Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F69 I0 R1
|
1426 |
148.0 |
5875178 |
97.4% |
5722423 |
123.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,259,686 |
A→G |
7.4% |
intergenic (‑390/+33) |
psuK ← / ← fruA |
pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,259,686 | 0 | A | G | 7.4%
| 296.1
/ 7.1
| 91 | intergenic (‑390/+33) | psuK/fruA | pseudouridine kinase/fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| Reads supporting (aligned to +/- strand): ref base A (43/41); new base G (4/3); total (47/44) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCTGCCCTTGAGGAAATAACCTGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCAATACCGGCGTAATA > NC_000913/2259555‑2259833
|
tCTGCCCTTGAGGAAATAACCTGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTacaggacag > 3:318963/1‑135 (MQ=255)
tCTGCCCTTGAGGAAATAACCTGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTacaggacag < 4:318963/135‑1 (MQ=255)
tCTGCCCTTGAGGAAATAACCTGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCt > 1:23060/1‑149 (MQ=255)
ttGAGGAAATAACCTGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAacac > 1:1257464/1‑149 (MQ=255)
cTGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGaaa > 4:143309/1‑119 (MQ=255)
cTGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGaaa < 3:143309/119‑1 (MQ=255)
tGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTacagga < 2:1109152/111‑1 (MQ=255)
tGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTacagga > 1:1109152/1‑111 (MQ=255)
gtTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCtt > 3:696888/1‑149 (MQ=255)
tttGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCttt > 2:680868/1‑149 (MQ=255)
tttGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTAATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCttt > 4:236855/1‑149 (MQ=255)
tGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGGCAGAAATTTC‑CTGTCCTGTa < 1:1301435/100‑1 (MQ=38)
tGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGGCAGAAATTTC‑CTGTCCTGTa > 2:1123888/1‑100 (MQ=38)
tGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGGCAGAAATTTC‑CTGTCCTGTa > 2:1301435/1‑100 (MQ=38)
tGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGGCA‑GAAATTTCCTGTCCTGTa < 1:1123888/100‑1 (MQ=37)
tGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGc > 4:230063/1‑127 (MQ=255)
tGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGc < 3:230063/127‑1 (MQ=255)
tGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGt > 2:1073108/1‑149 (MQ=255)
aaaGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGttt < 4:696888/149‑1 (MQ=255)
aaGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTc < 2:1257464/149‑1 (MQ=255)
aaaaCCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑Ct < 1:40211/84‑1 (MQ=255)
aaaaCCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑Ct > 2:40211/1‑84 (MQ=255)
aaaaCCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGaa > 1:570946/1‑149 (MQ=255)
aaaCCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAg < 3:236855/149‑1 (MQ=255)
aaaCCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAg < 2:23060/149‑1 (MQ=255)
aaCCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAgg < 1:1073108/149‑1 (MQ=255)
aaCCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTATCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTtta > 3:1341576/1‑102 (MQ=255)
aaCCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTATCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTtta < 4:1341576/102‑1 (MQ=255)
aTTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATa > 3:1241442/1‑149 (MQ=255)
tttAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCa > 1:627492/1‑138 (MQ=255)
tttAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCa < 2:627492/138‑1 (MQ=255)
tttAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAg < 4:1241442/149‑1 (MQ=255)
tAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGc < 2:570946/149‑1 (MQ=255)
aaaTTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGc < 4:936524/142‑1 (MQ=255)
aaaTTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGc > 3:936524/1‑142 (MQ=255)
aaaTTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGc < 2:19767/142‑1 (MQ=255)
aaaTTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGc > 1:19767/1‑142 (MQ=255)
aTTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTc > 2:171365/1‑132 (MQ=255)
aTTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTc < 1:171365/132‑1 (MQ=255)
aTAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGGCA‑GAAAtt < 3:735660/64‑1 (MQ=39)
aTAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGGCA‑GAAAtt > 4:735660/1‑64 (MQ=255)
aTAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAAccc > 4:1142652/1‑149 (MQ=255)
aTAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAAccc > 2:133915/1‑149 (MQ=255)
aTAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAAccc > 3:1159163/1‑149 (MQ=255)
aTAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAAccc > 3:1019157/1‑149 (MQ=255)
tAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCt > 1:798992/1‑72 (MQ=255)
tAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCt < 2:798992/72‑1 (MQ=255)
tAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGTACGTTTCAGGAAGGCATAg < 3:1213646/139‑1 (MQ=255)
tAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAg > 4:1213646/1‑139 (MQ=255)
tAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCg > 4:432303/1‑149 (MQ=255)
aaTTACATTCACAACCCGGTCATACTCTTTGCGCTCATAAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGcca < 4:1019157/149‑1 (MQ=255)
gttCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCg > 4:1351616/2‑149 (MQ=255)
aTTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTGACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCg > 4:848761/1‑149 (MQ=255)
aTTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAg < 3:815075/130‑1 (MQ=255)
aTTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAg > 4:815075/1‑130 (MQ=255)
tCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTa < 1:680868/149‑1 (MQ=255)
cacaAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTAc < 3:1351616/149‑1 (MQ=255)
cacaAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTATCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTAc < 3:432303/149‑1 (MQ=255)
acaAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTAcc > 2:1167127/1‑149 (MQ=255)
acaAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCCTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAg < 3:899201/126‑1 (MQ=255)
acaAACCGGTCATTCTCTTTGCGCTCATAAACTGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAg > 4:899201/1‑126 (MQ=255)
caAACCGGTGATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGGCa > 1:1256258/1‑129 (MQ=255)
caAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCa < 2:1256258/129‑1 (MQ=255)
aaaCCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTc > 4:277459/1‑96 (MQ=255)
aaaCCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTc < 3:277459/96‑1 (MQ=255)
ggTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGc < 1:725827/82‑1 (MQ=255)
ggTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGc > 2:725827/1‑82 (MQ=255)
tCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTTCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCaataat < 1:133915/149‑1 (MQ=255)
tCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCAAAACCCGCCACCAGCGTACCGGCaataat < 3:1142652/149‑1 (MQ=255)
cATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAAtt < 1:1167127/149‑1 (MQ=255)
ttCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGc > 4:755114/1‑149 (MQ=255)
ttCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGc > 1:932014/1‑149 (MQ=255)
tttGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCa < 2:318943/98‑1 (MQ=255)
tttGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCa > 1:318943/1‑98 (MQ=255)
gcTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTaa > 4:857976/1‑149 (MQ=255)
atcaAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTAc > 2:1335869/1‑138 (MQ=255)
atcaAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTAc < 1:1335869/138‑1 (MQ=255)
atcaAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCa > 4:350492/1‑149 (MQ=255)
tcaAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAg < 2:176585/89‑1 (MQ=255)
tcaAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAg > 1:176585/1‑89 (MQ=255)
tcaAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCaa < 1:341248/149‑1 (MQ=255)
tcaAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCaa < 3:579918/149‑1 (MQ=255)
aaaTGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCAATa > 4:34770/1‑149 (MQ=255)
aaTGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGccacca < 1:664406/112‑1 (MQ=255)
aaTGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGccacca > 2:664406/1‑112 (MQ=255)
aTGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCAATAcc < 3:848761/149‑1 (MQ=255)
tGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCAATACCg < 3:755114/149‑1 (MQ=255)
ttACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGaa < 4:238829/85‑1 (MQ=255)
ttACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGaa > 3:238829/1‑85 (MQ=255)
ttACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGcc < 4:1414725/95‑1 (MQ=255)
ttACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGcc > 3:1414725/1‑95 (MQ=255)
ttACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAAccc < 2:540382/101‑1 (MQ=255)
ttACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAAccc > 1:540382/1‑101 (MQ=255)
ttACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCAATACCGGc < 4:1159163/149‑1 (MQ=255)
tACAGGGCA‑GAAATTTCCTGTCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCAATACCGGCg > 2:1452577/1‑149 (MQ=255)
caggacaggaAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGc > 4:782350/1‑124 (MQ=255)
caggacaggaAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGc < 3:782350/124‑1 (MQ=255)
aggacaggaAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCAATACCGGCGTaa > 2:903637/1‑149 (MQ=255)
aggacaggaAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCAATACCGGCGTaa > 2:874167/1‑149 (MQ=255)
gacaggaAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCAATACCGGCGTAATa > 1:935390/1‑149 (MQ=255)
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TCTGCCCTTGAGGAAATAACCTGAGTGTTTGATGAACGTTTGAAGTTTCTACTGAAAGATAAAACCATTTAAATTCATAAAATTACATTCACAAACCGGTCATTCTCTTTGCGCTCATCAAATGTTACAGGACAGGAAATTT‑CTGCCCTGTAACACACCTTTTATTACGCTGCTTTCGCTACTGCGTCCACTTCCGGACGTTTCAGGAAGGCATAGGCCAAACCCGCCACCAGCGTACCGGCAATAATTGCTACCAGGTAACCCAATACCGGCGTAATA > NC_000913/2259555‑2259833
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
