mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 4,139 | G→A | 6.0% | D136N (GAT→AAT) ‡ | thrC → | L‑threonine synthase |
| RA | 4,140 | A→T | 6.0% | D136V (GAT→GTT) ‡ | thrC → | L‑threonine synthase |
| RA | 11,127 | C→G | 9.0% | S77T (AGT→ACT) | yaaW ← | UPF0174 family protein |
| RA | 72,205 | T→G | 6.2% | intergenic (+90/+24) | yabI → / ← thiQ | DedA family inner membrane protein/thiamine/thiamine pyrophosphate ABC transporter ATPase |
| RA | 83,587 | A→C | 36.4% | intergenic (‑58/+35) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 83,590 | G→T | 40.0% | intergenic (‑61/+32) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 120,154 | Δ1 bp | 16.2% | intergenic (+19/+24) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 120,158:1 | +A | 17.1% | intergenic (+23/+20) | ampE → / ← aroP | ampicillin resistance inner membrane protein; putative signaling protein in beta‑lactamase regulation/aromatic amino acid transporter |
| RA | 121,230 | T→C | 6.3% | M108V (ATG→GTG) | aroP ← | aromatic amino acid transporter |
| RA | 125,232 | T→G | 9.4% | V739G (GTC→GGC) | aceE → | pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate‑binding |
| RA | 125,724 | C→T | 5.7% | I10I (ATC→ATT) | aceF → | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 |
| RA | 138,784 | C→T | 9.5% | intergenic (+151/+51) | cueO → / ← gcd | multicopper oxidase (laccase)/glucose dehydrogenase |
| RA | 138,789 | C→G | 9.6% | intergenic (+156/+46) | cueO → / ← gcd | multicopper oxidase (laccase)/glucose dehydrogenase |
| RA | 138,792 | C→G | 11.8% | intergenic (+159/+43) | cueO → / ← gcd | multicopper oxidase (laccase)/glucose dehydrogenase |
| RA | 138,797 | A→G | 11.8% | intergenic (+164/+38) | cueO → / ← gcd | multicopper oxidase (laccase)/glucose dehydrogenase |
| RA | 143,533 | T→C | 6.0% | L252P (CTG→CCG) ‡ | yadG → | putative ABC transporter ATPase |
| RA | 143,534 | G→A | 7.1% | L252L (CTG→CTA) ‡ | yadG → | putative ABC transporter ATPase |
| RA | 151,519 | A→C | 12.5% | I27M (ATT→ATG) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 151,522 | G→T | 12.9% | A26A (GCC→GCA) | yadK ← | putative fimbrial‑like adhesin protein |
| RA | 172,496 | A→G | 7.1% | Q345Q (CAA→CAG) | fhuB → | iron(3+)‑hydroxamate import ABC transporter permease |
| RA | 172,499 | T→C | 6.9% | H346H (CAT→CAC) | fhuB → | iron(3+)‑hydroxamate import ABC transporter permease |
| RA | 172,500 | G→A | 6.9% | V347M (GTG→ATG) | fhuB → | iron(3+)‑hydroxamate import ABC transporter permease |
| RA | 172,503 | C→T | 6.9% | L348L (CTG→TTG) | fhuB → | iron(3+)‑hydroxamate import ABC transporter permease |
| RA | 208,552 | T→A | 9.9% | L1143I (TTA→ATA) | dnaE → | DNA polymerase III alpha subunit |
| RA | 236,121 | A→G | 6.7% | N19D (AAC→GAC) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 256,449 | T→C | 7.0% | intergenic (+14/‑78) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 256,454 | C→G | 7.1% | intergenic (+19/‑73) | gpt → / → frsA | xanthine phosphoribosyltransferase; xanthine‑guanine phosphoribosyltransferase/fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 285,882 | T→G | 6.0% | I163S (ATC→AGC) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 285,887 | C→A | 6.2% | L165M (CTG→ATG) | yagG → | CP4‑6 prophage; putative sugar transporter |
| RA | 289,863 | T→A | 5.3% | H148L (CAC→CTC) | argF ← | ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 289,866 | T→A | 5.3% | E147V (GAG→GTG) | argF ← | ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 302,225 | T→A | 6.2% | N117Y (AAT→TAT) | paoA ← | PaoABC aldehyde oxidoreductase, 2Fe‑2S subunit |
| RA | 302,227 | A→T | 6.0% | L116H (CTT→CAT) | paoA ← | PaoABC aldehyde oxidoreductase, 2Fe‑2S subunit |
| RA | 374,682 | C→T | 10.2% | P272L (CCG→CTG) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,683 | G→C | 10.0% | P272P (CCG→CCC) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,688 | G→C | 8.8% | R274P (CGA→CCA) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 374,689 | A→G | 8.8% | R274R (CGA→CGG) ‡ | mhpE → | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I |
| RA | 380,797 | G→A | 10.3% | P16S (CCC→TCC) | yaiO ← | outer membrane protein |
| RA | 381,301 | A→T | 9.1% | intergenic (‑41/‑50) | yaiX ← / → insC1 | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase/IS2 repressor TnpA |
| RA | 381,302 | A→T | 9.1% | intergenic (‑42/‑49) | yaiX ← / → insC1 | pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase/IS2 repressor TnpA |
| RA | 397,273 | C→T | 5.8% | A212V (GCC→GTC) | sbmA → | peptide antibiotic transporter |
| RA | 397,277 | C→G | 5.7% | I213M (ATC→ATG) | sbmA → | peptide antibiotic transporter |
| RA | 397,281 | A→G | 5.4% | T215A (ACG→GCG) | sbmA → | peptide antibiotic transporter |
| RA | 420,941 | T→A | 14.7% | intergenic (+31/‑45) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,942 | G→T | 14.7% | intergenic (+32/‑44) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,945 | A→C | 15.6% | intergenic (+35/‑41) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 420,946 | T→A | 16.1% | intergenic (+36/‑40) | brnQ → / → proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| RA | 472,811 | G→T | 6.7% | E72* (GAA→TAA) | glnK → | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB |
| RA | 475,971 | C→G | 16.9% | intergenic (+20/+11) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 475,972 | C→G | 16.9% | intergenic (+21/+10) | ybaY → / ← ybaZ | outer membrane lipoprotein/excision repair protein, alkyltransferase‑like protein ATL |
| RA | 489,958 | T→C | 18.5% | intergenic (+60/+152) | mscK → / ← ybaM | mechanosensitive channel protein, intermediate conductance, K+ regulated/DUF2496 family protein |
| RA | 489,963 | G→C | 17.9% | intergenic (+65/+147) | mscK → / ← ybaM | mechanosensitive channel protein, intermediate conductance, K+ regulated/DUF2496 family protein |
| RA | 543,091 | G→C | 44.4% | intergenic (+58/+170) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 543,094 | G→C | 44.2% | intergenic (+61/+167) | glxK → / ← allE | glycerate kinase II/S‑ureidoglycine aminohydrolase |
