mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 251 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4561547 = | 64 (0.460) | 3 (0.020) | 3/212 | NT | 4.8% | coding (1129/1179 nt) | yjiJ | DUF1228 family putative inner membrane MFS superfamily transporter |
| ? | NC_000913 | 4561612 = | 60 (0.460) | coding (1064/1179 nt) | yjiJ | DUF1228 family putative inner membrane MFS superfamily transporter | |||||
| * | ? | NC_000913 | = 4531319 | 150 (1.090) | 4 (0.030) | 4/220 | NT | 2.8% | coding (333/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain |
| ? | NC_000913 | = 4531360 | 129 (0.960) | coding (292/1122 nt) | sgcX | putative endoglucanase with Zn‑dependent exopeptidase domain | |||||
| * | ? | NC_000913 | = 4530145 | 180 (1.300) | 4 (0.030) | 4/214 | NT | 2.2% | coding (99/1314 nt) | sgcC | putative PTS system EIIC permease component |
| ? | NC_000913 | = 4530173 | 183 (1.400) | coding (71/1314 nt) | sgcC | putative PTS system EIIC permease component | |||||
| * | ? | NC_000913 | = 4497783 | 201 (1.460) | 7 (0.050) | 6/220 | NT | 3.4% | pseudogene (1109/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase |
| ? | NC_000913 | = 4497799 | 197 (1.470) | pseudogene (1125/1266 nt) | intB | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase | |||||
| * | ? | NC_000913 | 4440794 = | 153 (1.110) | 4 (0.030) | 3/210 | NT | 2.7% | coding (422/1344 nt) | ytfL | UPF0053 family inner membrane protein |
| ? | NC_000913 | 4440850 = | 148 (1.150) | coding (366/1344 nt) | ytfL | UPF0053 family inner membrane protein | |||||
| * | ? | NC_000913 | 4389174 = | 123 (0.890) | 4 (0.030) | 4/212 | NT | 3.6% | coding (197/3324 nt) | mscM | mechanosensitive channel protein, miniconductance |
| ? | NC_000913 | 4389211 = | 98 (0.760) | coding (160/3324 nt) | mscM | mechanosensitive channel protein, miniconductance | |||||
| * | ? | NC_000913 | 4379180 = | 111 (0.800) | 4 (0.030) | 4/220 | NT | 3.3% | coding (187/360 nt) | frdD | fumarate reductase (anaerobic), membrane anchor subunit |
| ? | NC_000913 | 4379227 = | 124 (0.920) | coding (140/360 nt) | frdD | fumarate reductase (anaerobic), membrane anchor subunit | |||||
| * | ? | NC_000913 | 4373763 = | 168 (1.220) | 3 (0.020) | 3/218 | NT | 1.8% | coding (472/870 nt) | yjeJ | uncharacterized protein |
| ? | NC_000913 | 4373798 = | 168 (1.260) | coding (437/870 nt) | yjeJ | uncharacterized protein | |||||
| * | ? | NC_000913 | = 4341795 | 61 (0.440) | 3 (0.030) | 3/190 | NT | 5.0% | intergenic (‑167/‑116) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding |
| ? | NC_000913 | = 4341815 | 64 (0.550) | intergenic (‑187/‑96) | melR/melA | melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | = 4262002 | 182 (1.320) | 4 (0.030) | 4/220 | NT | 2.0% | coding (334/1038 nt) | dusA | tRNA‑dihydrouridine synthase A |
| ? | NC_000913 | = 4262033 | 206 (1.530) | coding (365/1038 nt) | dusA | tRNA‑dihydrouridine synthase A | |||||