Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F114 I0 R1
|
92 |
803.2 |
28831534 |
98.5% |
28399060 |
140.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
885,311 |
C→T |
10.7% |
intergenic (‑81/+5) |
ybjH ← / ← ybjI |
uncharacterized protein/5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 885,311 | 0 | C | T | 10.7%
| 2071.4
/ 172.2
| 700 | intergenic (‑81/+5) | ybjH/ybjI | uncharacterized protein/5‑amino‑6‑(5‑phospho‑D‑ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis |
| Reads supporting (aligned to +/- strand): ref base C (278/347); new base T (38/37); total (316/384) |
| Fisher's exact test for biased strand distribution p-value = 3.28e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.54e-01 |
Only 100 of 707 total aligned reads displayed.
GCGCCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCATTGCAAAACTAAAGCCTGCCTG > NC_000913/885164‑885459
|
gcgcCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCg < 4:1162648/149‑1 (MQ=255)
gcCATCGCCACACCAGTAAAGCCGATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGt > 2:5587283/1‑149 (MQ=255)
gcCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCCGCCGGt > 1:5125669/1‑149 (MQ=255)
cATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGttt > 3:235326/1‑149 (MQ=255)
cATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGttt < 3:1303852/149‑1 (MQ=255)
tCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTa < 3:6849863/149‑1 (MQ=255)
cGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTAt < 1:1760478/149‑1 (MQ=255)
gCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTAtt < 2:4384524/149‑1 (MQ=255)
gCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTAtt < 1:6692153/149‑1 (MQ=255)
ccACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTg < 4:235326/149‑1 (MQ=255)
ccACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTg < 3:3681818/149‑1 (MQ=255)
cacaCCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTgg < 3:3461452/149‑1 (MQ=255)
acacCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACACTTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGt > 4:2548804/1‑149 (MQ=255)
gCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCt > 4:4958999/1‑149 (MQ=255)
ccccATTAAAAGCGCGCCCAACAATAAACAATTTTTCTTAATCATATCGCCTTAAATAATGCAGCAGGTTATTTTCCGCGAATTATGCAGCCTTCATACAGGCATTGTGTTGCCGAGCGTACTGCTGGGTTTATTGGTCAAATGGCGCt < 2:1764324/148‑1 (MQ=255)
cccATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCTGGTTTTATTGGTCAAATGGCGCtt > 1:4232373/1‑149 (MQ=255)
cccATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCtt > 3:2045194/1‑149 (MQ=255)
ccATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTc > 3:2697986/1‑149 (MQ=255)
ccATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTc > 2:5066093/1‑149 (MQ=255)
aTTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCgt > 4:1870359/1‑149 (MQ=255)
tAAAAGCGCGCCCAACAGTAGACAATTTCTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCgtgt < 1:5286786/149‑1 (MQ=255)
aaaaGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGtt < 4:2843811/149‑1 (MQ=255)
aGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCCTCGTGTTTaa < 3:455454/149‑1 (MQ=255)
aGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTCTTATTGGTCAAATGGCGCTTCGTGTTTaa < 3:4250857/149‑1 (MQ=255)
gcgcgcCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAg > 2:6346522/1‑149 (MQ=255)
gcgcgcCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAg > 1:754088/1‑149 (MQ=255)
gcgcgcCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAg > 2:2749677/1‑149 (MQ=255)
gcCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACt > 1:6335631/1‑149 (MQ=255)
ccAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCaaa > 1:4490778/1‑125 (MQ=255)
ccAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACttt > 1:3758151/1‑149 (MQ=255)
cAACAGTAGACAATTTTTCATAATCATTTCGCCTGATATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTa > 4:6735938/1‑149 (MQ=255)
aCAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTAtt > 2:1209268/1‑115 (MQ=255)
aGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGa < 2:6545598/149‑1 (MQ=255)
gTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGAt < 1:6028680/149‑1 (MQ=255)
aGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCTGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATca < 1:3544339/149‑1 (MQ=255)
gACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATcac > 4:3470539/1‑149 (MQ=255)
gACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTACCGATcac > 2:2076908/1‑149 (MQ=255)
cAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACAt > 4:803155/1‑149 (MQ=255)
aaTTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCTGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATc > 3:6382944/1‑149 (MQ=255)
aaTTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTAt < 2:6244776/139‑1 (MQ=255)
aaTTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATc > 3:2964446/1‑149 (MQ=255)
aaTTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATc > 3:5600324/1‑149 (MQ=255)
aaTTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATc < 1:2761739/149‑1 (MQ=255)
ttCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCTGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGAGCACATCCAGTa > 1:2588939/1‑149 (MQ=255)
ttCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTa < 3:704873/149‑1 (MQ=255)
aTAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCCGGGGAGCGGCCAGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGc > 2:5189539/1‑149 (MQ=255)
tAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGcc > 3:88639/1‑149 (MQ=255)
aaTCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTCtt > 1:7046032/1‑96 (MQ=255)
