Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A34 F5 I0 R1
|
408 |
67.6 |
2494072 |
96.8% |
2414261 |
139.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,052,380 |
C→T |
5.2% |
pseudogene (949/1053 nt) |
yeeL ← |
pseudogene, glycosyltransferase homology |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,052,380 | 0 | C | T | 5.2%
| 259.6
/ 3.2
| 77 | pseudogene (949/1053 nt) | yeeL | pseudogene, glycosyltransferase homology |
| Reads supporting (aligned to +/- strand): ref base C (34/39); new base T (2/2); total (36/41) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 |
ACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATTGCTGCTGAACGTTTAATCGAGGGTGGTAAGGAT > NC_000913/2052234‑2052528
|
accGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCgg < 1:543512/149‑1 (MQ=255)
accGTTAATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCgg < 3:491763/149‑1 (MQ=255)
ccGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCggg < 3:537419/149‑1 (MQ=255)
ttCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACCCTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCa < 1:482823/149‑1 (MQ=255)
aCAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATTCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGt > 4:94772/1‑149 (MQ=255)
aCAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGt < 4:196839/149‑1 (MQ=255)
cAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGtt < 1:26174/149‑1 (MQ=255)
tACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGc < 1:433941/149‑1 (MQ=255)
tATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATa > 3:253595/1‑149 (MQ=255)
aTAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTg > 3:156880/1‑149 (MQ=255)
aTAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTg > 4:108143/1‑149 (MQ=255)
aaGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGca > 1:381851/1‑149 (MQ=255)
gTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAg < 4:284358/149‑1 (MQ=255)
tctcATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGTGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAgg > 4:137615/1‑149 (MQ=255)
tctcATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGTGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAgg > 2:118576/1‑149 (MQ=255)
tctcATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAgg > 3:285305/1‑149 (MQ=255)
tctcATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAgg > 2:251233/1‑149 (MQ=255)
ctcATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGTGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAggg < 3:137615/149‑1 (MQ=255)
ctcATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGTGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAggg < 1:118576/149‑1 (MQ=255)
ctcATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAggg < 4:371466/149‑1 (MQ=255)
tcATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAgggg > 3:434868/1‑149 (MQ=255)
tcATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAgggg < 4:264028/149‑1 (MQ=255)
atTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGtatt > 1:350503/1‑149 (MQ=255)
ctcGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATtata < 3:353331/149‑1 (MQ=255)
cGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAgg < 2:392990/149‑1 (MQ=255)
aaaCACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACtt < 4:434868/149‑1 (MQ=255)
tttttAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCata > 1:534688/1‑149 (MQ=255)
ttttAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCatat < 1:522428/149‑1 (MQ=255)
tttAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATg > 4:236604/1‑149 (MQ=255)
tAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGtatt < 2:225666/129‑1 (MQ=255)
tAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGtatt > 1:225666/1‑129 (MQ=255)
tttGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGa < 2:381851/149‑1 (MQ=255)
tttGCGAATTCATCCAGACTTATATTGTCAA‑TTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAg > 2:767/1‑149 (MQ=255)
ttGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAg < 1:251233/149‑1 (MQ=255)
gCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGtatta > 3:209340/1‑120 (MQ=255)
gCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGtatta < 4:209340/120‑1 (MQ=255)
cattcAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGa < 3:94772/145‑1 (MQ=255)
cATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGa < 3:236604/149‑1 (MQ=255)
cATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGa < 2:534688/149‑1 (MQ=255)
cATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGa < 2:489016/149‑1 (MQ=255)
aGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTAt < 2:350503/149‑1 (MQ=255)
ttGTCAATTTTTTGCCCAACGACGGATGAATCCGAGACATCGGCCATTGCGGGCCTTCGCGTTTTGTACTCAGCATAAACTGCAACAACGGGGGTATTATAGGCAGTTGCCAGATGTAATATTAAGGTGTCAGGAGTTATTGCGAtata > 4:520973/1‑149 (MQ=255)
tGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATaa < 3:277270/149‑1 (MQ=255)
gTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAg < 3:108143/149‑1 (MQ=255)
gTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAg > 4:533287/1‑149 (MQ=255)
tCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTaa < 2:122446/116‑1 (MQ=255)
tCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTaa > 1:122446/1‑116 (MQ=255)
tCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGc > 3:245584/1‑149 (MQ=255)
tCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGc > 3:45605/1‑149 (MQ=255)
aaTTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCAt > 1:326893/1‑149 (MQ=255)
aaTTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTAAGGAGTTATTGCGATATAAGCAt > 4:68467/1‑149 (MQ=255)
ttttGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCttt < 4:45605/149‑1 (MQ=255)
ttGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTa < 2:326893/149‑1 (MQ=255)
cccAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGa < 1:767/149‑1 (MQ=255)
ccAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGa < 3:318128/148‑1 (MQ=255)
ccAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGa > 4:318128/1‑148 (MQ=255)
ccAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGAt > 2:211341/1‑149 (MQ=255)
ccAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGAt > 2:494111/1‑149 (MQ=255)
cAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGAtt < 3:124569/149‑1 (MQ=255)
cAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGAtt > 4:124569/1‑149 (MQ=255)
gacgacTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATtgctg > 1:26987/1‑149 (MQ=255)
tgactCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAatat < 2:34871/96‑1 (MQ=255)
tgactCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAatat > 1:34871/1‑96 (MQ=255)
tgactCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATTGCTGCTGAAc < 2:50587/149‑1 (MQ=255)
tCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATTGCTGCTGAACGttt > 1:476949/1‑149 (MQ=255)
tCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATTGCTGCTGAACGttt > 2:54716/1‑149 (MQ=255)
tCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATTGCTGCTGAACGttt < 2:252716/149‑1 (MQ=255)
cGAGACGTCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATTGCTGCTGAACGTTTaa < 4:77319/149‑1 (MQ=255)
cGAGACGTCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATTGCTGCTGAACGTTTaa > 3:77319/1‑149 (MQ=255)
agaCATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAg < 3:384247/99‑1 (MQ=255)
agaCATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAg > 4:384247/1‑99 (MQ=255)
agaCATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATTGCTGCTGAACGTTTAATc < 2:41580/149‑1 (MQ=255)
aCATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATTGCTGCTGAACGTTTAATCGa < 3:320506/149‑1 (MQ=255)
cATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGa < 3:175835/108‑1 (MQ=255)
cATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGa > 4:175835/1‑108 (MQ=255)
aTCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATTGCTGCTGAACGTTTAATCGAgg > 3:424546/1‑149 (MQ=255)
cATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGTGATATAAGCATCTTTTATGATTGCTGCTGAACGTTTAATCGAGGGTGGTa > 1:411293/1‑149 (MQ=255)
cGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATTGCTGCTGAACGTTTAATCGAGGGTGGTAAGGAt < 2:473775/149‑1 (MQ=255)
|
ACCGTTCATAACAGATCGGCATTACTATGCATAAGTACTGTCTCATATTCTCGCCAAAACACTTTTTAATGCCTTTGCGAATTCATCCAGACTTATATTGTCAATTTTTTGCCCAACGACGACTGACTCCGAGACATCGGCCATTGCGGGCCATCGCGTTTTGTAATCAGCATAAATTGCAACAACAGGGGTATTATAGGCACTTGCCATATGTAATATTGAGGTGTCAGGAGTTATTGCGATATAAGCATCTTTTATGATTGCTGCTGAACGTTTAATCGAGGGTGGTAAGGAT > NC_000913/2052234‑2052528
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
