→A | 10.5% | intergenic (+110/‑347) | yhgF → / → feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A |
| RA | 3,539,817 | A→T | 10.5% | intergenic (+111/‑346) | yhgF → / → feoA | putative transcriptional accessory protein/ferrous iron transporter, protein A |
| RA | 3,544,689 | A→T | 5.2% | R52R (CGT→CGA) | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,561,969 | A→T | 8.4% | intergenic (‑146/‑44) | glpE ← / → glpD | thiosulfate:cyanide sulfurtransferase (rhodanese)/sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| RA | 3,561,972 | A→T | 8.4% | intergenic (‑149/‑41) | glpE ← / → glpD | thiosulfate:cyanide sulfurtransferase (rhodanese)/sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| RA | 3,563,539 | T→C | 11.7% | intergenic (+21/+248) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,563,546 | T→G | 12.1% | intergenic (+28/+241) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,563,547 | C→A | 12.2% | intergenic (+29/+240) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,563,554 | G→A | 6.3% | intergenic (+36/+233) | glpD → / ← yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| RA | 3,566,212 | C→G | 5.9% | G124R (GGT→CGT) | glgP ← | glycogen phosphorylase |
| RA | 3,566,215 | T→A | 6.5% | N123Y (AAC→TAC) | glgP ← | glycogen phosphorylase |
| RA | 3,566,218 | C→G | 5.6% | G122R (GGT→CGT) | glgP ← | glycogen phosphorylase |
| RA | 3,566,220 | A→T | 5.6% | L121H (CTC→CAC) | glgP ← | glycogen phosphorylase |
| RA | 3,569,431 | A→G | 5.3% | I630T (ATT→ACT) | glgX ← | glycogen debranching enzyme |
| RA | 3,569,436 | G→A | 5.1% | H628H (CAC→CAT) ‡ | glgX ← | glycogen debranching enzyme |
| RA | 3,569,437 | T→C | 5.1% | H628R (CAC→CGC) ‡ | glgX ← | glycogen debranching enzyme |
| RA | 3,601,824 | G→C | 7.1% | P88R (CCC→CGC) ‡ | ftsX ← | putative ABC transporter permease |
| RA | 3,601,825 | G→C | 7.1% | P88A (CCC→GCC) ‡ | ftsX ← | putative ABC transporter permease |
| RA | 3,614,830 | G→A | 5.4% | Q388Q (CAG→CAA) | nikA → | nickel/heme ABC transporter periplasmic binding protein |
| RA | 3,614,831 | A→T | 5.3% | I389F (ATT→TTT) ‡ | nikA → | nickel/heme ABC transporter periplasmic binding protein |
| RA | 3,614,832 | T→C | 5.3% | I389T (ATT→ACT) ‡ | nikA → | nickel/heme ABC transporter periplasmic binding protein |
| RA | 3,629,503 | G→A | 5.1% | V12V (GTC→GTT) | rbbA ← | ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein |
| RA | 3,630,661 | A→T | 6.9% | intergenic (‑59/+307) | yhiI ← / ← yhiJ | putative membrane fusion protein (MFP) of efflux pump/DUF4049 family protein |
| RA | 3,630,667 | A→G | 6.7% | intergenic (‑65/+301) | yhiI ← / ← yhiJ | putative membrane fusion protein (MFP) of efflux pump/DUF4049 family protein |
| RA | 3,636,747 | T→C | 5.3% | T222A (ACC→GCC) | yhiN ← | putative oxidoreductase |
| RA | 3,636,748 | G→A | 5.3% | G221G (GGC→GGT) | yhiN ← | putative oxidoreductase |
| RA | 3,639,223 | G→T | 5.9% | intergenic (+82/+162) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,639,224 | A→C | 6.5% | intergenic (+83/+161) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,639,230 | T→G | 7.3% | intergenic (+89/+155) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,639,231 | T→C | 7.3% | intergenic (+90/+154) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,639,338 | T→C | 6.3% | intergenic (+197/+47) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,642,358 | T→A | 23.5% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,642,361 | T→A | 22.2% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,657,599 | T→A | 20.2% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 19.8% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 22.4% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,668,181 | C→T | 7.5% | T336T (ACG→ACA) ‡ | yhjA ← | putative cytochrome C peroxidase |
| RA | 3,668,183 | T→A | 7.5% | T336S (ACG→TCG) ‡ | yhjA ← | putative cytochrome C peroxidase |
| RA | 3,668,185 | A→G | 7.3% | L335P (CTG→CCG) | yhjA ← | putative cytochrome C peroxidase |
| RA | 3,701,840 | A→G | 9.1% | intergenic (+6/+24) | yhjV → / ← dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| RA | 3,701,843 | Δ1 bp | 8.8% | intergenic (+9/+21) | yhjV → / ← dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| RA | 3,701,847:1 | +C | 8.8% | intergenic (+13/+17) | yhjV → / ← dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| RA | 3,701,850 | C→T | 8.8% | intergenic (+16/+14) | yhjV → / ← dppF | putative transporter/dipeptide/heme ABC transporter ATPas |
| RA | 3,702,835 | G→A | 6.1% | L12L (CTG→TTG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,837 | G→C | 6.0% | P11R (CCG→CGG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,839 | T→C | 6.4% | Q10Q (CAA→CAG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,705,949 | T→C | 5.9% | intergenic (‑159/+149) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,952 | G→A | 6.3% | intergenic (‑162/+146) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,984 | T→G | 7.3% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,705,985 | T→C | 7.3% | intergenic (‑195/+113) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| RA | 3,714,163:1 | +T | 6.7% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 6.5% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,729,405 | C→G | 7.6% | intergenic (‑34/+38) | xylB ← / ← xylA | xylulokinase/D‑xylose isomerase |
| RA | 3,729,408 | C→G | 7.6% | intergenic (‑37/+35) | xylB ← / ← xylA | xylulokinase/D‑xylose isomerase |
| RA | 3,729,413 | Δ1 bp | 6.5% | intergenic (‑42/+30) | xylB ← / ← xylA | xylulokinase/D‑xylose isomerase |
| RA | 3,736,322 | G→T | 10.2% | intergenic (+165/+31) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| RA | 3,736,323 | A→G | 10.4% | intergenic (+166/+30) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| RA | 3,736,324 | C→T | 10.0% | intergenic (+167/+29) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| RA | 3,736,325 | A→C | 9.9% | intergenic (+168/+28) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| RA | 3,747,168:1 | +C | 7.0% | coding (85/1497 nt) | lyxK → | L‑xylulose kinase |
| RA | 3,747,173 | Δ1 bp | 7.1% | coding (90/1497 nt) | lyxK → | L‑xylulose kinase |
| RA | 3,749,465 | T→A | 5.0% | R78R (CGT→CGA) | sgbU → | putative L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 3,754,874 | G→A | 5.5% | intergenic (‑446/+99) | yiaW ← / ← aldB | DUF3302 family inner membrane protein/aldehyde dehydrogenase B |
| RA | 3,754,875 | T→C | 5.4% | intergenic (‑447/+98) | yiaW ← / ← aldB | DUF3302 family inner membrane protein/aldehyde dehydrogenase B |
| RA | 3,774,207 | C→T | 10.3% | intergenic (+13/‑217) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,214 | C→T | 11.5% | intergenic (+20/‑210) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,215 | A→G | 11.9% | intergenic (+21/‑209) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,774,222 | A→G | 11.8% | intergenic (+28/‑202) | mtlA → / → mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| RA | 3,778,876 | G→A | 9.5% | G493D (GGC→GAC) | lldP → | L‑lactate permease |
| RA | 3,778,879 | T→C | 9.2% | V494A (GTC→GCC) | lldP → | L‑lactate permease |
| RA | 3,781,051 | C→G | 15.2% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,790,300 | A→T | 16.3% | intergenic (‑219/+20) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,790,303 | A→T | 15.7% | intergenic (‑222/+17) | waaH ← / ← tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| RA | 3,792,765 | C→T | 7.9% | intergenic (‑214/+61) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,792,766 | A→T | 8.2% | intergenic (‑215/+60) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,792,767 | A→T | 8.2% | intergenic (‑216/+59) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,792,768 | A→G | 8.1% | intergenic (‑217/+58) | kbl ← / ← yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| RA | 3,798,234 | A→T | 15.2% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,798,235 | A→T | 15.3% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,810,321 | T→C | 6.2% | intergenic (+17/+22) | coaD → / ← mutM | pantetheine‑phosphate adenylyltransferase/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
| RA | 3,810,324 | G→A | 5.6% | intergenic (+20/+19) | coaD → / ← mutM | pantetheine‑phosphate adenylyltransferase/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
| RA | 3,814,164 | G→A | 10.9% | G78D (GGT→GAT) | dut → | deoxyuridinetriphosphatase |
| RA | 3,814,167 | T→C | 10.9% | I79T (ATC→ACC) | dut → | deoxyuridinetriphosphatase |
| RA | 3,815,816 | C→G | 16.3% | intergenic (‑48/+18) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,815,819 | C→G | 16.3% | intergenic (‑51/+15) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,817,940 | T→A | 6.8% | F61I (TTC→ATC) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,948 | G→T | 6.4% | E63D (GAG→GAT) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,949 | A→C | 6.2% | I64L (ATC→CTC) | dinD → | DNA damage‑inducible protein |
| RA | 3,821,489 | T→A | 5.2% | I21N (ATT→AAT) | gmk → | guanylate kinase |
| RA | 3,831,757 | C→T | 8.0% | A434V (GCC→GTC) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,831,761 | C→G | 7.8% | A435A (GCC→GCG) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,831,764 | C→G | 7.8% | A436A (GCC→GCG) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,831,768 | A→G | 8.1% | T438A (ACA→GCA) | yicH → | putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,832,188 | A→T | 7.5% | intergenic (+22/+31) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,191 | C→G | 6.6% | intergenic (+25/+28) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,832,194 | A→T | 6.9% | intergenic (+28/+25) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,888,212 | Δ1 bp | 14.0% | intergenic (+20/‑223) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,888,219 | T→A | 14.9% | intergenic (+27/‑216) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,891,502 | C→G | 15.5% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 13.3% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 7.6% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,664 | C→G | 5.3% | A17G (GCC→GGC) | mdtL → | multidrug efflux system protein |