| RA | 553,885 | G→A | 7.7% | T19I (ACC→ATC) | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,887 | G→C | 7.5% | I18M (ATC→ATG) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 553,889 | T→C | 7.8% | I18V (ATC→GTC) ‡ | lpxH ← | UDP‑2,3‑diacylglucosamine pyrophosphohydrolase |
| RA | 579,084 | C→T | 9.1% | intergenic (‑191/+100) | borD ← / ← ybcV | DLP12 prophage; putative lipoprotein/DLP12 prophage; uncharacterized protein |
| RA | 594,946 | C→A | 9.1% | Q166H (CAG→CAT) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,948 | G→C | 9.1% | Q166E (CAG→GAG) ‡ | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 594,950 | T→G | 8.9% | H165P (CAT→CCT) | cusR ← | response regulator in two‑component regulatory system with CusS |
| RA | 624,659 | A→T | 6.7% | intergenic (‑149/‑226) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 624,664 | G→T | 6.2% | intergenic (‑154/‑221) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 624,665 | G→C | 6.2% | intergenic (‑155/‑220) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 624,666 | A→C | 7.5% | intergenic (‑156/‑219) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 624,671 | A→T | 6.2% | intergenic (‑161/‑214) | fepB ← / → entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| RA | 639,654 | T→C | 18.7% | intergenic (+146/‑99) | ahpC → / → ahpF | alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding |
| RA | 639,657 | G→A | 18.7% | intergenic (+149/‑96) | ahpC → / → ahpF | alkyl hydroperoxide reductase, C22 subunit/alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)‑binding |
| RA | 659,204 | C→T | 16.7% | intergenic (+54/+47) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,205 | A→T | 18.3% | intergenic (+55/+46) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,206 | A→T | 18.3% | intergenic (+56/+45) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 659,207 | A→G | 18.5% | intergenic (+57/+44) | tatE → / ← lipA | TatABCE protein translocation system subunit/lipoate synthase |
| RA | 665,094 | G→C | 14.1% | P33A (CCT→GCT) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
| RA | 732,503 | G→A | 9.0% | R974Q (CGG→CAG) | rhsC → | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 732,506 | T→C | 8.9% | L975P (CTG→CCG) | rhsC → | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 744,699 | G→T | 6.0% | G153C (GGC→TGC) | ybgK → | putative allophanate hydrolase, subunit 2 |
| RA | 744,702 | A→C | 6.0% | K154Q (AAA→CAA) | ybgK → | putative allophanate hydrolase, subunit 2 |
| RA | 756,643 | T→A | 11.1% | I246N (ATT→AAT) | sdhA → | succinate dehydrogenase, flavoprotein subunit |
| RA | 781,824 | C→T | 22.1% | intergenic (+172/‑261) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,826 | A→T | 21.0% | intergenic (+174/‑259) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 781,828 | A→G | 20.9% | intergenic (+176/‑257) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| RA | 803,409 | C→T | 8.3% | intergenic (+89/‑94) | ybhI → / → ybhJ | putative DASS family tricarboxylate or dicarboxylate transporter/aconitase family protein |
| RA | 816,710 | A→T | 5.9% | intergenic (‑63/‑334) | ybhK ← / → moaA | putative CofD superfamily transferase/molybdopterin biosynthesis protein A |
| RA | 847,213 | A→T | 9.6% | intergenic (‑94/+45) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,214 | T→A | 9.6% | intergenic (‑95/+44) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 847,215 | A→T | 9.6% | intergenic (‑96/+43) | glnP ← / ← glnH | glutamine transporter subunit/glutamine transporter subunit |
| RA | 869,724 | A→C | 9.6% | N105T (AAC→ACC) | gsiB → | glutathione ABC transporter periplasmic binding protein |
| RA | 940,751 | T→C | 11.4% | intergenic (+31/‑208) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 940,754 | G→A | 11.4% | intergenic (+34/‑205) | serS → / → dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| RA | 953,720 | A→T | 5.9% | N249K (AAT→AAA) | focA ← | formate channel |
| RA | 958,769 | C→G | 12.8% | intergenic (+28/‑43) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,771 | A→T | 12.6% | intergenic (+30/‑41) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 958,773 | C→G | 12.8% | intergenic (+32/‑39) | serC → / → aroA | 3‑phosphoserine/phosphohydroxythreonine aminotransferase/5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 964,148 | T→C | 7.8% | intergenic (+36/‑172) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,150 | T→A | 7.8% | intergenic (+38/‑170) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 964,152 | G→A | 8.3% | intergenic (+40/‑168) | ihfB → / → ycaI | integration host factor (IHF), DNA‑binding protein, beta subunit/ComEC family inner membrane protein |
| RA | 975,700 | G→T | 6.1% | D27Y (GAC→TAC) ‡ | mukE → | chromosome condensin MukBEF, MukE localization factor |
| RA | 975,701 | A→C | 6.1% | D27A (GAC→GCC) ‡ | mukE → | chromosome condensin MukBEF, MukE localization factor |
| RA | 1,018,983 | A→T | 13.9% | intergenic (+46/+30) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,018,986 | A→T | 13.9% | intergenic (+49/+27) | matP → / ← ompA | Ter macrodomain organizer matS‑binding protein/outer membrane protein A (3a;II*;G;d) |
| RA | 1,022,599 | G→T | 6.4% | P429T (CCA→ACA) | yccS ← | putative transporter, FUSC superfamily inner membrane protein |
| RA | 1,022,603 | G→C | 6.4% | C427W (TGC→TGG) | yccS ← | putative transporter, FUSC superfamily inner membrane protein |
| RA | 1,041,937 | T→G | 12.5% | intergenic (+22/+93) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,041,940 | C→A | 15.6% | intergenic (+25/+90) | appA → / ← etk | phosphoanhydride phosphorylase/tyrosine‑protein kinase, role in O‑antigen capsule formation |
| RA | 1,048,429 | C→T | 7.3% | W88* (TGG→TAG) ‡ | gfcC ← | putative O‑antigen capsule production periplasmic protein |
| RA | 1,048,430 | A→G | 7.1% | W88R (TGG→CGG) ‡ | gfcC ← | putative O‑antigen capsule production periplasmic protein |
| RA | 1,060,121 | T→G | 9.1% | V289G (GTT→GGT) | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
| RA | 1,060,123 | A→T | 8.2% | N290Y (AAC→TAC) ‡ | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
| RA | 1,060,125 | C→A | 8.6% | N290K (AAC→AAA) ‡ | torA → | trimethylamine N‑oxide (TMAO) reductase I, catalytic subunit |
| RA | 1,097,623 | G→A | 8.7% | noncoding (30/88 nt) | serX ← | tRNA‑Ser |