aTTTCGCCTGAAATAATGCAGCGGGTTAATTTACGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCAc < 4:4268747/149‑1 (MQ=255)
tttCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACg > 3:6587619/1‑149 (MQ=255)
ttCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAGATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACgg < 3:2477700/149‑1 (MQ=255)
cGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGtt < 3:3984760/149‑1 (MQ=255)
ccTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTAt > 4:526998/1‑149 (MQ=255)
cTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTGCACGGTTAtt > 4:6095268/1‑149 (MQ=255)
gAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATTGATCACATCCAGTACGCCTTCACGGTTATTgg > 3:4914112/1‑149 (MQ=255)
aaaTAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGa < 2:5808747/149‑1 (MQ=255)
aataatGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGa > 3:3216097/1‑148 (MQ=255)
aatGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTaa > 4:2123184/1‑102 (MQ=255)
aatGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCt > 1:3996543/1‑149 (MQ=255)
cAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGATTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTgcgc < 2:1482681/149‑1 (MQ=255)
aGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGcgcg > 2:4152202/1‑149 (MQ=255)
aGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGcgcg < 4:5513737/149‑1 (MQ=255)
gggTTAATTGCCGCGAATTATGCAGCCTTCATGCAGGCAGTGTGTTGCCGGGCGGGCTGCCGGTTATATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTa > 2:4907470/1‑149 (MQ=255)
gTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCTGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTAtt > 1:5786773/1‑149 (MQ=255)
tAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTAtttt < 4:569696/149‑1 (MQ=255)
tAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTAtttt > 4:3075913/1‑149 (MQ=255)
tttCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCAc < 4:6304432/120‑1 (MQ=255)
cgcgAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTg > 2:2904033/1‑149 (MQ=255)
gcgAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGc > 2:6986643/1‑149 (MQ=255)
gcgAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGc < 2:387905/149‑1 (MQ=255)
gcgAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGc > 2:3202771/1‑149 (MQ=255)
gAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGa < 1:1023712/92‑1 (MQ=255)
ttATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTAt > 2:742209/1‑86 (MQ=255)
ttATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGa > 3:1024603/1‑120 (MQ=255)
aTGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGAcc < 1:4846050/149‑1 (MQ=255)
gCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACcgc < 2:3522673/149‑1 (MQ=255)
cgCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACCCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCgcgc < 3:622064/148‑1 (MQ=255)
aGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCgcgc > 2:2269132/1‑149 (MQ=255)
cTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCTGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTAc > 1:5409047/1‑149 (MQ=255)
tcattcaGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCg < 4:1493926/149‑1 (MQ=255)
caGGCATTGTGTTGCCGGGCGTGCTGCTGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCAtt < 3:1503427/149‑1 (MQ=255)
aGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTa < 2:4727503/98‑1 (MQ=255)
aGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCAttt > 4:4383586/1‑149 (MQ=255)
gCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTc > 4:6508410/1‑149 (MQ=255)
aTTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGcc < 1:1313695/102‑1 (MQ=255)
aTTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCa < 4:4020164/149‑1 (MQ=255)
aTTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCa < 2:2466385/149‑1 (MQ=255)
ttGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCAt < 4:1377781/149‑1 (MQ=255)
tgtgTTGCCGGGCGTGCTGCTGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCAtt < 3:5261650/149‑1 (MQ=255)
tgtgTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCAtt < 2:6827860/149‑1 (MQ=255)
ttGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCATTGCaa > 4:6929087/1‑149 (MQ=255)
gCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCAt > 4:5136946/1‑135 (MQ=255)
gCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCAt < 3:5136946/135‑1 (MQ=255)
gCGTGCTGCTGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCATTGCAAAACTaaa < 1:1523479/149‑1 (MQ=255)
gCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCATTGCAAAACTaaa < 1:3407829/149‑1 (MQ=255)
gctgctGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCATTGCAAAACTAAAgcct < 1:2204101/149‑1 (MQ=255)
gctgcCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCATTGCAAAACTAAAgcct < 1:3037870/149‑1 (MQ=255)
tgcCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGTTCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCATTGCAAAACTAAAgcctgc < 3:5874195/149‑1 (MQ=255)
tgcCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCATTGCAAAACTAAAgcctgc < 3:1773150/149‑1 (MQ=255)
gcCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTgg < 4:3244086/78‑1 (MQ=255)
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GCGCCATCGCCACACCAGTAAAGCCCATTAAAAGCGCGCCCAACAGTAGACAATTTTTCATAATCATTTCGCCTGAAATAATGCAGCGGGTTAATTTCCGCGAATTATGCAGCCTTCATTCAGGCATTGTGTTGCCGGGCGTGCTGCCGGTTTTATTGGTCAAATGGCGCTTCGTGTTTAAGAACTTTATCGATCACATCCAGTACGCCTTCACGGTTATTGGAGCCTGCGCGGTATTTTGCCGCTGCGACGACCGCGCTACCGGCATTTTCCATTGCAAAACTAAAGCCTGCCTG > NC_000913/885164‑885459
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