| RA | 3,897,613 | G→A | 7.5% | P36P (CCG→CCA) | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,897,614 | C→G | 7.5% | L37V (CTG→GTG) ‡ | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,897,615 | T→C | 7.6% | L37P (CTG→CCG) ‡ | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,900,542 | A→T | 5.5% | I12I (ATT→ATA) | yieL ← | putative xylanase |
| RA | 3,900,545 | A→T | 5.8% | A11A (GCT→GCA) | yieL ← | putative xylanase |
| RA | 3,918,291 | C→T | 7.3% | intergenic (‑26/+25) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,296 | C→T | 8.0% | intergenic (‑31/+20) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,299 | A→G | 7.0% | intergenic (‑34/+17) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,918,304 | A→G | 7.2% | intergenic (‑39/+12) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| RA | 3,923,717 | G→A | 7.3% | intergenic (‑37/+27) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,923,718 | G→C | 7.3% | intergenic (‑38/+26) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,923,719 | G→C | 7.3% | intergenic (‑39/+25) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,923,720 | T→C | 7.9% | intergenic (‑40/+24) | rsmG ← / ← mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,941,557 | G→A | 10.6% | intergenic (‑230/‑251) | yieP ← / → rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
| RA | 3,941,564 | C→A | 10.3% | intergenic (‑237/‑244) | yieP ← / → rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
| RA | 3,941,565 | T→G | 10.5% | intergenic (‑238/‑243) | yieP ← / → rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
| RA | 3,941,891 | T→A | 21.1% | noncoding (84/1542 nt) | rrsC → | 16S ribosomal RNA of rrnC operon |
| RA | 3,941,892 | T→A | 21.1% | noncoding (85/1542 nt) | rrsC → | 16S ribosomal RNA of rrnC operon |
| RA | 3,953,432 | C→T | 6.8% | intergenic (+19/‑46) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,433 | A→G | 6.8% | intergenic (+20/‑45) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,436 | C→T | 6.8% | intergenic (+23/‑42) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,953,437 | A→G | 6.8% | intergenic (+24/‑41) | ilvE → / → ilvD | branched‑chain amino acid aminotransferase/dihydroxyacid dehydratase |
| RA | 3,959,480 | A→T | 18.9% | intergenic (+35/+52) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,481 | C→G | 18.9% | intergenic (+36/+51) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,515 | T→A | 15.6% | intergenic (+70/+17) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,924 | A→T | 6.1% | intergenic (‑111/+88) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,959,925 | A→T | 6.0% | intergenic (‑112/+87) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,959,926 | A→T | 6.1% | intergenic (‑113/+86) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,966,768 | G→T | 7.5% | E118* (GAA→TAA) ‡ | rho → | transcription termination factor |
| RA | 3,966,769 | A→T | 7.9% | E118V (GAA→GTA) ‡ | rho → | transcription termination factor |
| RA | 3,966,770 | A→C | 7.9% | E118D (GAA→GAC) ‡ | rho → | transcription termination factor |
| RA | 3,970,813 | Δ1 bp | 5.4% | coding (681/1131 nt) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| RA | 3,970,817:1 | +G | 5.4% | coding (685/1131 nt) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| RA | 3,971,996 | T→A | 8.0% | L246Q (CTG→CAG) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| RA | 3,972,673 | A→C | 9.0% | E51A (GAG→GCG) ‡ | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 3,972,674 | G→T | 9.1% | E51D (GAG→GAT) ‡ | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 3,974,858 | T→C | 5.4% | V131A (GTG→GCG) | wecD → | TDP‑fucosamine acetyltransferase |
| RA | 3,974,861 | G→A | 5.5% | R132H (CGC→CAC) | wecD → | TDP‑fucosamine acetyltransferase |
| RA | 3,975,281 | A→G | 5.1% | S46G (AGC→GGC) ‡ | wecE → | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| RA | 3,975,282 | G→C | 5.2% | S46T (AGC→ACC) ‡ | wecE → | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| RA | 3,975,283 | C→T | 5.0% | S46S (AGC→AGT) ‡ | wecE → | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| RA | 3,980,726 | G→A | 15.3% | intergenic (+30/‑161) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| RA | 3,980,727 | T→C | 14.5% | intergenic (+31/‑160) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| RA | 3,980,768 | C→A | 7.3% | intergenic (+72/‑119) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| RA | 3,980,772 | T→A | 6.9% | intergenic (+76/‑115) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| RA | 3,980,776 | T→G | 7.0% | intergenic (+80/‑111) | wecG → / → yifK | UDP‑N‑acetyl‑D‑mannosaminuronic acid transferase/putative APC family amino acid transporter |
| RA | 3,981,102 | T→A | 6.6% | V72V (GTT→GTA) | yifK → | putative APC family amino acid transporter |
| RA | 3,991,334 | T→A | 10.3% | I61N (ATT→AAT) ‡ | cyaA → | adenylate cyclase |
| RA | 3,991,335 | T→A | 10.3% | I61I (ATT→ATA) ‡ | cyaA → | adenylate cyclase |
| RA | 3,993,569 | C→T | 100% | P806L (CCG→CTG) | cyaA → | adenylate cyclase |
| RA | 4,015,333 | A→T | 10.7% | intergenic (+19/+21) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,017,216:1 | +A | 14.1% | intergenic (+24/‑117) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,017,222 | Δ1 bp | 13.3% | intergenic (+30/‑111) | udp → / → rmuC | uridine phosphorylase/DNA recombination protein |
| RA | 4,022,007 | C→T | 6.4% | G21G (GGC→GGT) | tatA → | TatABCE protein translocation system subunit |
| RA | 4,022,008 | A→G | 6.4% | T22A (ACC→GCC) | tatA → | TatABCE protein translocation system subunit |
| RA | 4,037,458 | G→A | 31.6% | intergenic (+123/‑61) | alaT → / → rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| RA | 4,041,216 | T→C | 5.2% | Q73R (CAG→CGG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,217 | G→A | 5.3% | Q73* (CAG→TAG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,220 | T→C | 5.3% | S72G (AGC→GGC) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,221 | G→A | 5.3% | A71A (GCC→GCT) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,049,986 | G→T | 18.5% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,049,989 | A→C | 16.1% | noncoding (91/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,051,259 | G→T | 33.3% | noncoding (224/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,051,262 | A→C | 31.3% | noncoding (227/245 nt) | csrC → | CsrC sRNA sequesters CsrA, a carbon flux regulator |
| RA | 4,056,038 | T→G | 6.5% | D101A (GAC→GCC) ‡ | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
| RA | 4,056,039 | C→A | 6.6% | D101Y (GAC→TAC) ‡ | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
| RA | 4,060,261 | G→T | 25.6% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 24.4% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,062,371 | A→T | 7.8% | N42I (AAT→ATT) | yihN → | MFS transporter family protein |
| RA | 4,062,811 | C→A | 5.4% | L189M (CTG→ATG) ‡ | yihN → | MFS transporter family protein |
| RA | 4,062,813 | G→T | 5.3% | L189L (CTG→CTT) ‡ | yihN → | MFS transporter family protein |
| RA | 4,062,814 | A→C | 5.2% | N190H (AAT→CAT) ‡ | yihN → | MFS transporter family protein |
| RA | 4,062,816 | T→G | 5.2% | N190K (AAT→AAG) ‡ | yihN → | MFS transporter family protein |
| RA | 4,070,410 | C→A | 5.4% | intergenic (‑9/+105) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,070,413 | T→G | 5.3% | intergenic (‑12/+102) | yihR ← / ← yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| RA | 4,080,006 | T→C | 6.4% | intergenic (+37/+293) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,080,009 | G→A | 6.7% | intergenic (+40/+290) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,080,027 | G→A | 5.5% | intergenic (+58/+272) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,080,028 | C→A | 5.4% | intergenic (+59/+271) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,080,616 | C→A | 5.8% | G205C (GGC→TGC) | fdhE ← | formate dehydrogenase formation protein |
| RA | 4,080,621 | T→G | 6.8% | Q203P (CAA→CCA) | fdhE ← | formate dehydrogenase formation protein |
| RA | 4,082,696 | G→C | 11.5% | Q22E (CAG→GAG) | fdoH ← | formate dehydrogenase‑O, Fe‑S subunit |
| RA | 4,088,091 | G→C | 26.3% | intergenic (+34/+16) | yiiG → / ← frvR | DUF3829 family lipoprotein/putative frv operon regulator; contains a PTS EIIA domain |
| RA | 4,093,463 | A→G | 6.2% | S270S (AGT→AGC) | rhaD ← | rhamnulose‑1‑phosphate aldolase |
| RA | 4,106,369 | T→G | 6.2% | intergenic (+49/‑100) | cpxP → / → fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter |
| RA | 4,106,370 | G→C | 6.2% | intergenic (+50/‑99) | cpxP → / → fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter |
| RA | 4,106,371 | C→A | 6.2% | intergenic (+51/‑98) | cpxP → / → fieF | inhibitor of the cpx response; periplasmic adaptor protein/ferrous iron and zinc transporter |
| RA | 4,110,717 | A→T | 7.2% | intergenic (+32/+23) | cdh → / ← tpiA | CDP‑diacylglycerol phosphotidylhydrolase/triosephosphate isomerase |
| RA | 4,110,719 | G→C | 7.1% | intergenic (+34/+21) | cdh → / ← tpiA | CDP‑diacylglycerol phosphotidylhydrolase/triosephosphate isomerase |
| RA | 4,110,721 | A→T | 7.6% | intergenic (+36/+19) | cdh → / ← tpiA | CDP‑diacylglycerol phosphotidylhydrolase/triosephosphate isomerase |
| RA | 4,114,536 | C→T | 7.9% | intergenic (‑64/+33) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,537 | G→T | 7.6% | intergenic (‑65/+32) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,538 | A→C | 7.4% | intergenic (‑66/+31) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,114,539 | A→G | 7.5% | intergenic (‑67/+30) | fpr ← / ← glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| RA | 4,117,016 | A→C | 6.9% | D69E (GAT→GAG) | glpK ← | glycerol kinase |