| RA | 1,113,544 | G→A | 12.1% | intergenic (+138/‑35) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,546 | T→A | 12.0% | intergenic (+140/‑33) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,113,548 | T→C | 13.3% | intergenic (+142/‑31) | opgH → / → yceK | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist/outer membrane integrity lipoprotein |
| RA | 1,133,157 | A→T | 7.3% | D195V (GAC→GTC) | flgE → | flagellar hook protein |
| RA | 1,151,873 | T→A | 14.3% | intergenic (+22/‑66) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,151,874 | T→A | 14.3% | intergenic (+23/‑65) | acpP → / → fabF | acyl carrier protein (ACP)/3‑oxoacyl‑[acyl‑carrier‑protein] synthase II |
| RA | 1,178,848 | A→T | 5.6% | K86* (AAA→TAA) ‡ | nagK → | N‑acetyl‑D‑glucosamine kinase |
| RA | 1,178,849 | A→T | 5.6% | K86I (AAA→ATA) ‡ | nagK → | N‑acetyl‑D‑glucosamine kinase |
| RA | 1,193,973 | A→C | 8.5% | W106G (TGG→GGG) | nudJ ← | bifunctional thiamine pyrimidine pyrophosphate hydrolase and thiamine pyrophosphate hydrolase |
| RA | 1,201,015 | A→T | 5.4% | T6T (ACT→ACA) | xisE ← | e14 prophage; putative excisionase |
| RA | 1,201,022 | A→T | 5.3% | M4K (ATG→AAG) ‡ | xisE ← | e14 prophage; putative excisionase |
| RA | 1,201,023 | T→C | 5.3% | M4V (ATG→GTG) ‡ | xisE ← | e14 prophage; putative excisionase |
| RA | 1,211,400 | A→G | 7.4% | intergenic (+221/‑13) | mcrA → / → icdC | putative 5‑methylcytosine/5‑hydroxymethylcytosine‑specific restriction nuclease; 5‑methylcytosine DNA binding protein/pseudogene, isocitrate dehydrogenase C‑terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion |
| RA | 1,226,114 | C→G | 6.8% | intergenic (‑34/‑486) | minC ← / → ycgJ | inhibitor of FtsZ ring polymerization/uncharacterized protein |
| RA | 1,226,115 | A→C | 5.4% | intergenic (‑35/‑485) | minC ← / → ycgJ | inhibitor of FtsZ ring polymerization/uncharacterized protein |
| RA | 1,226,118 | G→T | 5.4% | intergenic (‑38/‑482) | minC ← / → ycgJ | inhibitor of FtsZ ring polymerization/uncharacterized protein |
| RA | 1,226,119 | C→G | 5.4% | intergenic (‑39/‑481) | minC ← / → ycgJ | inhibitor of FtsZ ring polymerization/uncharacterized protein |
| RA | 1,256,416 | A→T | 87.8% | intergenic (‑464/+305) | ycgV ← / ← ychF | putative adhesin/catalase inhibitor protein; ATPase, K+‑dependent, ribosome‑associated |
| RA | 1,260,901 | C→T | 9.4% | intergenic (‑98/+27) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,260,904 | A→G | 9.1% | intergenic (‑101/+24) | dauA ← / ← prs | C4‑dicarboxylic acid transporter/phosphoribosylpyrophosphate synthase |
| RA | 1,304,469 | C→G | 5.4% | R212R (CGC→CGG) | oppC → | oligopeptide ABC transporter permease |
| RA | 1,304,474 | T→A | 5.4% | I214N (ATT→AAT) | oppC → | oligopeptide ABC transporter permease |
| RA | 1,304,479 | C→G | 5.6% | P216A (CCG→GCG) | oppC → | oligopeptide ABC transporter permease |
| RA | 1,342,169 | C→A | 5.1% | H83Q (CAC→CAA) | pyrF → | orotidine‑5'‑phosphate decarboxylase |
| RA | 1,449,044 | G→A | 14.3% | intergenic (+26/+32) | feaB → / ← tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| RA | 1,491,756 | G→A | 13.3% | G27D (GGT→GAT) | ydcA → | putative periplasmic protein |
| RA | 1,499,361 | A→G | 10.3% | N142D (AAC→GAC) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,365 | A→T | 10.0% | Q143L (CAG→CTG) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,499,369 | C→T | 10.2% | V144V (GTC→GTT) | rimL → | ribosomal‑protein‑L7/L12‑serine acetyltransferase |
| RA | 1,517,481 | C→G | 7.4% | R31R (CGC→CGG) | ydcX → | DUF2566 family protein |
| RA | 1,517,484 | C→G | 7.7% | I32M (ATC→ATG) | ydcX → | DUF2566 family protein |
| RA | 1,522,716 | T→A | 7.6% | D117V (GAC→GTC) | yncD ← | putative iron outer membrane transporter |
| RA | 1,535,870 | T→A | 8.9% | intergenic (‑12/+67) | yddE ← / ← narV | PhzC‑PhzF family protein/nitrate reductase 2 (NRZ), gamma subunit |
| RA | 1,535,873 | G→C | 8.9% | intergenic (‑15/+64) | yddE ← / ← narV | PhzC‑PhzF family protein/nitrate reductase 2 (NRZ), gamma subunit |
| RA | 1,535,876 | T→A | 8.6% | intergenic (‑18/+61) | yddE ← / ← narV | PhzC‑PhzF family protein/nitrate reductase 2 (NRZ), gamma subunit |
| RA | 1,698,585 | T→G | 6.6% | E199A (GAA→GCA) | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,698,587 | T→A | 6.6% | A198A (GCA→GCT) ‡ | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,698,589 | C→A | 6.7% | A198S (GCA→TCA) ‡ | malI ← | transcriptional repressor of Mal regulon |
| RA | 1,701,108 | A→T | 7.1% | N51I (AAT→ATT) | malY → | PLP‑dependent beta‑cystathionase and maltose regulon regulator |
| RA | 1,712,337 | A→T | 10.6% | intergenic (+179/‑432) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,712,338 | A→T | 10.6% | intergenic (+180/‑431) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,763,450 | A→G | 7.7% | V187A (GTG→GCG) ‡ | sufB ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,763,451 | C→T | 7.7% | V187M (GTG→ATG) ‡ | sufB ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,810,062 | T→C | 11.8% | intergenic (+14/‑149) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,065 | T→G | 13.3% | intergenic (+17/‑146) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,066 | C→A | 13.4% | intergenic (+18/‑145) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,810,069 | G→A | 13.3% | intergenic (+21/‑142) | yniC → / → ydjM | 2‑deoxyglucose‑6‑P phosphatase/inner membrane protein regulated by LexA |
| RA | 1,836,136 | G→C | 11.1% | D22H (GAC→CAC) | ynjB → | putative ABC transporter periplasmic binding protein |
| RA | 1,842,308 | G→A | 6.5% | intergenic (‑173/‑63) | ynjH ← / → gdhA | DUF1496 family protein/glutamate dehydrogenase, NADP‑specific |
| RA | 1,856,333 | T→G | 12.2% | E199A (GAG→GCG) ‡ | ydjH ← | putative kinase |
| RA | 1,856,334 | C→A | 11.1% | E199* (GAG→TAG) ‡ | ydjH ← | putative kinase |
| RA | 1,864,758 | G→A | 28.6% | intergenic (+24/+24) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,864,763 | A→T | 33.3% | intergenic (+29/+19) | yeaD → / ← yeaE | D‑hexose‑6‑phosphate epimerase‑like protein/aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent |
| RA | 1,865,682 | G→C | 9.6% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,890,943 | T→C | 100% | T109A (ACC→GCC) | tsaB ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD |
| RA | 1,913,763 | C→T | 6.1% | V352I (GTC→ATC) | prc ← | carboxy‑terminal protease for penicillin‑binding protein 3 |
| RA | 1,916,756 | A→G | 5.8% | I167V (ATC→GTC) | yebS → | inner membrane PqiA domain protein |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| RA | 1,987,857 | C→T | 10.2% | intergenic (‑99/+16) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,858 | G→C | 14.3% | intergenic (‑100/+15) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,859 | G→C | 10.2% | intergenic (‑101/+14) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 1,987,860 | A→G | 10.5% | intergenic (‑102/+13) | yecJ ← / ← azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| RA | 2,009,731 | A→G | 12.2% | intergenic (+19/‑90) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,732 | C→G | 11.9% | intergenic (+20/‑89) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,009,733 | C→T | 11.9% | intergenic (+21/‑88) | yedF → / → yedK | putative TusA family sulfurtransferase/DUF159 family protein |
| RA | 2,052,380 | C→T | 5.2% | pseudogene (949/1053 nt) | yeeL ← | pseudogene, glycosyltransferase homology |
| RA | 2,081,688 | A→T | 9.5% | I287N (ATT→AAT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6b |
| RA | 2,117,893 | T→C | 6.6% | N171S (AAC→AGC) | wcaK ← | colanic acid biosynthesis protein |
| RA | 2,121,583 | Δ1 bp | 5.6% | intergenic (‑29/+26) | wcaJ ← / ← cpsG | colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase |
| RA | 2,121,586 | G→C | 5.6% | intergenic (‑32/+23) | wcaJ ← / ← cpsG | colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase |
| RA | 2,121,588:1 | +C | 6.0% | intergenic (‑34/+21) | wcaJ ← / ← cpsG | colanic biosynthesis UDP‑glucose lipid carrier transferase/phosphomannomutase |
| RA | 2,140,400 | G→A | 5.8% | R405W (CGG→TGG) | asmA ← | suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane‑anchored periplasmic protein |
| RA | 2,170,119 | T→C | 6.5% | pseudogene (49/475 nt) | gatR ← | pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,180,043 | C→T | 100% | T408M (ACG→ATG) | yegT → | nucleoside transporter, low affinity |
| RA | 2,229,322 | C→G | 11.6% | intergenic (+257/+116) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,229,323 | C→G | 11.6% | intergenic (+258/+115) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| RA | 2,297,451 | T→A | 9.8% | Q65L (CAG→CTG) | ccmA ← | heme export ABC transporter ATPase |
| RA | 2,314,800 | A→C | 21.4% | Q438P (CAG→CCG) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,314,801 | G→T | 21.8% | Q438H (CAG→CAT) ‡ | rcsD → | phosphotransfer intermediate protein in two‑component regulatory system with RcsBC |
| RA | 2,324,650 | T→C | 6.0% | M181T (ATG→ACG) | atoA → | acetyl‑CoA:acetoacetyl‑CoA transferase, beta subunit |
| RA | 2,375,483 | A→T | 10.0% | L160L (CTT→CTA) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,375,484 | A→T | 9.9% | L160H (CTT→CAT) ‡ | menC ← | O‑succinylbenzoyl‑CoA synthase |
| RA | 2,386,694 | G→A | 5.6% | A279T (GCC→ACC) | yfbL → | putative M28A family peptidase |
| RA | 2,391,414 | C→G | 9.5% | R31P (CGA→CCA) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,391,417 | C→G | 9.5% | W30S (TGG→TCG) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,400,684 | T→A | 5.4% | Q291L (CAG→CTG) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
| RA | 2,401,329 | A→G | 5.5% | M76T (ATG→ACG) | nuoF ← | NADH:ubiquinone oxidoreductase, chain F |
| RA | 2,407,898 | A→C | 6.2% | Q113P (CAG→CCG) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,407,899 | G→T | 6.2% | Q113H (CAG→CAT) ‡ | alaA → | glutamate‑pyruvate aminotransferase; glutamic‑pyruvic transaminase (GPT); alanine transaminase |
| RA | 2,420,183 | A→G | 6.6% | R101R (CGT→CGC) | yfcF ← | glutathione S‑transferase |
| RA | 2,420,186 | C→T | 6.8% | A100A (GCG→GCA) | yfcF ← | glutathione S‑transferase |
| RA | 2,428,038 | A→T | 5.8% | intergenic (‑247/+19) | argT ← / ← ubiX | lysine/arginine/ornithine transporter subunit/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| RA | 2,428,039 | A→T | 5.8% | intergenic (‑248/+18) | argT ← / ← ubiX | lysine/arginine/ornithine transporter subunit/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| RA | 2,428,040 | A→T | 5.8% | intergenic (‑249/+17) | argT ← / ← ubiX | lysine/arginine/ornithine transporter subunit/3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| RA | 2,428,697 | A→G | 8.6% | intergenic (‑71/+24) | ubiX ← / ← purF | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase |
| RA | 2,428,699 | A→T | 8.6% | intergenic (‑73/+22) | ubiX ← / ← purF | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase |
| RA | 2,428,701 | C→T | 8.4% | intergenic (‑75/+20) | ubiX ← / ← purF | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase/amidophosphoribosyltransferase |
| RA | 2,440,865 | C→T | 10.0% | L247L (CTG→CTA) ‡ | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,440,866 | A→G | 9.7% | L247P (CTG→CCG) ‡ | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,463,057 | G→T | 10.5% | E16* (GAA→TAA) | yfdF → | uncharacterized protein |
| RA | 2,518,082 | C→G | 11.3% | noncoding (35/76 nt) | alaX ← | tRNA‑Ala |
| RA | 2,571,172 | T→C | 8.0% | N194D (AAT→GAT) | eutE ← | aldehyde oxidoreductase, ethanolamine utilization protein |
| RA | 2,589,122 | G→A | 5.9% | G510S (GGC→AGC) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,589,125 | T→C | 6.3% | F511L (TTT→CTT) | acrD → | aminoglycoside/multidrug efflux system |
| RA | 2,653,367 | G→A | 13.3% | intergenic (+28/‑488) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,653,372 | T→C | 13.3% | intergenic (+33/‑483) | sseA → / → ryfA | 3‑mercaptopyruvate sulfurtransferase/novel sRNA, function unknown |
| RA | 2,683,209 | C→T | 9.1% | P116L (CCG→CTG) | yphH → | putative DNA‑binding transcriptional regulator |
| RA | 2,691,169 | A→T | 9.9% | noncoding (172/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,171 | T→A | 10.2% | noncoding (170/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,691,173 | A→T | 10.4% | noncoding (168/184 nt) | glmY ← | sRNA activator of glmS mRNA, glmZ processing antagonist |
