Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F114 I0 R1
|
92 |
803.2 |
28831534 |
98.5% |
28399060 |
140.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,002,332 |
A→G |
15.6% |
R425R (CGT→CGC) |
fliC ← |
flagellar filament structural protein (flagellin) |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,002,332 | 0 | A | G | 15.6%
| 2016.0
/ 313.6
| 790 | R425R (CGT→CGC) | fliC | flagellar filament structural protein (flagellin) |
| Reads supporting (aligned to +/- strand): ref base A (363/303); new base G (65/59); total (428/362) |
| Fisher's exact test for biased strand distribution p-value = 6.95e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.76e-01 |
Only 100 of 824 total aligned reads displayed.
GGATGATCTGCGCTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTT > NC_000913/2002184‑2002480
|
atCTGCGCTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGaa < 2:2712302/149‑1 (MQ=255)
tCTGCGCTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAAt > 3:561430/1‑149 (MQ=255)
tGCGCTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAAttt < 1:502153/149‑1 (MQ=255)
gcTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTc > 4:1530380/1‑149 (MQ=255)
gcTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTc < 4:3136668/149‑1 (MQ=255)
cTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGa > 2:4950558/1‑141 (MQ=255)
tttCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCt < 1:3196321/148‑1 (MQ=255)
tttCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTa > 2:7282400/1‑149 (MQ=255)
tttCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTa > 1:5146063/1‑149 (MQ=255)
gACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGaa < 4:351642/137‑1 (MQ=255)
aCATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGAt > 2:7033137/1‑149 (MQ=255)
atatTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGc < 3:1336266/149‑1 (MQ=255)
tatTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGAt > 4:1264164/1‑146 (MQ=255)
atTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGa < 4:2037476/149‑1 (MQ=255)
atTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGa < 1:6717993/149‑1 (MQ=255)
atTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGa > 3:2037476/1‑149 (MQ=255)
ttGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGGCAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGAt > 3:41304/1‑149 (MQ=255)
ttGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACGGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGAt > 4:2912813/1‑149 (MQ=255)
ttGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGAt > 2:32506/1‑149 (MQ=255)
tGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATa < 1:3472451/149‑1 (MQ=255)
gACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTAc < 4:6959505/137‑1 (MQ=255)
gACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGc < 1:6470332/149‑1 (MQ=255)
acTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGaa > 4:4444174/1‑125 (MQ=255)
acTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATc > 4:2565100/1‑149 (MQ=255)
acTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATc > 1:1288428/1‑149 (MQ=255)
acTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATc < 4:5666762/149‑1 (MQ=255)
ttCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTAc > 1:1036598/1‑132 (MQ=255)
ttCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGt > 1:242854/1‑149 (MQ=255)
ttCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGt > 4:5471026/1‑149 (MQ=255)
ggTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCa < 2:2892280/149‑1 (MQ=255)
ggTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCa < 3:4350427/149‑1 (MQ=255)
tCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAg > 3:6091219/1‑149 (MQ=255)
cGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGc < 3:1611951/149‑1 (MQ=255)
gCGTCCTGAATACTGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCgg > 4:3584138/1‑149 (MQ=255)
cGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGTGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGa < 4:5222346/149‑1 (MQ=255)
cTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCg > 3:5172378/1‑149 (MQ=255)
gAATACGGGACTGCTCTTCATACAGGGTGTTAGTGGTGTTGTTCAGTTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTg > 2:6719837/1‑149 (MQ=255)
aaTACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTgg > 3:4820055/1‑149 (MQ=255)
aaTACGGGACTGCGCCTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCCTTCAGCGGATCCGTgg < 1:6027944/149‑1 (MQ=255)
tACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGtt > 1:1897992/1‑149 (MQ=255)
tACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGtt > 1:4351566/1‑149 (MQ=255)
cGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGtttt > 1:7133315/1‑149 (MQ=255)
gggACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTa < 2:4553982/149‑1 (MQ=255)
gggACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTa < 3:3388359/149‑1 (MQ=255)
ggACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTAc < 2:3965279/149‑1 (MQ=255)
gACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTAc > 3:6808171/1‑148 (MQ=255)
cTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCAt > 1:6275647/1‑149 (MQ=255)
tGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCAtt < 2:6471731/149‑1 (MQ=255)
tGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCAtt < 2:138221/149‑1 (MQ=255)
tGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCAtt > 1:5804651/1‑149 (MQ=255)
gcTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTc < 4:1059110/123‑1 (MQ=255)
gcTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGc > 4:3830448/1‑149 (MQ=255)
cTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGa < 3:6412342/84‑1 (MQ=255)
cTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGa > 4:6412342/1‑84 (MQ=255)
cTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCa > 1:68266/1‑149 (MQ=255)
ttCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCaa < 4:2293208/149‑1 (MQ=255)
ttCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCaa > 2:3544035/1‑149 (MQ=255)
aGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAAcag < 4:1835689/149‑1 (MQ=255)
aGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAAcag > 2:5239592/1‑149 (MQ=255)
gACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAAcagc > 3:7020046/1‑149 (MQ=255)
gACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGaa < 4:4936747/80‑1 (MQ=255)
gACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAAcagc > 2:1474566/1‑149 (MQ=255)
aGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCACACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGtt > 2:5937774/1‑129 (MQ=255)
ttGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCag > 2:5548361/1‑149 (MQ=255)
tGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCaga < 3:354151/149‑1 (MQ=255)
gTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCt < 2:2270925/78‑1 (MQ=255)
gTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCaga > 3:2178611/1‑147 (MQ=255)
aGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCt > 3:2398818/1‑149 (MQ=255)
tggtgTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTca < 1:1526370/149‑1 (MQ=255)
ggtgTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGAAAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTcac < 2:4224312/149‑1 (MQ=255)
gtgtTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTcacc < 1:778655/149‑1 (MQ=255)
gttgttCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTcaccac < 3:2912813/149‑1 (MQ=255)
gttgttCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTcacca < 1:986835/148‑1 (MQ=255)
ttgttCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCATCGAGGGAAGAACGGAATTTGTCTAc < 2:4766231/71‑1 (MQ=255)
ttgttCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCaccacc > 2:1694039/1‑149 (MQ=255)
gttCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACcag < 3:2607730/149‑1 (MQ=255)
aGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGt > 3:1829835/1‑149 (MQ=255)
tAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCt < 1:2128435/149‑1 (MQ=255)
aaCCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAAcagca < 1:3827939/118‑1 (MQ=255)
aCCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTc < 3:1118550/120‑1 (MQ=255)
cgcgGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGttt > 2:909834/1‑149 (MQ=255)
gcgGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTg > 1:5372894/1‑149 (MQ=255)
gcgGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTg > 4:4681008/1‑149 (MQ=255)
gAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGc > 2:510797/1‑147 (MQ=255)
aGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACATCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTAct < 2:6174864/149‑2 (MQ=255)
aGACGGTTTTGCACCGCACCGAGGGAAGAGCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTAcc > 3:5466759/1‑149 (MQ=255)
aGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCg < 1:4748948/76‑1 (MQ=255)
ggTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCa < 4:41304/149‑1 (MQ=255)
ggTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCa > 1:2907614/1‑149 (MQ=255)
accgcaccgAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATc > 4:3292360/1‑149 (MQ=255)
accgcaccgAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATc > 2:2483974/1‑149 (MQ=255)
gcaccgAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGc > 3:6602786/1‑149 (MQ=255)
gcaccgAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGc < 1:2689622/149‑1 (MQ=255)
gggAAGAACGGAATTTGTCTACAGAAGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCg > 2:1969094/1‑149 (MQ=255)
ggAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGt > 4:6647803/1‑149 (MQ=255)
gaagaaCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTa < 3:3830448/149‑1 (MQ=255)
gaagaaCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTa < 1:4159639/149‑1 (MQ=255)
gaagaaCGGAATTTGTCTACAGATGCGATAACATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTa > 4:730786/1‑149 (MQ=255)
aagaaCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTAt > 4:6141412/1‑149 (MQ=255)
aCGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGttt > 3:3153218/1‑149 (MQ=255)
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GGATGATCTGCGCTTTCGACATATTGGACACTTCGGTCGCATAGTCGGCGTCCTGAATACGGGACTGCGCTTCAGACAGGTTGGTAGTGGTGTTGTTCAGGTTGGTAACCGCGGAATCCAGACGGTTTTGCACCGCACCGAGGGAAGAACGGAATTTGTCTACAGATGCGATAGCATCGTCCAGCGCTTTCAGCGGATCCGTGGTTTTACCATTTGCAACAGCAGTCAGAGCCTCACCACCAGCAGTCAAACCTGTTTGCAGATTACCGCCATTTAAATCGGCAGAATCGTATGTTT > NC_000913/2002184‑2002480
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