| RA | 4,117,174 | A→C | 93.1% | S17A (TCC→GCC) | glpK ← | glycerol kinase |
| RA | 4,177,171 | T→A | 9.5% | intergenic (+43/‑187) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,177,172 | T→A | 8.7% | intergenic (+44/‑186) | tufB → / → secE | translation elongation factor EF‑Tu 2/preprotein translocase membrane subunit |
| RA | 4,185,907 | G→T | 5.3% | Q186H (CAG→CAT) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,213,131 | C→T | 10.7% | noncoding (92/120 nt) | rrfE → | 5S ribosomal RNA of rrnE operon |
| RA | 4,213,179 | Δ1 bp | 11.8% | intergenic (+20/‑55) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,213,182 | A→T | 12.4% | intergenic (+23/‑52) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,213,185 | A→T | 12.1% | intergenic (+26/‑49) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,213,187:1 | +A | 11.4% | intergenic (+28/‑47) | rrfE → / → yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein |
| RA | 4,225,316 | A→C | 5.5% | K497Q (AAA→CAA) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,225,322 | G→T | 6.0% | E499* (GAG→TAG) ‡ | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,225,323 | A→C | 6.0% | E499A (GAG→GCG) ‡ | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,225,329 | G→T | 6.1% | C501F (TGC→TTC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,227,550 | G→A | 9.5% | intergenic (+39/‑181) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,227,555 | A→T | 10.3% | intergenic (+44/‑176) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,227,560 | T→C | 9.7% | intergenic (+49/‑171) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,229,433:1 | +G | 5.7% | intergenic (+71/+20) | yjbB → / ← pepE | putative Na+/Pi‑cotransporter/peptidase E, alpha‑aspartyl dipeptidase |
| RA | 4,229,438 | Δ1 bp | 5.5% | intergenic (+76/+15) | yjbB → / ← pepE | putative Na+/Pi‑cotransporter/peptidase E, alpha‑aspartyl dipeptidase |
| RA | 4,235,579 | G→A | 15.4% | intergenic (+172/‑327) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| RA | 4,235,581 | T→A | 16.7% | intergenic (+174/‑325) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| RA | 4,235,583 | T→C | 16.7% | intergenic (+176/‑323) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| RA | 4,235,757 | G→T | 16.0% | intergenic (+350/‑149) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| RA | 4,235,758 | A→C | 16.0% | intergenic (+351/‑148) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| RA | 4,241,715 | G→T | 6.8% | C180* (TGC→TGA) ‡ | xylE ← | D‑xylose transporter |
| RA | 4,241,716 | C→G | 6.9% | C180S (TGC→TCC) ‡ | xylE ← | D‑xylose transporter |
| RA | 4,241,717 | A→C | 6.7% | C180G (TGC→GGC) ‡ | xylE ← | D‑xylose transporter |
| RA | 4,245,108 | T→G | 9.0% | intergenic (‑33/+121) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,110 | T→G | 9.0% | intergenic (‑35/+119) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,111 | C→A | 9.0% | intergenic (‑36/+118) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,113 | C→A | 9.0% | intergenic (‑38/+116) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,261,358 | T→A | 11.3% | intergenic (+52/‑311) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,359 | T→A | 11.3% | intergenic (+53/‑310) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,261,368 | T→C | 6.9% | intergenic (+62/‑301) | yjbM → / → dusA | uncharacterized protein/tRNA‑dihydrouridine synthase A |
| RA | 4,262,250 | G→C | 5.7% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,255 | G→C | 5.7% | S196T (AGC→ACC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,270,142 | G→A | 10.9% | intergenic (+15/‑96) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,270,144 | G→C | 11.1% | intergenic (+17/‑94) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,270,146 | T→C | 11.4% | intergenic (+19/‑92) | aphA → / → yjbQ | acid phosphatase/phosphotransferase, class B, non‑specific/thiamine phosphate synthase |
| RA | 4,274,740 | G→A | 10.2% | intergenic (+79/+20) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,742 | T→A | 10.0% | intergenic (+81/+18) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,274,744 | T→C | 10.8% | intergenic (+83/+16) | ssb → / ← yjcB | single‑stranded DNA‑binding protein/putative inner membrane protein |
| RA | 4,281,677 | T→A | 6.4% | intergenic (+48/+106) | yjcE → / ← yjcF | putative cation/proton antiporter/pentapeptide repeats protein |
| RA | 4,281,678 | C→A | 6.4% | intergenic (+49/+105) | yjcE → / ← yjcF | putative cation/proton antiporter/pentapeptide repeats protein |
| RA | 4,281,679 | T→G | 7.5% | intergenic (+50/+104) | yjcE → / ← yjcF | putative cation/proton antiporter/pentapeptide repeats protein |
| RA | 4,281,680 | T→A | 7.5% | intergenic (+51/+103) | yjcE → / ← yjcF | putative cation/proton antiporter/pentapeptide repeats protein |
| RA | 4,285,866 | Δ1 bp | 6.3% | coding (1506/1959 nt) | acs ← | acetyl‑CoA synthetase |
| RA | 4,285,870:1 | +G | 6.3% | coding (1502/1959 nt) | acs ← | acetyl‑CoA synthetase |
| RA | 4,291,512 | G→A | 10.6% | M1M (GTG→ATG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,291,513 | T→C | 10.6% | M1A (GTG→GCG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,296,060 | C→T | 15.0% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,299,056 | T→C | 5.0% | Q104R (CAG→CGG) | fdhF ← | formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,299,062 | G→C | 5.3% | A102G (GCC→GGC) | fdhF ← | formate dehydrogenase‑H, selenopolypeptide subunit |
| RA | 4,307,294 | A→T | 12.7% | L169Q (CTG→CAG) | alsK ← | D‑allose kinase |
| RA | 4,307,298 | G→A | 14.2% | P168S (CCC→TCC) | alsK ← | D‑allose kinase |
| RA | 4,314,227 | A→T | 12.4% | intergenic (+30/+117) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,314,233 | A→T | 14.1% | intergenic (+36/+111) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,315,437 | A→T | 5.7% | F34L (TTT→TTA) ‡ | phnO ← | aminoalkylphosphonate N‑acetyltransferase |
| RA | 4,315,438 | A→T | 5.7% | F34Y (TTT→TAT) ‡ | phnO ← | aminoalkylphosphonate N‑acetyltransferase |
| RA | 4,315,439 | A→T | 5.7% | F34I (TTT→ATT) ‡ | phnO ← | aminoalkylphosphonate N‑acetyltransferase |
| RA | 4,315,808 | T→C | 13.1% | D92G (GAC→GGC) | phnN ← | ribose 1,5‑bisphosphokinase |
| RA | 4,315,811 | A→G | 11.9% | F91S (TTC→TCC) | phnN ← | ribose 1,5‑bisphosphokinase |
| RA | 4,315,814 | C→T | 12.6% | G90E (GGA→GAA) | phnN ← | ribose 1,5‑bisphosphokinase |
| RA | 4,315,817 | G→A | 12.5% | A89V (GCC→GTC) | phnN ← | ribose 1,5‑bisphosphokinase |
| RA | 4,315,823 | A→T | 7.0% | L87Q (CTG→CAG) | phnN ← | ribose 1,5‑bisphosphokinase |
| RA | 4,317,509 | G→C | 6.1% | A129A (GCC→GCG) | phnL ← | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase |
| RA | 4,317,513 | T→A | 5.9% | K128I (AAA→ATA) ‡ | phnL ← | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase |
| RA | 4,317,514 | T→A | 5.9% | K128* (AAA→TAA) ‡ | phnL ← | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase |
| RA | 4,317,518 | G→C | 6.8% | A126A (GCC→GCG) | phnL ← | ribophosphonate triphosphate synthase subunit; putative ABC transporter‑related ATPase |
| RA | 4,323,312 | G→C | 5.6% | intergenic (‑82/+24) | phnE ← / ← phnD | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily/phosphonate ABC transporter periplasmic binding protein |
| RA | 4,323,313 | G→C | 5.6% | intergenic (‑83/+23) | phnE ← / ← phnD | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily/phosphonate ABC transporter periplasmic binding protein |
| RA | 4,332,868 | G→T | 10.1% | R135R (CGC→CGA) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,332,871 | A→C | 9.3% | S134R (AGT→AGG) | basS ← | sensory histidine kinase in two‑component regulatory system with BasR |
| RA | 4,336,974 | A→T | 9.0% | S20T (TCG→ACG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,979 | A→C | 9.0% | M18R (ATG→AGG) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,981 | C→G | 8.9% | L17L (CTG→CTC) ‡ | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,983 | G→T | 8.9% | L17M (CTG→ATG) ‡ | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,988 | A→T | 9.2% | V15D (GTC→GAC) | adiC ← | arginine:agmatine antiporter |
| RA | 4,336,995 | T→A | 6.8% | I13F (ATC→TTC) | adiC ← | arginine:agmatine antiporter |
| RA | 4,339,802 | A→G | 7.4% | A240A (GCT→GCC) | adiA ← | arginine decarboxylase |
| RA | 4,339,805 | C→T | 7.5% | Q239Q (CAG→CAA) | adiA ← | arginine decarboxylase |
| RA | 4,353,170 | G→A | 10.3% | intergenic (+89/+30) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,171 | C→G | 11.2% | intergenic (+90/+29) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,172 | C→G | 10.8% | intergenic (+91/+28) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,353,173 | T→C | 10.8% | intergenic (+92/+27) | ghoT → / ← lysU | toxin of GhoTS toxin‑antitoxin pair; membrane‑lytic protein; stimulator of persister cell formation/lysine tRNA synthetase, inducible |
| RA | 4,356,445 | A→T | 30.0% | intergenic (‑34/+25) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,356,446 | A→T | 30.0% | intergenic (‑35/+24) | dtpC ← / ← cadA | dipeptide and tripeptide permease/lysine decarboxylase, acid‑inducible |
| RA | 4,362,528 | G→A | 18.6% | intergenic (‑175/+23) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,362,529 | T→C | 18.2% | intergenic (‑176/+22) | yjdQ ← / ← pheU | pseudogene, P4‑like integrase remnant/tRNA‑Phe |
| RA | 4,365,452 | G→T | 11.4% | intergenic (‑96/+20) | cutA ← / ← dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| RA | 4,365,453 | A→C | 12.5% | intergenic (‑97/+19) | cutA ← / ← dcuA | divalent‑cation tolerance protein, copper sensitivity/C4‑dicarboxylate antiporter |
| RA | 4,366,854 | T→G | 26.3% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 27.8% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,367,700 | G→T | 7.8% | L210M (CTG→ATG) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,367,701 | G→C | 7.7% | I209M (ATC→ATG) ‡ | aspA ← | aspartate ammonia‑lyase |