| RA | 2,705,868 | A→T | 6.5% | I419I (ATT→ATA) | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,705,871 | A→T | 6.6% | V418V (GTT→GTA) | lepA ← | back‑translocating elongation factor EF4, GTPase |
| RA | 2,713,371 | C→T | 6.8% | A159V (GCA→GTA) | srmB → | ATP‑dependent RNA helicase |
| RA | 2,717,169 | T→G | 5.6% | L139R (CTC→CGC) ‡ | ung → | uracil‑DNA‑glycosylase |
| RA | 2,717,170 | C→A | 5.6% | L139L (CTC→CTA) ‡ | ung → | uracil‑DNA‑glycosylase |
| RA | 2,724,095 | C→A | 7.1% | intergenic (+13/‑33) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,097 | T→A | 7.0% | intergenic (+15/‑31) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,724,099 | T→G | 6.9% | intergenic (+17/‑29) | pssA → / → yfiM | phosphatidylserine synthase; CDP‑diacylglycerol‑serine O‑phosphatidyltransferase/putative lipoprotein |
| RA | 2,761,620 | T→G | 8.1% | K641Q (AAG→CAG) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,761,623 | C→A | 7.8% | V640L (GTA→TTA) | yfjK ← | radiation resistance protein; DEAD/H helicase‑like protein; CP4‑57 putative defective prophage |
| RA | 2,768,609 | T→C | 11.6% | intergenic (+36/‑56) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,614 | A→C | 11.3% | intergenic (+41/‑51) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,768,615 | G→T | 12.5% | intergenic (+42/‑50) | yfjP → / → yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| RA | 2,791,738 | Δ1 bp | 10.2% | coding (466/1449 nt) | gabD → | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
| RA | 2,791,743 | C→G | 10.5% | N157K (AAC→AAG) | gabD → | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
| RA | 2,791,747:1 | +A | 10.2% | coding (475/1449 nt) | gabD → | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
| RA | 2,801,056 | A→T | 9.2% | N31I (AAT→ATT) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,810,872 | C→T | 5.4% | H35Y (CAC→TAC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,810,873 | A→G | 5.4% | H35R (CAC→CGC) ‡ | mprA → | transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,814,174 | T→A | 8.6% | intergenic (+20/+44) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,814,175 | T→A | 8.6% | intergenic (+21/+43) | emrB → / ← luxS | multidrug efflux system protein/S‑ribosylhomocysteine lyase |
| RA | 2,818,392 | A→T | 5.8% | intergenic (‑118/+81) | argY ← / ← argV | tRNA‑Arg/tRNA‑Arg |
| RA | 2,818,393 | A→T | 6.0% | intergenic (‑119/+80) | argY ← / ← argV | tRNA‑Arg/tRNA‑Arg |
| RA | 2,822,673 | C→T | 6.8% | intergenic (‑34/+35) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,822,678 | G→T | 6.7% | intergenic (‑39/+30) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,822,679 | A→C | 6.7% | intergenic (‑40/+29) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,822,684 | A→G | 6.4% | intergenic (‑45/+24) | recX ← / ← recA | regulatory protein for RecA/DNA recombination and repair protein; ssDNA‑dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP‑dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
| RA | 2,899,821 | G→T | 7.8% | I151I (ATC→ATA) | ygcW ← | putative SDR family oxidoreductase |
| RA | 2,918,017 | C→T | 12.1% | intergenic (+204/+28) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,019 | G→T | 11.6% | intergenic (+206/+26) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,020 | A→C | 11.4% | intergenic (+207/+25) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,918,022 | A→G | 11.1% | intergenic (+209/+23) | barA → / ← gudD | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY/D‑glucarate dehydratase 1 |
| RA | 2,971,146 | T→C | 9.4% | intergenic (+13/‑125) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,151 | T→C | 9.4% | intergenic (+18/‑120) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 2,971,154 | G→A | 9.6% | intergenic (+21/‑117) | ygdQ → / → ygdR | UPF0053 family inner membrane protein/DUF903 family verified lipoprotein |
| RA | 3,001,626 | G→A | 6.4% | G428S (GGC→AGC) | xdhA → | xanthine dehydrogenase, molybdenum binding subunit |
| RA | 3,020,510 | G→T | 12.7% | intergenic (+21/‑30) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,511 | C→G | 12.7% | intergenic (+22/‑29) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,020,512 | A→C | 13.8% | intergenic (+23/‑28) | ssnA → / → ygfM | putative chlorohydrolase/aminohydrolase/putative oxidoreductase |
| RA | 3,031,221 | T→A | 9.5% | intergenic (‑290/‑146) | ygfT ← / → uacT | putative oxidoreductase, Fe‑S subunit/nucleotide‑binding subunit/uric acid permease |
| RA | 3,059,703 | A→T | 8.1% | intergenic (‑2/‑50) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,059,704 | A→T | 8.0% | intergenic (‑3/‑49) | yqfE ← / → argP | pseudogene, LysR family/transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
| RA | 3,095,733 | T→G | 6.5% | I212M (ATT→ATG) | yggS → | UPF0001 family protein, PLP‑binding |
| RA | 3,101,600 | C→T | 6.7% | A8A (GCG→GCA) ‡ | yggN ← | DUF2884 family putative periplasmic protein |
| RA | 3,101,602 | C→G | 6.5% | A8P (GCG→CCG) ‡ | yggN ← | DUF2884 family putative periplasmic protein |
| RA | 3,101,604 | A→G | 6.3% | L7P (CTG→CCG) | yggN ← | DUF2884 family putative periplasmic protein |
| RA | 3,143,128 | A→G | 5.1% | F346S (TTC→TCC) | hybB ← | putative hydrogenase 2 cytochrome b type component |
| RA | 3,156,590 | C→A | 8.1% | intergenic (+72/‑33) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,156,591 | T→G | 8.3% | intergenic (+73/‑32) | yqhD → / → dkgA | aldehyde reductase, NADPH‑dependent/2,5‑diketo‑D‑gluconate reductase A |
| RA | 3,175,546 | T→A | 5.0% | Q154L (CAG→CTG) | yqiA ← | acyl CoA esterase |
| RA | 3,183,345:1 | +T | 13.0% | intergenic (+22/+468) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,183,350 | Δ1 bp | 11.8% | intergenic (+27/+463) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,206,671 | C→A | 5.7% | A70D (GCC→GAC) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,673 | T→A | 5.7% | C71S (TGT→AGT) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,675 | T→G | 5.1% | C71W (TGT→TGG) ‡ | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,236,076 | C→T | 7.1% | H39H (CAC→CAT) | ygjP → | putative metal dependent hydrolase |
