Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F69 I0 R1 1426 148.0 5875178 97.4% 5722423 123.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,987,450:1 +A 6.8% intergenic (+22/+57) ftnB → / ← yecJ ferritin B, putative ferrous iron reservoir/DUF2766 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,987,4501.A 6.8% 307.9 / 18.5 73intergenic (+22/+57)ftnB/yecJferritin B, putative ferrous iron reservoir/DUF2766 family protein
Reads supporting (aligned to +/- strand):  ref base . (32/36);  new base A (2/3);  total (34/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.77e-01

CAGCATGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTT  >  NC_000913/1987306‑1987562
                                                                                                                                                 |                                                                                                                
cagcaTGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑gcgc                                                                                                              <  1:4548/149‑1 (MQ=255)
 agcaTGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGcc                                                                                                             <  4:201955/149‑1 (MQ=255)
  gcaTGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGC‑AATGCATTAGCGCCg                                                                                                            <  3:1034875/149‑1 (MQ=255)
   caTGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGa                                                                                                           <  4:412218/149‑1 (MQ=255)
   caTGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGa                                                                                                           <  2:140771/149‑1 (MQ=255)
        tgGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAg                                                                                                      <  2:1384752/149‑1 (MQ=255)
         ggTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGC‑AATGCAtta                                                                                                                  <  2:506144/136‑2 (MQ=255)
         ggTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGC‑AATGCAtta                                                                                                                  >  1:506144/1‑135 (MQ=255)
           tNTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGtt                                                                                                   >  3:373888/1‑149 (MQ=255)
             tGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGtttt                                                                                                 <  4:373888/149‑1 (MQ=255)
                     cAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAAcc                                                                                         >  4:177370/1‑149 (MQ=255)
                      aaaCCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCg                                                                                        >  3:804204/1‑149 (MQ=255)
                          cATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGC‑AATGCATTAGCGCCGa                                                                                                           >  4:1309173/1‑126 (MQ=255)
                          cATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGC‑AATGCATTAGCGCCGa                                                                                                           <  3:1309173/126‑1 (MQ=255)
                           aTTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGcc                                                                                   <  3:177370/149‑1 (MQ=255)
                               ttGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCAt                                                                               <  4:804204/149‑1 (MQ=255)
                                 gatgaAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGaa                                                                                                       >  4:593393/1‑123 (MQ=255)
                                 gatgaAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGaa                                                                                                       <  3:593393/123‑1 (MQ=255)
                                 gatgaAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTgag                                                                                              >  1:961813/1‑132 (MQ=255)
                                 gatgaAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGc                                                                                    >  4:308514/1‑142 (MQ=255)
                                 gatgaAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGc                                                                                    <  3:308514/142‑1 (MQ=255)
                                 gatgaAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTCTTgag                                                                                              <  2:961813/132‑1 (MQ=255)
                                  atgaAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTga                                                                                               >  4:678408/1‑130 (MQ=255)
                                  atgaAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTga                                                                                               <  3:678408/130‑1 (MQ=255)
                                   tgaAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGt                                                                           >  3:1456430/1‑149 (MQ=255)
                                     aaGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGttt                                                                         <  4:1456430/149‑1 (MQ=255)
                                          cgcAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCT‑ATGCATT‑GCGCCGa                                                                                                           <  3:627908/109‑1 (MQ=255)
                                          cgcAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCT‑ATGCATT‑GCGCCGa                                                                                                           >  4:627908/1‑109 (MQ=255)
                                               tGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGtt                                                                          >  3:980182/1‑138 (MQ=255)
                                               tGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGAACAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGtt                                                                          <  4:980182/138‑1 (MQ=255)
                                                  gAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACATCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGaa                                                                                                       >  3:851480/1‑106 (MQ=255)
                                                  gAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCAGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGaa                                                                                                       <  4:851480/106‑1 (MQ=255)
                                                       ttGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGC‑AATGCATTAGCGCCGATGa                                                                                                        >  4:756738/1‑100 (MQ=39)
                                                       ttGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGC‑AATGCATTAGCGCCGATGa                                                                                                        <  3:756738/100‑1 (MQ=39)
                                                                 gtgCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAg                                                                                                      >  1:65472/1‑92 (MQ=255)
                                                                 gtgCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAg                                                                                                      <  2:65472/92‑1 (MQ=255)
                                                                    tccTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAAcc                                                                                         >  1:1058302/2‑102 (MQ=255)
                                                                    cccTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAAcc                                                                                         <  2:1058302/102‑1 (MQ=255)
                                                                     ccTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGt                                                              <  1:148525/128‑1 (MQ=255)
                                                                     ccTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGt                                                              >  2:148525/1‑128 (MQ=255)
                                                                         tgCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGtt                                                                          >  2:76858/1‑112 (MQ=255)