| RA | 4,367,702 | A→C | 7.6% | I209S (ATC→AGC) ‡ | aspA ← | aspartate ammonia‑lyase |
| RA | 4,376,291 | T→C | 6.0% | intergenic (+26/‑26) | efp → / → ecnA | polyproline‑specific translation elongation factor EF‑P/entericidin A membrane lipoprotein, antidote entericidin B |
| RA | 4,376,622 | A→G | 5.4% | T24A (ACC→GCC) | ecnB → | entericidin B membrane lipoprotein |
| RA | 4,376,633 | C→T | 5.7% | G27G (GGC→GGT) | ecnB → | entericidin B membrane lipoprotein |
| RA | 4,377,791 | A→T | 9.5% | intergenic (‑69/+20) | blc ← / ← ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| RA | 4,377,792 | A→T | 9.5% | intergenic (‑70/+19) | blc ← / ← ampC | outer membrane lipoprotein cell division and growth lipocalin/penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| RA | 4,381,389 | G→T | 5.6% | G310G (GGC→GGA) | frdA ← | anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
| RA | 4,381,396 | G→C | 6.8% | P308R (CCG→CGG) | frdA ← | anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
| RA | 4,381,403 | A→C | 5.8% | S306A (TCC→GCC) | frdA ← | anaerobic fumarate reductase catalytic and NAD/flavoprotein subunit |
| RA | 4,392,617 | C→G | 10.7% | noncoding (35/76 nt) | glyY → | tRNA‑Gly |
| RA | 4,395,454 | T→C | 5.9% | C463C (TGT→TGC) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,395,455 | G→A | 5.8% | A464T (GCA→ACA) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,408,758 | T→C | 6.3% | L702P (CTG→CCG) ‡ | rnr → | exoribonuclease R, RNase R |
| RA | 4,408,759 | G→A | 6.3% | L702L (CTG→CTA) ‡ | rnr → | exoribonuclease R, RNase R |
| RA | 4,409,152 | T→C | 10.0% | intergenic (+57/‑123) | rnr → / → rlmB | exoribonuclease R, RNase R/23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,157 | G→C | 9.8% | intergenic (+62/‑118) | rnr → / → rlmB | exoribonuclease R, RNase R/23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,160 | G→C | 10.8% | intergenic (+65/‑115) | rnr → / → rlmB | exoribonuclease R, RNase R/23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,165 | G→A | 10.7% | intergenic (+70/‑110) | rnr → / → rlmB | exoribonuclease R, RNase R/23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,402 | Δ1 bp | 15.1% | coding (128/732 nt) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,407 | T→A | 15.9% | S45T (TCT→ACT) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,409,410:1 | +A | 14.4% | coding (136/732 nt) | rlmB → | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent |
| RA | 4,410,026 | G→A | 11.0% | intergenic (+20/‑107) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,410,034 | G→A | 21.5% | intergenic (+28/‑99) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,410,037 | T→C | 21.5% | intergenic (+31/‑96) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,422,895 | C→G | 7.0% | A17G (GCC→GGC) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,422,903 | T→C | 6.9% | C20R (TGC→CGC) | ulaE → | L‑xylulose 5‑phosphate 3‑epimerase |
| RA | 4,439,845 | T→A | 10.1% | intergenic (+52/+27) | ytfK → / ← ytfL | DUF1107 family protein/UPF0053 family inner membrane protein |
| RA | 4,444,191 | G→T | 5.9% | G27V (GGC→GTC) ‡ | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,444,192 | C→G | 5.5% | G27G (GGC→GGG) ‡ | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,444,193 | A→C | 5.6% | T28P (ACC→CCC) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,450,955 | A→G | 8.3% | intergenic (+37/‑103) | ytfQ → / → ytfR | galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase |
| RA | 4,450,956 | A→C | 8.6% | intergenic (+38/‑102) | ytfQ → / → ytfR | galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase |
| RA | 4,450,962 | T→G | 8.5% | intergenic (+44/‑96) | ytfQ → / → ytfR | galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase |
| RA | 4,450,963 | C→A | 8.3% | intergenic (+45/‑95) | ytfQ → / → ytfR | galactofuranose ABC transporter periplasmic binding protein/putative sugar ABC transporter ATPase |
| RA | 4,470,951 | A→C | 26.2% | intergenic (‑38/+35) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,952 | T→C | 23.9% | intergenic (‑39/+34) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,957 | G→A | 24.6% | intergenic (‑44/+29) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,470,958 | G→T | 24.6% | intergenic (‑45/+28) | ridA ← / ← pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| RA | 4,479,012 | A→T | 22.9% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 22.3% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 22.3% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,496,511 | A→G | 5.5% | intergenic (+22/‑164) | leuX → / → intB | tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| RA | 4,496,512 | C→T | 5.2% | intergenic (+23/‑163) | leuX → / → intB | tRNA‑Leu/pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| RA | 4,512,350:1 | +G | 7.5% | coding (65/957 nt) | fecD ← | ferric citrate ABC transporter permease |
| RA | 4,515,968 | C→G | 5.9% | G237A (GGA→GCA) | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,515,972 | A→T | 6.2% | Y236N (TAC→AAC) | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,515,976 | C→G | 5.9% | V234V (GTG→GTC) | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,520,500 | Δ1 bp | 51.4% | intergenic (‑176/+171) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,520,504:1 | +T | 47.5% | intergenic (‑180/+167) | yjhU ← / ← yjhF | putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element/putative transporter |
| RA | 4,532,534 | G→C | 8.1% | A217G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,532,537 | G→C | 8.1% | A216G (GCC→GGC) | yjhP ← | putative methyltransferase |
| RA | 4,541,545 | C→G | 5.9% | H197D (CAC→GAC) | fimB → | tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,548,400 | G→A | 6.6% | C39Y (TGT→TAT) ‡ | fimG → | minor component of type 1 fimbriae |
| RA | 4,548,401 | T→C | 6.6% | C39C (TGT→TGC) ‡ | fimG → | minor component of type 1 fimbriae |
| RA | 4,548,914 | G→C | 6.2% | G36A (GGT→GCT) | fimH → | minor component of type 1 fimbriae |
| RA | 4,548,917 | G→C | 6.4% | G37A (GGC→GCC) | fimH → | minor component of type 1 fimbriae |
| RA | 4,548,920 | G→C | 6.6% | S38T (AGC→ACC) | fimH → | minor component of type 1 fimbriae |
| RA | 4,549,932 | T→A | 8.9% | intergenic (+222/+21) | fimH → / ← gntP | minor component of type 1 fimbriae/fructuronate transporter |
| RA | 4,551,422 | T→A | 11.2% | intergenic (‑126/‑214) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| RA | 4,552,182 | G→C | 5.1% | G183R (GGC→CGC) | uxuA → | mannonate hydrolase |
| RA | 4,552,185 | G→C | 5.2% | A184P (GCG→CCG) | uxuA → | mannonate hydrolase |
| RA | 4,557,660 | A→G | 5.1% | I210I (ATT→ATC) | hypT ← | hypochlorite‑responsive transcription factor |
| RA | 4,557,663 | C→T | 5.1% | L209L (TTG→TTA) | hypT ← | hypochlorite‑responsive transcription factor |
| RA | 4,565,341 | A→G | 5.0% | I170I (ATT→ATC) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
| RA | 4,565,345 | G→C | 5.3% | A169G (GCC→GGC) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
| RA | 4,565,349 | C→T | 5.2% | D168N (GAT→AAT) | yjiM ← | putative 2‑hydroxyglutaryl‑CoA dehydratase |
| RA | 4,606,113 | G→T | 5.3% | noncoding (53/87 nt) | leuV ← | tRNA‑Leu |
| RA | 4,606,116 | A→C | 5.1% | noncoding (50/87 nt) | leuV ← | tRNA‑Leu |
| RA | 4,610,720 | T→A | 6.2% | L436Q (CTG→CAG) | prfC → | peptide chain release factor RF‑3 |
| RA | 4,632,723 | G→A | 5.2% | intergenic (+53/‑37) | slt → / → trpR | lytic murein transglycosylase, soluble/transcriptional repressor, tryptophan‑binding |
| RA | 4,633,149 | G→T | 5.2% | intergenic (+63/+84) | trpR → / ← yjjX | transcriptional repressor, tryptophan‑binding/non‑canonical purine NTP phosphatase, ITPase/XTPase |
| RA | 4,633,150 | A→C | 5.4% | intergenic (+64/+83) | trpR → / ← yjjX | transcriptional repressor, tryptophan‑binding/non‑canonical purine NTP phosphatase, ITPase/XTPase |
| RA | 4,633,156 | T→G | 5.4% | intergenic (+70/+77) | trpR → / ← yjjX | transcriptional repressor, tryptophan‑binding/non‑canonical purine NTP phosphatase, ITPase/XTPase |
| RA | 4,633,157 | T→C | 5.4% | intergenic (+71/+76) | trpR → / ← yjjX | transcriptional repressor, tryptophan‑binding/non‑canonical purine NTP phosphatase, ITPase/XTPase |
| RA | 4,638,690 | C→T | 9.1% | G171G (GGC→GGT) | creD → | inner membrane protein |
| RA | 4,638,691 | A→G | 9.1% | T172A (ACC→GCC) | creD → | inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423769–3424234 | 3424532–3424238 | 5–764 | 33 [32] | [32] 33 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 4304486 | 4304633 | 148 | 33 [31] | [32] 34 | [yjcS] | [yjcS] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15633 | NA (NA) | 2 (0.020) | 4/216 | NT | NA | noncoding (247/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 15641 | NA (NA) | noncoding (255/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | = 16653 | NA (NA) | 4 (0.030) | 4/212 | NT | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 22430 = | 111 (0.800) | 6 (0.050) | 4/214 | NT | 5.2% | coding (40/2817 nt) | ileS | isoleucyl‑tRNA synthetase |
| ? | NC_000913 | 22469 = | 113 (0.860) | coding (79/2817 nt) | ileS | isoleucyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 81840 | 121 (0.880) | 7 (0.050) | 6/216 | NT | 5.6% | coding (119/1092 nt) | leuB | 3‑isopropylmalate dehydrogenase, NAD(+)‑dependent |
| ? | NC_000913 | = 81876 | 119 (0.900) | coding (83/1092 nt) | leuB | 3‑isopropylmalate dehydrogenase, NAD(+)‑dependent | |||||
| * | ? | NC_000913 | 103901 = | 146 (1.060) | 7 (0.050) | 7/214 | NT | 5.2% | coding (747/831 nt) | ftsQ | divisome assembly protein, membrane anchored protein involved in growth of wall at septum |
| ? | NC_000913 | 103941 = | 117 (0.900) | coding (787/831 nt) | ftsQ | divisome assembly protein, membrane anchored protein involved in growth of wall at septum | |||||