| RA | 3,256,450 | C→T | 6.0% | V68I (GTT→ATT) | yhaM ← | putative L‑serine dehydratase alpha chain |
| RA | 3,324,952 | A→G | 7.2% | intergenic (‑41/+49) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,955 | A→G | 5.8% | intergenic (‑44/+46) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,956 | C→T | 5.9% | intergenic (‑45/+45) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,324,959 | C→T | 5.7% | intergenic (‑48/+42) | folP ← / ← ftsH | 7,8‑dihydropteroate synthase/protease, ATP‑dependent zinc‑metallo |
| RA | 3,333,753 | C→T | 5.4% | A15V (GCG→GTG) | ispB → | octaprenyl diphosphate synthase |
| RA | 3,354,537 | C→G | 6.3% | intergenic (‑487/‑188) | yhcC ← / → gltB | putative Fe‑S oxidoreductase, Radical SAM superfamily protein/glutamate synthase, large subunit |
| RA | 3,471,361 | T→G | 7.9% | intergenic (‑32/+39) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,362 | C→A | 7.9% | intergenic (‑33/+38) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,471,366 | A→G | 8.6% | intergenic (‑37/+34) | tufA ← / ← fusA | translation elongation factor EF‑Tu 1/protein chain elongation factor EF‑G, GTP‑binding |
| RA | 3,533,039 | T→G | 5.9% | R74R (CGT→CGG) | pck → | phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,561,969 | A→T | 7.4% | intergenic (‑146/‑44) | glpE ← / → glpD | thiosulfate:cyanide sulfurtransferase (rhodanese)/sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| RA | 3,561,972 | A→T | 7.4% | intergenic (‑149/‑41) | glpE ← / → glpD | thiosulfate:cyanide sulfurtransferase (rhodanese)/sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| RA | 3,642,358 | T→A | 8.9% | intergenic (+27/+22) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,642,361 | T→A | 9.1% | intergenic (+30/+19) | dtpB → / ← rsmJ | dipeptide and tripeptide permease B/16S rRNA m(2)G1516 methyltransferase, SAM‑dependent |
| RA | 3,657,599 | T→A | 14.7% | intergenic (+32/+387) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,601 | G→C | 14.5% | intergenic (+34/+385) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,657,603 | T→A | 15.4% | intergenic (+36/+383) | hdeD → / ← arrS | acid‑resistance membrane protein/antisense sRNA ArrS, function unknown |
| RA | 3,676,271 | A→T | 8.7% | intergenic (+163/+19) | yhjE → / ← yhjG | putative MFS transporter; membrane protein/putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,697,969 | C→G | 5.7% | H504Q (CAC→CAG) | bcsE → | cellulose production protein |
| RA | 3,702,835 | G→A | 5.5% | L12L (CTG→TTG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,837 | G→C | 5.7% | P11R (CCG→CGG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,702,839 | T→C | 6.3% | Q10Q (CAA→CAG) | dppF ← | dipeptide/heme ABC transporter ATPas |
| RA | 3,714,163:1 | +T | 7.8% | coding (2232/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,714,168 | Δ1 bp | 7.6% | coding (2227/2334 nt) | bisC ← | biotin sulfoxide reductase |
| RA | 3,720,294 | T→C | 5.5% | intergenic (+33/+154) | cspA → / ← hokA | RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small |
| RA | 3,720,299 | T→A | 5.9% | intergenic (+38/+149) | cspA → / ← hokA | RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small |
| RA | 3,720,300 | T→A | 6.2% | intergenic (+39/+148) | cspA → / ← hokA | RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small |
| RA | 3,720,305 | G→A | 6.2% | intergenic (+44/+143) | cspA → / ← hokA | RNA chaperone and antiterminator, cold‑inducible/toxic polypeptide, small |
| RA | 3,722,300 | G→T | 10.3% | intergenic (+195/+28) | sokA → / ← glyS | pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit |
| RA | 3,722,301 | A→C | 10.3% | intergenic (+196/+27) | sokA → / ← glyS | pseudogene, sRNA antisense regulator blocking mokA/hokA translation/glycine tRNA synthetase, beta subunit |
| RA | 3,729,408 | C→G | 5.4% | intergenic (‑37/+35) | xylB ← / ← xylA | xylulokinase/D‑xylose isomerase |
| RA | 3,736,322 | G→T | 7.1% | intergenic (+165/+31) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| RA | 3,736,323 | A→G | 7.5% | intergenic (+166/+30) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| RA | 3,736,324 | C→T | 7.3% | intergenic (+167/+29) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| RA | 3,736,325 | A→C | 7.8% | intergenic (+168/+28) | xylR → / ← bax | xylose divergent operon transcriptional activator/putative glucosaminidase |
| RA | 3,781,051 | C→G | 10.0% | intergenic (+34/‑164) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 3,798,234 | A→T | 7.6% | intergenic (+27/+5) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,798,235 | A→T | 7.5% | intergenic (+28/+4) | waaL → / ← waaU | O‑antigen ligase/lipopolysaccharide core biosynthesis |
| RA | 3,817,940 | T→A | 5.2% | F61I (TTC→ATC) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,948 | G→T | 5.8% | E63D (GAG→GAT) | dinD → | DNA damage‑inducible protein |
| RA | 3,817,949 | A→C | 6.0% | I64L (ATC→CTC) | dinD → | DNA damage‑inducible protein |
| RA | 3,832,188 | A→T | 5.4% | intergenic (+22/+31) | yicH → / ← yicI | putative inner membrane‑anchored periplasmic AsmA family protein/putative alpha‑glucosidase |
| RA | 3,888,212 | Δ1 bp | 8.0% | intergenic (+20/‑223) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,888,219 | T→A | 8.5% | intergenic (+27/‑216) | mnmE → / → tnaC | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase/tryptophanase leader peptide |
| RA | 3,891,502 | C→G | 21.0% | intergenic (+19/‑113) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,504 | T→A | 21.7% | intergenic (+21/‑111) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,891,506 | C→G | 19.0% | intergenic (+23/‑109) | tnaB → / → mdtL | tryptophan transporter of low affinity/multidrug efflux system protein |
| RA | 3,897,613 | G→A | 7.5% | P36P (CCG→CCA) | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,897,614 | C→G | 7.5% | L37V (CTG→GTG) ‡ | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,897,615 | T→C | 7.6% | L37P (CTG→CCG) ‡ | cbrB → | PRK09823 family inner membrane protein, creBC regulon |
| RA | 3,908,512 | A→C | 5.1% | intergenic (‑146/+37) | pstB ← / ← pstA | phosphate ABC transporter ATPase/phosphate ABC transporter permease |