                                                                         tgCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGtt                                                                          <  1:76858/112‑1 (MQ=255)
                                                                           cAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCt                                                                             <  2:1142804/107‑1 (MQ=255)
                                                                           cAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCt                                                                             >  1:1142804/1‑107 (MQ=255)
                                                                             gaccgaccAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGC‑AATGCAtta                                                                                                                  >  2:482292/1‑67 (MQ=255)
                                                                             gaccgaccAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGC‑AATGCAtta                                                                                                                  <  1:482292/68‑2 (MQ=255)
                                                                               ccgaccAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGAt                                                                                                          >  2:453803/1‑74 (MQ=255)
                                                                               ccgaccAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGAt                                                                                                          <  1:453803/74‑1 (MQ=255)
                                                                                cgaccAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAagcag                                                                  >  3:707175/1‑113 (MQ=255)
                                                                                cgaccAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAagcag                                                                  <  4:707175/113‑1 (MQ=255)
                                                                                 gaccAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTaa                                                      >  2:160212/1‑124 (MQ=255)
                                                                                 gaccAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTaa                                                      <  1:160212/124‑1 (MQ=255)
                                                                                     aaCATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGttt                                                                                                  <  1:1163725/76‑1 (MQ=255)
                                                                                     aaCATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGttt                                                                                                  >  2:1163725/1‑76 (MQ=255)
                                                                                        aTGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGttttt                                                          <  2:1411749/113‑1 (MQ=255)
                                                                                        aTGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGttttt                                                          >  1:1411749/1‑113 (MQ=255)
                                                                                           ttCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGtt                                                                          >  3:1108253/1‑94 (MQ=255)
                                                                                           ttCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGtt                                                                          <  4:1108253/94‑1 (MQ=255)
                                                                                           ttCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGtttt                                                           <  4:257776/109‑1 (MQ=255)
                                                                                           ttCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGtttt                                                           >  3:257776/1‑109 (MQ=255)
                                                                                                aaTGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTga                                                                                               >  2:838110/1‑68 (MQ=255)
                                                                                                aaTGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTga                                                                                               <  1:838110/68‑1 (MQ=255)
                                                                                                   gTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGttt                                                                         <  1:1136362/87‑1 (MQ=255)
                                                                                                   gTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGttt                                                                         >  2:1136362/1‑87 (MQ=255)
                                                                                                     cGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGtttt                                                           <  2:637068/99‑1 (MQ=255)
                                                                                                     cGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGtttt                                                           >  1:637068/1‑99 (MQ=255)
                                                                                                           acacCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATgg                                                   >  3:93450/1‑101 (MQ=255)
                                                                                                           acacCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATgg                                                   <  4:93450/101‑1 (MQ=255)
                                                                                                           acacCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCAcc                                           >  2:844183/1‑109 (MQ=255)
                                                                                                           acacCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCAcc                                           <  1:844183/109‑1 (MQ=255)
                                                                                                              ccAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTaa                                                      <  2:754911/95‑1 (MQ=255)
                                                                                                              ccAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTaa                                                      >  1:754911/1‑95 (MQ=255)
                                                                                                                           tcatcatcGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGttt                                                            >  3:474820/1‑76 (MQ=255)
                                                                                                                           tcatcatcGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGttt                                                            <  4:474820/76‑1 (MQ=255)
                                                                                                                                         aaTGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCttttt  >  2:24200/1‑120 (MQ=255)
                                                                                                                                         aaTGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCttttt  <  1:24200/120‑1 (MQ=255)
                                                                                                                                           tGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCAc                                            <  2:717500/76‑1 (MQ=255)
                                                                                                                                           tGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCAc                                            >  1:717500/1‑76 (MQ=255)
                                                                                                                                                 |                                                                                                                
CAGCATGATGGTCTGTTGCTGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAATGTCGTGTCACACCAGCTGCATTGATCATCATCGGCGCTAATGCATT‑GCGCCGATGAAGGTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTTTAATGGGATTCACCCTGTGGGGTAAACTTGAGTTCAATAAGCGCGATGGCTTTTT  >  NC_000913/1987306‑1987562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A