| * | ? | NC_000913 | = 127781 | 73 (0.530) | 4 (0.030) | 4/216 | NT | 6.0% | intergenic (+194/‑131) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
| ? | NC_000913 | = 127854 | 55 (0.420) | intergenic (+267/‑58) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase | |||||
| * | ? | NC_000913 | = 148710 | 117 (0.850) | 7 (0.050) | 6/218 | NT | 5.8% | coding (86/852 nt) | panC | pantothenate synthetase |
| ? | NC_000913 | = 148737 | 113 (0.850) | coding (59/852 nt) | panC | pantothenate synthetase | |||||
| * | ? | NC_000913 | = 183661 | 90 (0.650) | 11 (0.090) | 11/206 | NT | 10.6% | intergenic (+41/+48) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| ? | NC_000913 | = 183674 | 104 (0.830) | intergenic (+54/+35) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein | |||||
| * | ? | NC_000913 | 209596 = | 114 (0.830) | 6 (0.050) | 6/210 | NT | 5.8% | intergenic (+16/‑83) | accA/ldcC | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive |
| ? | NC_000913 | 209624 = | 88 (0.690) | intergenic (+44/‑55) | accA/ldcC | acetyl‑CoA carboxylase, carboxytransferase, alpha subunit/lysine decarboxylase 2, constitutive | |||||
| * | ? | NC_000913 | = 224065 | NA (NA) | 28 (0.220) | 13/212 | NT | NA | noncoding (295/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 224074 | NA (NA) | noncoding (304/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 225078 = | NA (NA) | 23 (0.180) | 15/212 | NT | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 225998 | NA (NA) | 6 (0.050) | 6/218 | NT | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 226704 = | NA (NA) | 6 (0.050) | 5/218 | NT | NA | noncoding (946/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 226730 = | NA (NA) | noncoding (972/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 35 (0.260) | 17/218 | NT | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274038 = | NA (NA) | 5 (0.040) | 5/214 | NT | NA | noncoding (1112/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274083 = | NA (NA) | noncoding (1067/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 3 (0.020) | 3/212 | NT | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 7 (0.060) | 5/208 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 285854 = | 93 (0.670) | 8 (0.060) | 8/216 | NT | 8.6% | coding (460/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter |
| ? | NC_000913 | 285894 = | 81 (0.610) | coding (500/1383 nt) | yagG | CP4‑6 prophage; putative sugar transporter | |||||
| * | ? | NC_000913 | 302552 = | 119 (0.860) | 8 (0.060) | 5/216 | NT | 6.8% | coding (22/690 nt) | paoA | PaoABC aldehyde oxidoreductase, 2Fe‑2S subunit |
| ? | NC_000913 | 302577 = | 107 (0.810) | intergenic (‑4/‑414) | paoA/yagU | PaoABC aldehyde oxidoreductase, 2Fe‑2S subunit/DUF1440 family inner membrane acid resistance protein | |||||
| * | ? | NC_000913 | = 309276 | 130 (0.940) | 9 (0.070) | 6/218 | NT | 6.5% | coding (57/2526 nt) | ecpC | ECP production outer membrane protein |
| ? | NC_000913 | = 309298 | 132 (0.990) | coding (35/2526 nt) | ecpC | ECP production outer membrane protein | |||||
| * | ? | NC_000913 | = 315572 | NA (NA) | 7 (0.060) | 7/206 | NT | NA | noncoding (344/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315588 | NA (NA) | noncoding (360/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 315642 = | NA (NA) | 8 (0.060) | 7/216 | NT | NA | noncoding (414/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315671 = | NA (NA) | noncoding (443/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315852 | NA (NA) | 16 (0.120) | 12/218 | NT | NA | noncoding (624/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315875 | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 341210 | 73 (0.530) | 6 (0.050) | 6/216 | NT | 7.3% | coding (86/1383 nt) | yahJ | putative metallo‑dependent hydrolase domain deaminase |
| ? | NC_000913 | = 341232 | 83 (0.630) | coding (108/1383 nt) | yahJ | putative metallo‑dependent hydrolase domain deaminase | |||||
| * | ? | NC_000913 | = 349845 | 53 (0.410) | 6 (0.050) | 4/212 | NT | 10.2% | noncoding (241/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | = 349969 | NA (NA) | noncoding (365/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | 382282 = | NA (NA) | 5 (0.040) | 5/214 | NT | NA | noncoding (1023/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 382313 = | NA (NA) | noncoding (1054/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 404794 | 64 (0.460) | 4 (0.030) | 4/208 | NT | 6.1% | coding (1092/1116 nt) | yaiC | diguanylate cyclase, cellulose regualtor |
| ? | NC_000913 | = 404817 | 65 (0.510) | coding (1115/1116 nt) | yaiC | diguanylate cyclase, cellulose regualtor | |||||
| * | ? | NC_000913 | 411213 = | 49 (0.380) | 10 (0.080) | 7/212 | NT | 16.9% | noncoding (136/191 nt) | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 4295835 = | NA (NA) | noncoding (1/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 430688 = | 118 (0.850) | 9 (0.070) | 9/218 | NT | 7.2% | coding (84/348 nt) | yajD | HNH nuclease family protein |
| ? | NC_000913 | 430703 = | 119 (0.890) | coding (99/348 nt) | yajD | HNH nuclease family protein | |||||
| * | ? | NC_000913 | = 432541 | 145 (1.050) | 10 (0.080) | 9/214 | NT | 6.5% | coding (311/540 nt) | yajI | putative lipoprotein |
| ? | NC_000913 | = 432555 | 151 (1.160) | coding (297/540 nt) | yajI | putative lipoprotein | |||||
| * | ? | NC_000913 | 479778 = | 107 (0.780) | 6 (0.050) | 6/214 | NT | 5.7% | coding (141/552 nt) | maa | maltose O‑acetyltransferase |
| ? | NC_000913 | 479805 = | 96 (0.730) | coding (114/552 nt) | maa | maltose O‑acetyltransferase | |||||
| * | ? | NC_000913 | 497841 = | 101 (0.730) | 7 (0.050) | 6/216 | NT | 7.1% | intergenic (+22/‑214) | adk/hemH | adenylate kinase/ferrochelatase |
| ? | NC_000913 | 497861 = | 86 (0.650) | intergenic (+42/‑194) | adk/hemH | adenylate kinase/ferrochelatase | |||||
| * | ? | NC_000913 | = 543183 | NA (NA) | 9 (0.070) | 9/212 | NT | NA | noncoding (97/97 nt) | RIP50 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP50 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4373222 = | NA (NA) | noncoding (26/99 nt) | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 549079 | 192 (1.390) | 12 (0.090) | 10/216 | NT | 6.2% | coding (723/1260 nt) | ylbE | NO‑induced DUF1116 protein |
| ? | NC_000913 | = 549108 | 182 (1.380) | coding (752/1260 nt) | ylbE | NO‑induced DUF1116 protein | |||||
| * | ? | NC_000913 | 580753 = | 45 (0.330) | 6 (0.050) | 5/194 | NT | 15.5% | intergenic (‑308/‑81) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | 580810 = | 27 (0.230) | intergenic (‑365/‑24) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein | |||||
| * | ? | NC_000913 | = 609415 | 151 (1.090) | 11 (0.090) | 11/210 | NT | 7.1% | intergenic (+238/+44) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
| ? | NC_000913 | = 609431 | 147 (1.150) | intergenic (+254/+28) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | 624576 = | 147 (1.060) | 4 (0.040) +26 bp |
4/174 | NT | 5.6% | intergenic (‑66/‑309) | fepB/entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| ? | NC_000913 | 3525419 = | 28 (0.200) | coding (2549/2553 nt) | mrcA | penicillin‑binding protein 1a, murein transglycosylase and transpeptidase | |||||
| * | ? | NC_000913 | = 668251 | 108 (0.780) | 18 (0.140) | 14/208 | NT | 14.8% | coding (465/468 nt) | rlmH | 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent |
| ? | NC_000913 | = 668256 | 108 (0.850) | coding (460/468 nt) | rlmH | 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 717086 = | 165 (1.200) | 8 (0.060) | 7/212 | NT | 5.0% | coding (1180/1320 nt) | potE | putrescine/proton symporter: putrescine/ornithine antiporter |
| ? | NC_000913 | 717119 = | 147 (1.140) | coding (1147/1320 nt) | potE | putrescine/proton symporter: putrescine/ornithine antiporter | |||||
| * | ? | NC_000913 | = 730045 | NA (NA) | 8 (0.060) | 7/216 | NT | NA | coding (463/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 730067 | NA (NA) | coding (485/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 731787 = | 158 (1.140) | 8 (0.060) | 7/214 | NT | 5.2% | coding (2205/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 731804 = | 142 (1.090) | coding (2222/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 745332 | 66 (0.480) | 10 (0.080) | 6/212 | NT | 13.4% | coding (168/735 nt) | ybgL | UPF0271 family protein |
| ? | NC_000913 | = 745368 | 67 (0.520) | coding (204/735 nt) | ybgL | UPF0271 family protein | |||||
| * | ? | NC_000913 | 750165 = | 148 (1.070) | 8 (0.060) | 7/212 | NT | 5.6% | coding (2005/2448 nt) | ybgQ | putative outer membrane protein |
| ? | NC_000913 | 750196 = | 133 (1.030) | coding (1974/2448 nt) | ybgQ | putative outer membrane protein | |||||
| * | ? | NC_000913 | = 751116 | 112 (0.810) | 9 (0.070) | 6/216 | NT | 7.6% | coding (1054/2448 nt) | ybgQ | putative outer membrane protein |
| ? | NC_000913 | = 751127 | 112 (0.850) | coding (1043/2448 nt) | ybgQ | putative outer membrane protein | |||||
| * | ? | NC_000913 | 762803 = | NA (NA) | 6 (0.050) +CTACG |
6/216 | NT | 18.3% | noncoding (42/167 nt) | REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 3708527 = | 28 (0.200) | intergenic (‑822/+89) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro | |||||
| * | ? | NC_000913 | = 790867 | 62 (0.450) | 4 (0.030) | 4/204 | NT | 7.1% | coding (163/1047 nt) | galT | galactose‑1‑phosphate uridylyltransferase |
| ? | NC_000913 | = 790886 | 49 (0.390) | coding (144/1047 nt) | galT | galactose‑1‑phosphate uridylyltransferase | |||||
| * | ? | NC_000913 | 841218 = | 77 (0.560) | 4 (0.030) | 4/212 | NT | 5.2% | coding (314/2283 nt) | fiu | catecholate siderophore receptor |
| ? | NC_000913 | 841247 = | 75 (0.580) | coding (285/2283 nt) | fiu | catecholate siderophore receptor | |||||