| RA | 3,915,373 | C→T | 8.3% | intergenic (‑173/+180) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,915,375 | G→C | 8.3% | intergenic (‑175/+178) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,915,377 | A→G | 8.3% | intergenic (‑177/+176) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,915,428 | A→G | 6.1% | intergenic (‑228/+125) | glmU ← / ← atpC | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase/F1 sector of membrane‑bound ATP synthase, epsilon subunit |
| RA | 3,959,480 | A→T | 15.0% | intergenic (+35/+52) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,481 | C→G | 15.0% | intergenic (+36/+51) | ilvC → / ← ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| RA | 3,959,924 | A→T | 10.9% | intergenic (‑111/+88) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,959,925 | A→T | 10.9% | intergenic (‑112/+87) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,959,926 | A→T | 10.9% | intergenic (‑113/+86) | ppiC ← / ← yifN | peptidyl‑prolyl cis‑trans isomerase C (rotamase C)/PemK toxin family pseudogene |
| RA | 3,970,813 | Δ1 bp | 7.8% | coding (681/1131 nt) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| RA | 3,970,817:1 | +G | 8.0% | coding (685/1131 nt) | wecB → | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| RA | 3,971,996 | T→A | 6.9% | L246Q (CTG→CAG) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| RA | 3,972,673 | A→C | 8.3% | E51A (GAG→GCG) ‡ | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 3,972,674 | G→T | 8.3% | E51D (GAG→GAT) ‡ | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 4,009,002 | G→T | 6.5% | P20T (CCA→ACA) | rhtB ← | homoserine, homoserine lactone and S‑methyl‑methionine efflux pump |
| RA | 4,041,216 | T→C | 10.4% | Q73R (CAG→CGG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,217 | G→A | 10.4% | Q73* (CAG→TAG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,220 | T→C | 10.4% | S72G (AGC→GGC) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,041,221 | G→A | 10.4% | A71A (GCC→GCT) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis protein B |
| RA | 4,049,986 | G→T | 30.2% | noncoding (88/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,049,989 | A→C | 29.2% | noncoding (91/109 nt) | spf → | Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent |
| RA | 4,056,039 | C→A | 5.0% | D101Y (GAC→TAC) | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
| RA | 4,060,261 | G→T | 10.9% | intergenic (+31/‑186) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,060,264 | A→C | 10.9% | intergenic (+34/‑183) | typA → / → yihL | GTP‑binding protein/putative DNA‑binding transcriptional regulator |
| RA | 4,080,024 | G→C | 6.0% | intergenic (+55/+275) | yiiF → / ← fdhE | putative thymol sensitivity protein, CopG family putative transcriptional regulator/formate dehydrogenase formation protein |
| RA | 4,080,616 | C→A | 6.6% | G205C (GGC→TGC) | fdhE ← | formate dehydrogenase formation protein |
| RA | 4,080,621 | T→G | 6.5% | Q203P (CAA→CCA) | fdhE ← | formate dehydrogenase formation protein |
| RA | 4,114,465 | T→C | 6.2% | D3G (GAT→GGT) | fpr ← | ferredoxin‑NADP reductase; flavodoxin reductase |
| RA | 4,121,959 | T→G | 7.4% | N110T (AAC→ACC) | hslV ← | peptidase component of the HslUV protease |
| RA | 4,121,962 | C→A | 6.3% | G109V (GGT→GTT) | hslV ← | peptidase component of the HslUV protease |
| RA | 4,223,854 | T→C | 5.2% | R9R (CGT→CGC) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,223,855 | G→A | 5.2% | A10T (GCG→ACG) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,227,550 | G→A | 6.5% | intergenic (+39/‑181) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,227,555 | A→T | 5.4% | intergenic (+44/‑176) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,227,560 | T→C | 7.1% | intergenic (+49/‑171) | metH → / → yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| RA | 4,236,226 | T→C | 5.3% | intergenic (+78/‑36) | yjbE → / → yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein |
| RA | 4,236,229 | G→A | 5.2% | intergenic (+81/‑33) | yjbE → / → yjbF | extracellular polysaccharide production threonine‑rich protein/extracellular polysaccharide production lipoprotein |
| RA | 4,245,108 | T→G | 7.7% | intergenic (‑33/+121) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,110 | T→G | 7.7% | intergenic (‑35/+119) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,111 | C→A | 7.5% | intergenic (‑36/+118) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,245,113 | C→A | 7.6% | intergenic (‑38/+116) | malF ← / ← malE | maltose transporter subunit/maltose transporter subunit |
| RA | 4,262,250 | G→C | 7.7% | G194G (GGG→GGC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,255 | G→C | 7.2% | S196T (AGC→ACC) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,262,902 | G→A | 8.2% | L21L (TTG→TTA) | pspG → | phage shock protein G |
| RA | 4,291,512 | G→A | 6.6% | M1M (GTG→ATG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,291,513 | T→C | 6.6% | M1A (GTG→GCG) †‡ | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| RA | 4,296,060 | C→T | 24.2% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,314,227 | A→T | 11.5% | intergenic (+30/+117) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,314,233 | A→T | 12.1% | intergenic (+36/+111) | yjdP → / ← phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase |
| RA | 4,316,831 | C→T | 6.1% | E130K (GAG→AAG) | phnM ← | ribophosphonate triphosphate hydrolase |
| RA | 4,328,452 | C→T | 5.3% | R440C (CGT→TGT) | crfC → | clamp‑binding sister replication fork colocalization protein, dynamin‑related |
| RA | 4,335,654 | T→A | 18.5% | intergenic (‑64/+40) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,335,655 | T→A | 18.4% | intergenic (‑65/+39) | eptA ← / ← adiC | lipid A phosphoethanolamine transferase/arginine:agmatine antiporter |
| RA | 4,347,285 | C→G | 12.5% | M14I (ATG→ATC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,347,288 | C→G | 11.3% | P13P (CCG→CCC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,366,854 | T→G | 33.3% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 38.5% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,395,454 | T→C | 7.5% | C463C (TGT→TGC) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,395,455 | G→A | 7.5% | A464T (GCA→ACA) | nnr → | bifunctional NAD(P)H‑hydrate repair enzyme; C‑terminal domain ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase and N‑terminal domain NAD(P)H‑hydrate epimerase |