| * | ? | NC_000913 | = 982946 | 107 (0.780) | 11 (0.080) | 10/214 | NT | 9.5% | intergenic (+52/‑129) | ldtD/ycbK | murein L,D‑transpeptidase/M15A protease‑related family periplasmic protein |
| ? | NC_000913 | = 982957 | 108 (0.830) | intergenic (+63/‑118) | ldtD/ycbK | murein L,D‑transpeptidase/M15A protease‑related family periplasmic protein | |||||
| * | ? | NC_000913 | 1021683 = | 152 (1.100) | 16 (0.120) | 11/216 | NT | 10.3% | coding (546/630 nt) | sxy | CRP‑S‑dependent promoter expression factor |
| ? | NC_000913 | 1021709 = | 132 (1.000) | coding (572/630 nt) | sxy | CRP‑S‑dependent promoter expression factor | |||||
| * | ? | NC_000913 | = 1044089 | 79 (0.570) | 8 (0.060) | 8/206 | NT | 9.8% | coding (122/2181 nt) | etk | tyrosine‑protein kinase, role in O‑antigen capsule formation |
| ? | NC_000913 | = 1044098 | 75 (0.600) | coding (113/2181 nt) | etk | tyrosine‑protein kinase, role in O‑antigen capsule formation | |||||
| * | ? | NC_000913 | 1096961 = | 70 (0.510) | 8 (0.100) +47 bp |
7/132 | NT | 16.5% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097243 = | NA (NA) | intergenic (+414/+322) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1100121 = | 199 (1.440) | 10 (0.080) | 8/218 | NT | 5.1% | coding (482/555 nt) | ycdY | redox enzyme maturation protein (REMP) chaperone for YcdX |
| ? | NC_000913 | 1100158 = | 177 (1.330) | coding (519/555 nt) | ycdY | redox enzyme maturation protein (REMP) chaperone for YcdX | |||||
| * | ? | NC_000913 | = 1110897 | 106 (0.770) | 6 (0.050) | 5/210 | NT | 5.3% | coding (35/2544 nt) | opgH | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist |
| ? | NC_000913 | = 1110918 | 114 (0.890) | coding (56/2544 nt) | opgH | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist | |||||
| * | ? | NC_000913 | 1111254 = | 133 (0.960) | 8 (0.060) | 8/220 | NT | 5.7% | coding (392/2544 nt) | opgH | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist |
| ? | NC_000913 | 1111280 = | 135 (1.000) | coding (418/2544 nt) | opgH | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist | |||||
| * | ? | NC_000913 | 1121419 = | 81 (0.590) | 8 (0.060) | 5/214 | NT | 9.5% | coding (69/246 nt) | dinI | DNA damage‑inducible protein I |
| ? | NC_000913 | 1121450 = | 75 (0.570) | coding (38/246 nt) | dinI | DNA damage‑inducible protein I | |||||
| * | ? | NC_000913 | = 1137859 | 111 (0.800) | 10 (0.080) | 10/216 | NT | 8.3% | coding (489/942 nt) | flgJ | flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase |
| ? | NC_000913 | = 1137875 | 116 (0.880) | coding (505/942 nt) | flgJ | flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase | |||||
| * | ? | NC_000913 | 1207790 = | 63 (0.460) | 79 (0.670) | 62/194 | NT | 65.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 28 (0.240) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 65 (0.470) | 51 (0.430) | 35/194 | NT | 54.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 28 (0.240) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1254732 | 145 (1.050) | 12 (0.090) | 9/210 | NT | 8.0% | coding (1221/2868 nt) | ycgV | putative adhesin |
| ? | NC_000913 | = 1254742 | 142 (1.110) | coding (1211/2868 nt) | ycgV | putative adhesin | |||||
| * | ? | NC_000913 | = 1259097 | 59 (0.430) | 17 (0.140) | 14/204 | NT | 22.5% | intergenic (+28/+27) | ychH/dauA | DUF2583 family putative inner membrane protein/C4‑dicarboxylic acid transporter |
| ? | NC_000913 | = 1259103 | 64 (0.510) | intergenic (+34/+21) | ychH/dauA | DUF2583 family putative inner membrane protein/C4‑dicarboxylic acid transporter | |||||
| * | ? | NC_000913 | = 1293022 | 6 (0.040) | 113 (0.820) | 80/226 | NT | 95.0% | intergenic (‑100/‑505) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | 4518472 = | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 59 (0.440) | 49/218 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1359194 = | 112 (0.810) | 8 (0.060) | 8/220 | NT | 6.8% | intergenic (‑7/+296) | puuP/puuA | putrescine importer/glutamate‑‑putrescine ligase |
| ? | NC_000913 | 1359263 = | 112 (0.830) | intergenic (‑76/+227) | puuP/puuA | putrescine importer/glutamate‑‑putrescine ligase | |||||
| * | ? | NC_000913 | = 1365866 | 46 (0.330) | 6 (0.050) | 6/210 | NT | 10.8% | coding (317/1266 nt) | puuE | 4‑aminobutyrate aminotransferase, PLP‑dependent |
| ? | NC_000913 | = 1365894 | 56 (0.440) | coding (345/1266 nt) | puuE | 4‑aminobutyrate aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913 | = 1420816 | 102 (0.740) | 13 (0.100) | 12/212 | NT | 11.6% | coding (133/423 nt) | ydaT | Rac prophage; uncharacterized protein |
| ? | NC_000913 | = 1420823 | 102 (0.790) | coding (140/423 nt) | ydaT | Rac prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 1463456 | 89 (0.640) | 8 (0.060) | 7/204 | NT | 8.2% | intergenic (+18/‑83) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer |
| ? | NC_000913 | = 1463468 | 100 (0.800) | intergenic (+30/‑71) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer | |||||
| * | ? | NC_000913 | 1516656 = | 107 (0.780) | 10 (0.080) | 7/212 | NT | 8.6% | coding (1079/1425 nt) | patD | gamma‑aminobutyraldehyde dehydrogenase |
| ? | NC_000913 | 1516683 = | 113 (0.870) | coding (1106/1425 nt) | patD | gamma‑aminobutyraldehyde dehydrogenase | |||||
| * | ? | NC_000913 | = 1537933 | 103 (0.750) | 7 (0.060) | 7/206 | NT | 6.0% | coding (921/1545 nt) | narY | nitrate reductase 2 (NRZ), beta subunit |
| ? | NC_000913 | = 1537949 | 125 (0.990) | coding (905/1545 nt) | narY | nitrate reductase 2 (NRZ), beta subunit | |||||
| * | ? | NC_000913 | = 1552327 | NA (NA) | 4 (0.030) | 4/212 | NT | NA | noncoding (79/97 nt) | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 3774243 = | NA (NA) | noncoding (8/99 nt) | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 1648259 | 96 (0.700) | 11 (0.090) | 7/212 | NT | 10.8% | coding (326/408 nt) | dicA | Qin prophage; putative regulator for DicB |
| ? | NC_000913 | = 1648265 | 92 (0.710) | coding (332/408 nt) | dicA | Qin prophage; putative regulator for DicB | |||||
| * | ? | NC_000913 | = 1670967 | 53 (0.380) | 8 (0.070) | 7/200 | NT | 14.3% | intergenic (+15/‑409) | ynfM/asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein |
| ? | NC_000913 | = 1670981 | 49 (0.400) | intergenic (+29/‑395) | ynfM/asr | putative arabinose efflux transporter/acid shock‑inducible periplasmic protein | |||||
| * | ? | NC_000913 | 1813391 = | 85 (0.620) | 14 (0.110) | 11/212 | NT | 14.9% | intergenic (‑259/+30) | ydjO/cedA | uncharacterized protein/cell division modulator |
| ? | NC_000913 | 1813410 = | 80 (0.620) | intergenic (‑278/+11) | ydjO/cedA | uncharacterized protein/cell division modulator | |||||
| * | ? | NC_000913 | = 1816343 | NA (NA) | 6 (0.040) | 4/220 | NT | NA | noncoding (159/189 nt) | RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | = 1816373 | NA (NA) | noncoding (189/189 nt) | RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 1817837 = | 127 (0.920) | 10 (0.080) | 9/218 | NT | 7.6% | coding (664/1353 nt) | chbF | phospho‑chitobiase; general 6‑phospho‑beta‑glucosidase activity |
| ? | NC_000913 | 1817861 = | 119 (0.890) | coding (640/1353 nt) | chbF | phospho‑chitobiase; general 6‑phospho‑beta‑glucosidase activity | |||||
| * | ? | NC_000913 | 1896460 = | 104 (0.750) | 8 (0.060) | 8/216 | NT | 7.9% | coding (291/579 nt) | nudL | putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase |
| ? | NC_000913 | 1896486 = | 86 (0.650) | coding (317/579 nt) | nudL | putative CoA pyrophosphohydrolase, weak 3‑phosphohydroxypyruvate phosphatase | |||||
| * | ? | NC_000913 | 1914480 = | 101 (0.730) | 6 (0.050) | 6/212 | NT | 6.2% | coding (337/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 |
| ? | NC_000913 | 1914531 = | 86 (0.660) | coding (286/2049 nt) | prc | carboxy‑terminal protease for penicillin‑binding protein 3 | |||||
| * | ? | NC_000913 | 1920012 = | 117 (0.850) | 8 (0.060) | 5/212 | NT | 6.9% | coding (2503/2634 nt) | yebT | MCE domain protein |
| ? | NC_000913 | 1920036 = | 107 (0.830) | coding (2527/2634 nt) | yebT | MCE domain protein | |||||
| * | ? | NC_000913 | 2019537 = | 102 (0.740) | 6 (0.050) | 6/212 | NT | 6.1% | intergenic (+24/‑81) | fliK/fliL | flagellar hook‑length control protein/flagellar biosynthesis protein |
| ? | NC_000913 | 2019571 = | 88 (0.680) | intergenic (+58/‑47) | fliK/fliL | flagellar hook‑length control protein/flagellar biosynthesis protein | |||||
| * | ? | NC_000913 | 2044714 = | 53 (0.380) | 10 (0.080) | 10/212 | NT | 19.3% | intergenic (+90/‑224) | asnT/yeeJ | tRNA‑Asn/putative adhesin |
| ? | NC_000913 | 2044741 = | 34 (0.260) | intergenic (+117/‑197) | asnT/yeeJ | tRNA‑Asn/putative adhesin | |||||
| * | ? | NC_000913 | = 2059931 | 106 (0.770) | 6 (0.040) +A |
4/224 | NT | 8.1% | intergenic (+5/+33) | asnU/cbl | tRNA‑Asn/ssuEADCB/tauABCD operon transcriptional activator |
| ? | NC_000913 | = 2062369 | 31 (0.220) | intergenic (+34/+22) | asnV/ldtA | tRNA‑Asn/L,D‑transpeptidase linking Lpp to murein | |||||
| * | ? | NC_000913 | 2080418 = | 132 (0.960) | 7 (0.050) | 7/216 | NT | 5.1% | coding (174/1059 nt) | yeeA | putative transporter, FUSC family inner membrane protein |
| ? | NC_000913 | 2080454 = | 134 (1.020) | coding (138/1059 nt) | yeeA | putative transporter, FUSC family inner membrane protein | |||||
| * | ? | NC_000913 | 2172892 = | 67 (0.490) | 8 (0.060) | 6/212 | NT | 12.0% | intergenic (‑19/+29) | gatD/gatC | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| ? | NC_000913 | 2172911 = | 54 (0.420) | intergenic (‑38/+10) | gatD/gatC | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC | |||||
| * | ? | NC_000913 | 2186606 = | 155 (1.120) | 10 (0.080) | 9/212 | NT | 6.9% | coding (690/825 nt) | rcnA | membrane protein conferring nickel and cobalt resistance |
| ? | NC_000913 | 2186633 = | 123 (0.950) | coding (717/825 nt) | rcnA | membrane protein conferring nickel and cobalt resistance | |||||
| * | ? | NC_000913 | 2263690 = | 86 (0.620) | 6 (0.050) | 6/206 | NT | 8.0% | intergenic (‑195/‑173) | fruB/setB | fused fructose‑specific PTS enzymes: IIA component/HPr component/lactose/glucose efflux system |
| ? | NC_000913 | 2263723 = | 59 (0.470) | intergenic (‑228/‑140) | fruB/setB | fused fructose‑specific PTS enzymes: IIA component/HPr component/lactose/glucose efflux system | |||||
| * | ? | NC_000913 | 2286347 = | 51 (0.370) | 8 (0.060) | 7/210 | NT | 14.2% | intergenic (+60/+43) | proL/yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| ? | NC_000913 | 2286381 = | 49 (0.380) | intergenic (+94/+9) | proL/yejO | tRNA‑Pro/pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system | |||||
| * | ? | NC_000913 | 2336716 = | 75 (0.540) | 6 (0.050) | 5/216 | NT | 8.2% | intergenic (‑72/+77) | yfaA/gyrA | DUF2138 family protein, putative host defense protein/DNA gyrase (type II topoisomerase), subunit A |
| ? | NC_000913 | 2336746 = | 62 (0.470) | intergenic (‑102/+47) | yfaA/gyrA | DUF2138 family protein, putative host defense protein/DNA gyrase (type II topoisomerase), subunit A | |||||
| * | ? | NC_000913 | = 2382550 | 58 (0.420) | 10 (0.080) | 10/210 | NT | 15.1% | intergenic (+25/‑163) | rbn/elaD | RNase BN, tRNA processing enzyme/protease, capable of cleaving an AMC‑ubiquitin model substrate |
| ? | NC_000913 | = 2382557 | 59 (0.460) | intergenic (+32/‑156) | rbn/elaD | RNase BN, tRNA processing enzyme/protease, capable of cleaving an AMC‑ubiquitin model substrate | |||||
| * | ? | NC_000913 | = 2541529 | 110 (0.800) | 6 (0.050) | 5/216 | NT | 5.3% | coding (151/876 nt) | cysW | sulfate/thiosulfate ABC transporter permease |
| ? | NC_000913 | = 2541543 | 109 (0.830) | coding (137/876 nt) | cysW | sulfate/thiosulfate ABC transporter permease | |||||
| * | ? | NC_000913 | 2700550 = | 31 (0.220) | 9 (0.080) | 7/188 | NT | 36.2% | noncoding (31/77 nt) | ohsC | sRNA antisense regulator of shoB toxin |
| ? | NC_000913 | 2700601 = | 6 (0.050) | intergenic (+5/+17) | ohsC/acpS | sRNA antisense regulator of shoB toxin/holo‑[acyl‑carrier‑protein] synthase 1 | |||||
| * | ? | NC_000913 | = 2708671 | 120 (0.870) | 8 (0.060) | 7/212 | NT | 6.6% | coding (84/957 nt) | rseB | anti‑sigma E factor, binds RseA |
| ? | NC_000913 | = 2708691 | 114 (0.880) | coding (64/957 nt) | rseB | anti‑sigma E factor, binds RseA | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 90 (0.690) | 37/214 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 2728214 = | NA (NA) | 26 (0.200) | 15/218 | NT | NA | noncoding (971/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2728240 = | NA (NA) | noncoding (945/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 2729452 | 10 (0.070) | 6 (0.050) | 5/206 | NT | 22.6% | intergenic (‑8/+164) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 4168342 = | 32 (0.250) | intergenic (+142/‑30) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2729475 = | 10 (0.070) | 10 (0.080) | 5/206 | NT | 41.6% | intergenic (‑31/+141) | gltW/rrsG | tRNA‑Glu/16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | = 4168363 | 19 (0.150) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913 | 2775212 = | 97 (0.700) | 6 (0.050) | 6/214 | NT | 6.0% | intergenic (+191/‑333) | yfjW/ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913 | 2775230 = | 97 (0.740) | intergenic (+209/‑315) | yfjW/ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 2775217 | 97 (0.700) | 5 (0.040) | 4/214 | NT | 5.0% | intergenic (+196/‑328) | yfjW/ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913 | = 2775223 | 97 (0.740) | intergenic (+202/‑322) | yfjW/ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 2818349 = | 62 (0.450) | 6 (0.050) | 6/210 | NT | 8.5% | intergenic (‑75/+124) | argY/argV | tRNA‑Arg/tRNA‑Arg |
| ? | NC_000913 | 2818411 = | 72 (0.560) | intergenic (‑137/+62) | argY/argV | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | NC_000913 | 2849188 = | 70 (0.510) | 7 (0.050) | 7/212 | NT | 9.2% | coding (54/1827 nt) | hycC | hydrogenase 3, membrane subunit |
| ? | NC_000913 | 2849218 = | 73 (0.560) | coding (24/1827 nt) | hycC | hydrogenase 3, membrane subunit | |||||
| * | ? | NC_000913 | 2887529 = | 52 (0.380) | 6 (0.050) | 5/212 | NT | 12.0% | intergenic (+120/+49) | sokX/cysH | sok‑related sRNA, function unknown/phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent |
| ? | NC_000913 | 2887561 = | 39 (0.300) | intergenic (+152/+17) | sokX/cysH | sok‑related sRNA, function unknown/phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent | |||||
| * | ? | NC_000913 | 2888334 = | NA (NA) | 7 (0.050) | 7/212 | NT | NA | noncoding (1/37 nt) | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2888367 = | NA (NA) | noncoding (34/37 nt) | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 2925373 | 131 (0.950) | 15 (0.110) | 12/214 | NT | 10.5% | coding (26/849 nt) | queF | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) |
| ? | NC_000913 | = 2925381 | 131 (1.000) | coding (34/849 nt) | queF | 7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent) | |||||
| * | ? | NC_000913 | = 3046087 | 43 (0.310) | 10 (0.080) | 7/216 | NT | 15.5% | intergenic (‑186/+81) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| ? | NC_000913 | 4070475 = | 68 (0.520) | intergenic (‑74/+40) | yihR/yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase | |||||
| * | ? | NC_000913 | 3081301 = | 112 (0.810) | 8 (0.060) | 7/218 | NT | 7.5% | coding (335/1992 nt) | tktA | transketolase 1, thiamine triphosphate‑binding |
| ? | NC_000913 | 3081330 = | 88 (0.660) | coding (306/1992 nt) | tktA | transketolase 1, thiamine triphosphate‑binding | |||||
| * | ? | NC_000913 | 3097338 = | 168 (1.220) | 17 (0.130) | 13/212 | NT | 10.3% | coding (72/1137 nt) | yggW | HemN family putative oxidoreductase |
| ? | NC_000913 | 3097360 = | 140 (1.080) | coding (94/1137 nt) | yggW | HemN family putative oxidoreductase | |||||
| * | ? | NC_000913 | 3123452 = | 68 (0.490) | 8 (0.060) | 7/212 | NT | 11.4% | coding (354/2172 nt) | glcB | malate synthase G |
| ? | NC_000913 | 3123480 = | 61 (0.470) | coding (326/2172 nt) | glcB | malate synthase G | |||||
| * | ? | NC_000913 | = 3131340 | NA (NA) | 5 (0.040) | 5/226 | NT | 5.3% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3138206 = | 89 (0.640) | coding (317/1860 nt) | gss | glutathionylspermidine amidase and glutathionylspermidine synthetase | |||||
| * | ? | NC_000913 | = 3154353 | 92 (0.670) | 6 (0.050) | 5/208 | NT | 6.0% | coding (866/957 nt) | yqhC | transcriptional activator of yqhD |
| ? | NC_000913 | = 3154366 | 103 (0.810) | coding (853/957 nt) | yqhC | transcriptional activator of yqhD | |||||
| * | ? | NC_000913 | = 3177200 | 158 (1.140) | 13 (0.100) | 13/212 | NT | 8.1% | coding (81/423 nt) | yqiB | DUF1249 protein YqiB |
| ? | NC_000913 | = 3177211 | 146 (1.130) | coding (70/423 nt) | yqiB | DUF1249 protein YqiB | |||||
| * | ? | NC_000913 | 3217571 = | 151 (1.090) | 14 (0.110) | 9/212 | NT | 9.3% | coding (1506/1521 nt) | aer | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component |
| ? | NC_000913 | 3217601 = | 130 (1.000) | coding (1476/1521 nt) | aer | fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component | |||||
| * | ? | NC_000913 | 3221823 = | 116 (0.840) | 6 (0.050) | 6/210 | NT | 5.1% | coding (358/984 nt) | ebgR | transcriptional repressor |
| ? | NC_000913 | 3221880 = | 116 (0.910) | coding (415/984 nt) | ebgR | transcriptional repressor | |||||
| * | ? | NC_000913 | = 3235921 | 110 (0.800) | 10 (0.080) | 8/210 | NT | 8.8% | intergenic (‑46/‑39) | rlmG/ygjP | 23S rRNA m(2)G1835 methyltransferase, SAM‑dependent/putative metal dependent hydrolase |
| ? | NC_000913 | = 3235931 | 106 (0.830) | intergenic (‑56/‑29) | rlmG/ygjP | 23S rRNA m(2)G1835 methyltransferase, SAM‑dependent/putative metal dependent hydrolase | |||||
| * | ? | NC_000913 | = 3241202 | 54 (0.390) | 28 (0.220) | 15/210 | NT | 32.3% | coding (543/552 nt) | ygjV | Imp‑YgjV family inner membrane protein |
| ? | NC_000913 | = 3241215 | 67 (0.520) | coding (530/552 nt) | ygjV | Imp‑YgjV family inner membrane protein | |||||
| * | ? | NC_000913 | = 3252144 | NA (NA) | 10 (0.080) | 8/214 | NT | NA | noncoding (80/98 nt) | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3252155 | NA (NA) | noncoding (91/98 nt) | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 3254692 | 93 (0.670) | 6 (0.050) | 6/216 | NT | 6.1% | coding (374/702 nt) | yhaK | redox‑sensitive bicupin |
| ? | NC_000913 | = 3254700 | 96 (0.730) | coding (382/702 nt) | yhaK | redox‑sensitive bicupin | |||||
| * | ? | NC_000913 | = 3277814 | NA (NA) | 4 (0.030) | 4/210 | NT | NA | intergenic (+13/+42) | yhaV/agaR | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system/transcriptional repressor of the aga regulon |
| ? | NC_000913 | = 3277847 | NA (NA) | noncoding (29/29 nt) | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 3289918 = | 94 (0.680) | 15 (0.120) | 9/212 | NT | 15.4% | coding (1105/2517 nt) | yraJ | putative outer membrane protein |
| ? | NC_000913 | 3289945 = | 77 (0.600) | coding (1132/2517 nt) | yraJ | putative outer membrane protein | |||||
| * | ? | NC_000913 | = 3291700 | 201 (1.460) | 14 (0.110) | 5/214 | NT | 6.5% | coding (360/1092 nt) | yraK | putative fimbrial‑like adhesin protein |
| ? | NC_000913 | = 3291705 | 210 (1.610) | coding (365/1092 nt) | yraK | putative fimbrial‑like adhesin protein | |||||
| * | ? | NC_000913 | 3305763 = | 126 (0.910) | 8 (0.060) | 7/216 | NT | 6.3% | coding (55/1245 nt) | mtr | tryptophan transporter of high affinity |
| ? | NC_000913 | 3305791 = | 119 (0.900) | coding (27/1245 nt) | mtr | tryptophan transporter of high affinity | |||||
| * | ? | NC_000913 | = 3349145 | 99 (0.720) | 13 (0.100) | 9/220 | NT | 12.2% | coding (665/729 nt) | mtgA | biosynthetic peptidoglycan transglycosylase |
| ? | NC_000913 | = 3349179 | 90 (0.670) | coding (631/729 nt) | mtgA | biosynthetic peptidoglycan transglycosylase | |||||