| RA | 4,462,345 | C→G | 5.9% | V106L (GTC→CTC) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,472,434 | G→A | 12.3% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,472,437 | T→C | 12.9% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,479,012 | A→T | 11.5% | intergenic (+123/+22) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,016 | G→C | 12.5% | intergenic (+127/+18) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,479,020 | A→T | 13.0% | intergenic (+131/+14) | rraB → / ← yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| RA | 4,512,350:1 | +G | 6.2% | coding (65/957 nt) | fecD ← | ferric citrate ABC transporter permease |
| RA | 4,517,511 | G→C | 8.3% | S69R (AGC→AGG) | fecR ← | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| RA | 4,549,932 | T→A | 6.3% | intergenic (+222/+21) | fimH → / ← gntP | minor component of type 1 fimbriae/fructuronate transporter |
| RA | 4,551,422 | T→A | 6.0% | intergenic (‑126/‑214) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| RA | 4,552,182 | G→C | 6.7% | G183R (GGC→CGC) | uxuA → | mannonate hydrolase |
| RA | 4,552,185 | G→C | 6.7% | A184P (GCG→CCG) | uxuA → | mannonate hydrolase |
| RA | 4,552,833 | T→C | 10.7% | intergenic (+13/‑68) | uxuA → / → uxuB | mannonate hydrolase/D‑mannonate oxidoreductase, NAD‑dependent |
| RA | 4,552,837 | Δ1 bp | 10.8% | intergenic (+17/‑64) | uxuA → / → uxuB | mannonate hydrolase/D‑mannonate oxidoreductase, NAD‑dependent |
| RA | 4,552,841:1 | +A | 10.8% | intergenic (+21/‑60) | uxuA → / → uxuB | mannonate hydrolase/D‑mannonate oxidoreductase, NAD‑dependent |
| RA | 4,552,845 | G→A | 10.5% | intergenic (+25/‑56) | uxuA → / → uxuB | mannonate hydrolase/D‑mannonate oxidoreductase, NAD‑dependent |
| RA | 4,556,244 | T→C | 5.7% | D26G (GAC→GGC) | yjiC ← | uncharacterized protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 729342 | 729470 | 129 | 15 [13] | [13] 14 | ybfA/rhsC | DUF2517 family protein/Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| * | * | ÷ | NC_000913 | 3476511 | 3476636 | 126 | 14 [13] | [13] 14 | [fkpA] | [fkpA] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 225998 | NA (NA) | 6 (0.090) | 5/250 | NT | NA | noncoding (240/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 226015 | NA (NA) | noncoding (257/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 228108 | NA (NA) | 9 (0.140) | 7/250 | NT | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 5 (0.080) | 3/240 | NT | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1207790 = | 9 (0.140) | 45 (0.770) | 36/226 | NT | 86.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 6 (0.100) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 9 (0.140) | 31 (0.530) | 26/226 | NT | 81.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 6 (0.100) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 33 (0.510) | 31/250 | NT | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1423475 | 53 (0.800) | 4 (0.060) | 4/248 | NT | 7.0% | pseudogene (275/444 nt) coding (76/186 nt) |
rzpR rzoR |
pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS Rac prophage; putative lipoprotein |
| ? | NC_000913 | = 1423537 | 56 (0.880) | pseudogene (337/444 nt) coding (138/186 nt) |
rzpR rzoR |
pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS Rac prophage; putative lipoprotein |
|||||
| * | ? | NC_000913 | 2150911 = | 27 (0.410) | 4 (0.060) | 4/248 | NT | 14.0% | coding (75/1947 nt) | yegI | protein kinase‑related putative non‑specific DNA‑binding protein |
| ? | NC_000913 | 2150944 = | 23 (0.360) | coding (42/1947 nt) | yegI | protein kinase‑related putative non‑specific DNA‑binding protein | |||||
| * | ? | NC_000913 | 2304697 = | 9 (0.140) | 8 (0.130) | 7/244 | NT | 23.7% | noncoding (281/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 4027550 = | 43 (0.680) | noncoding (229/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | 2692268 = | 68 (1.020) | 4 (0.060) | 4/250 | NT | 5.8% | coding (3276/3888 nt) | purL | phosphoribosylformyl‑glycineamide synthetase |
| ? | NC_000913 | 2692316 = | 63 (0.980) | coding (3228/3888 nt) | purL | phosphoribosylformyl‑glycineamide synthetase | |||||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 25 (0.390) | 7/246 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 3712860 = | 61 (0.920) | 80 (1.200) | 58/258 | NT | 56.3% | coding (75/699 nt) | yhjY | autotransporter beta‑domain protein |
| ? | NC_000913 | = 3873341 | 63 (0.950) | coding (272/618 nt) | dgoA | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase | |||||
| * | ? | NC_000913 | = 3986614 | 37 (0.560) | 6 (0.100) | 5/236 | NT | 13.8% | noncoding (183/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent |
| ? | NC_000913 | = 3986622 | 41 (0.670) | noncoding (191/207 nt) | glmZ | sRNA antisense activator of glmS mRNA, Hfq‑dependent | |||||
| * | ? | NC_000913 | = 4191877 | 53 (0.800) | 3 (0.050) | 3/248 | NT | 5.6% | coding (759/771 nt) | thiG | thiamine biosynthesis ThiGH complex subunit |
| ? | NC_000913 | = 4191903 | 50 (0.780) | coding (733/771 nt) | thiG | thiamine biosynthesis ThiGH complex subunit | |||||
| * | ? | NC_000913 | = 4446407 | 77 (1.160) | 4 (0.060) | 4/246 | NT | 5.2% | coding (2296/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit |
| ? | NC_000913 | = 4446433 | 71 (1.120) | coding (2322/3780 nt) | tamB | translocation and assembly module for autotransporter export, inner membrane subunit | |||||
| * | ? | NC_000913 | 4468200 = | 50 (0.750) | 3 (0.050) | 3/244 | NT | 5.6% | coding (576/2697 nt) | mgtA | magnesium transporter |
| ? | NC_000913 | 4468238 = | 54 (0.860) | coding (614/2697 nt) | mgtA | magnesium transporter | |||||
| * | ? | NC_000913 | = 4534139 | 83 (1.250) | 4 (0.070) | 4/238 | NT | 5.0% | intergenic (‑86/+291) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment |
| ? | NC_000913 | = 4534160 | 74 (1.210) | intergenic (‑107/+270) | yjhX/yjhZ | UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment | |||||