| * | ? | NC_000913 | = 3365284 | 149 (1.080) | 12 (0.090) | 11/214 | NT | 7.7% | pseudogene (100/367 nt) | yhcE | pseudogene fragment; interrupted by IS5 |
| ? | NC_000913 | = 3365294 | 146 (1.120) | pseudogene (110/367 nt) | yhcE | pseudogene fragment; interrupted by IS5 | |||||
| * | ? | NC_000913 | 3423376 = | 24 (0.170) | 46 (0.360) +TTGATGT |
15/212 | NT | 62.9% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4213155 | 34 (0.250) | noncoding (116/120 nt) | rrfE | 5S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 3470277 = | NA (NA) | 8 (0.060) | 6/212 | NT | NA | coding (1053/1185 nt) | tufA | translation elongation factor EF‑Tu 1 |
| ? | NC_000913 | 3470311 = | NA (NA) | coding (1019/1185 nt) | tufA | translation elongation factor EF‑Tu 1 | |||||
| * | ? | NC_000913 | 3504888 = | 114 (0.830) | 6 (0.050) | 5/216 | NT | 6.4% | intergenic (+105/+47) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| ? | NC_000913 | = 4070469 | 68 (0.520) | intergenic (‑68/+46) | yihR/yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase | |||||
| * | ? | NC_000913 | = 3510611 | 109 (0.790) | 6 (0.050) | 6/216 | NT | 5.3% | coding (366/1164 nt) | yhfX | putative pyridoxal 5'‑phosphate binding protein |
| ? | NC_000913 | = 3510630 | 112 (0.850) | coding (347/1164 nt) | yhfX | putative pyridoxal 5'‑phosphate binding protein | |||||
| * | ? | NC_000913 | 3521815 = | 102 (0.740) | 5 (0.040) | 5/208 | NT | 5.3% | coding (158/540 nt) | hofN | DNA catabolic putative fimbrial assembly protein |
| ? | NC_000913 | 3521857 = | 86 (0.680) | coding (116/540 nt) | hofN | DNA catabolic putative fimbrial assembly protein | |||||
| * | ? | NC_000913 | 3587430 = | 66 (0.480) | 7 (0.060) | 6/206 | NT | 10.9% | coding (684/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic |
| ? | NC_000913 | 3587464 = | 54 (0.430) | coding (650/744 nt) | ugpQ | glycerophosphodiester phosphodiesterase, cytosolic | |||||
| * | ? | NC_000913 | 3619878 = | NA (NA) | 8 (0.060) | 5/208 | NT | 100% | coding (687/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3619892 = | 0 (0.000) | coding (701/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620057 = | NA (NA) | 34 (0.260) | 18/214 | NT | 100% | coding (866/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620067 = | 0 (0.000) | coding (876/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3620569 = | NA (NA) | 26 (0.200) | 17/214 | NT | 100% | coding (1378/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3620582 = | 0 (0.000) | coding (1391/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 3631094 = | 147 (1.060) | 12 (0.090) | 12/212 | NT | 8.1% | coding (1497/1623 nt) | yhiJ | DUF4049 family protein |
| ? | NC_000913 | 3631118 = | 133 (1.030) | coding (1473/1623 nt) | yhiJ | DUF4049 family protein | |||||
| * | ? | NC_000913 | 3643087 = | 69 (0.500) | 12 (0.090) | 9/210 | NT | 15.6% | coding (46/753 nt) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 3643107 = | 66 (0.510) | coding (26/753 nt) | rsmJ | 16S rRNA m(2)G1516 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 3670807 = | 109 (0.790) | 6 (0.050) | 6/216 | NT | 5.5% | coding (1216/1650 nt) | treF | cytoplasmic trehalase |
| ? | NC_000913 | 3670847 = | 104 (0.790) | coding (1256/1650 nt) | treF | cytoplasmic trehalase | |||||
| * | ? | NC_000913 | 3718303 = | 39 (0.280) | 6 (0.050) | 6/208 | NT | 14.3% | intergenic (+19/+31) | ghrB/yiaF | glyoxylate/hydroxypyruvate reductase B/barrier effect co‑colonization resistance factor; DUF3053 family lipoprotein |
| ? | NC_000913 | 3718328 = | 36 (0.280) | intergenic (+44/+6) | ghrB/yiaF | glyoxylate/hydroxypyruvate reductase B/barrier effect co‑colonization resistance factor; DUF3053 family lipoprotein | |||||
| * | ? | NC_000913 | 3721045 = | 158 (1.140) | 448 (3.270) | 158/224 | NT | 73.3% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 169 (1.240) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | 3727884 = | 166 (1.200) | 21 (0.160) | 16/210 | NT | 11.3% | intergenic (‑136/+33) | yiaB/xylB | YiaAB family inner membrane protein/xylulokinase |
| ? | NC_000913 | 3727914 = | 175 (1.370) | intergenic (‑166/+3) | yiaB/xylB | YiaAB family inner membrane protein/xylulokinase | |||||
| * | ? | NC_000913 | = 3735295 | 432 (3.130) | 31 (0.240) | 17/212 | NT | 6.8% | coding (317/1179 nt) | xylR | xylose divergent operon transcriptional activator |
| ? | NC_000913 | = 3735302 | 451 (3.490) | coding (324/1179 nt) | xylR | xylose divergent operon transcriptional activator | |||||
| * | ? | NC_000913 | = 3736321 | NA (NA) | 23 (0.190) | 21/198 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | = 3736325 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
| * | ? | NC_000913 | 3749443 = | 473 (3.430) | 47 (0.370) | 21/210 | NT | 9.4% | coding (212/861 nt) | sgbU | putative L‑xylulose 5‑phosphate 3‑epimerase |
| ? | NC_000913 | 3749465 = | 463 (3.610) | coding (234/861 nt) | sgbU | putative L‑xylulose 5‑phosphate 3‑epimerase | |||||
| * | ? | NC_000913 | = 3749450 | 490 (3.550) | 32 (0.250) | 17/210 | NT | 6.5% | coding (219/861 nt) | sgbU | putative L‑xylulose 5‑phosphate 3‑epimerase |
| ? | NC_000913 | = 3749456 | 463 (3.610) | coding (225/861 nt) | sgbU | putative L‑xylulose 5‑phosphate 3‑epimerase | |||||
| * | ? | NC_000913 | = 3760171 | 229 (1.660) | 26 (0.200) | 17/214 | NT | 11.2% | coding (1079/1392 nt) | selA | selenocysteine synthase |
| ? | NC_000913 | = 3760184 | 195 (1.490) | coding (1066/1392 nt) | selA | selenocysteine synthase | |||||
| * | ? | NC_000913 | 3811200 = | 164 (1.190) | 21 (0.170) | 15/202 | NT | 15.5% | intergenic (‑48/+50) | mutM/rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 |
| ? | NC_000913 | 3811236 = | 82 (0.670) | intergenic (‑84/+14) | mutM/rpmG | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase/50S ribosomal subunit protein L33 | |||||
| * | ? | NC_000913 | 3892902 = | 188 (1.360) | 9 (0.070) | 6/212 | NT | 5.4% | coding (138/960 nt) | yidZ | putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | 3892929 = | 139 (1.070) | coding (165/960 nt) | yidZ | putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 3895222 = | 31 (0.220) | 10 (0.080) | 5/202 | NT | 29.6% | intergenic (+4/+50) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter |
| ? | NC_000913 | 3895257 = | 20 (0.160) | intergenic (+39/+15) | chrR/adeP | chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter | |||||
| * | ? | NC_000913 | = 3908685 | 138 (1.000) | 11 (0.080) | 9/216 | NT | 7.7% | coding (755/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | = 3908700 | 132 (1.000) | coding (740/891 nt) | pstA | phosphate ABC transporter permease | |||||
| * | ? | NC_000913 | = 3943623 | NA (NA) | 24 (0.170) | 15/226 | NT | 43.6% | intergenic (+113/‑81) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037458 | 31 (0.220) | intergenic (+123/‑61) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 3976188 = | 137 (0.990) | 10 (0.080) | 8/218 | NT | 6.9% | coding (1043/1131 nt) | wecE | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| ? | NC_000913 | 3976210 = | 137 (1.030) | coding (1065/1131 nt) | wecE | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase | |||||
| * | ? | NC_000913 | 3986604 = | 42 (0.300) | 6 (0.050) | 5/204 | NT | 19.1% | noncoding (173/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent |
| ? | NC_000913 | 3986634 = | 13 (0.100) | noncoding (203/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent | |||||
| * | ? | NC_000913 | 4108639 = | 41 (0.300) | 4 (0.030) | 4/212 | NT | 8.9% | noncoding (69/98 nt) | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP302 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4108669 = | 43 (0.330) | intergenic (+155/‑165) | pfkA/sbp | 6‑phosphofructokinase I/sulfate transporter subunit | |||||
| * | ? | NC_000913 | = 4195970 | 118 (0.850) | 6 (0.050) | 5/216 | NT | 5.0% | coding (130/1896 nt) | thiC | phosphomethylpyrimidine synthase |
| ? | NC_000913 | = 4195986 | 114 (0.860) | coding (114/1896 nt) | thiC | phosphomethylpyrimidine synthase | |||||
| * | ? | NC_000913 | 4226588 = | 113 (0.820) | 6 (0.040) | 6/224 | NT | 5.6% | coding (2761/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | NC_000913 | 4226623 = | 92 (0.670) | coding (2796/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||
| * | ? | NC_000913 | 4245162 = | 74 (0.540) | 4 (0.030) | 4/210 | NT | 5.3% | noncoding (71/126 nt) | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 4245191 = | 74 (0.580) | noncoding (100/126 nt) | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | = 4417460 | 157 (1.140) | 15 (0.120) | 11/212 | NT | 8.5% | coding (509/750 nt) | yjfP | acyl CoA esterase |
| ? | NC_000913 | = 4417479 | 176 (1.360) | coding (528/750 nt) | yjfP | acyl CoA esterase | |||||
| * | ? | NC_000913 | = 4511992 | 99 (0.720) | 6 (0.050) | 6/218 | NT | 6.0% | coding (423/957 nt) | fecD | ferric citrate ABC transporter permease |
| ? | NC_000913 | = 4512009 | 92 (0.690) | coding (406/957 nt) | fecD | ferric citrate ABC transporter permease | |||||
| * | ? | NC_000913 | = 4534139 | 198 (1.430) | 15 (0.120) | 13/206 | NT | 7.9% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 171 (1.360) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||
| * | ? | NC_000913 | = 4591667 | 71 (0.510) | 4 (0.030) | 4/214 | NT | 5.5% | coding (11/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| ? | NC_000913 | = 4591703 | 71 (0.540) | coding (47/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor | |||||
| * | ? | NC_000913 | 4611014 = | 69 (0.500) | 6 (0.050) | 6/210 | NT | 8.8% | intergenic (+11/‑382) | prfC/osmY | peptide chain release factor RF‑3/salt‑inducible putative ABC transporter periplasmic binding protein |
| ? | NC_000913 | 4611040 = | 61 (0.480) | intergenic (+37/‑356) | prfC/osmY | peptide chain release factor RF‑3/salt‑inducible putative ABC transporter periplasmic binding protein | |||||