Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A25 F36 I0 R2
|
1302 |
104.9 |
4551290 |
96.3% |
4382892 |
111.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,968,073 |
T→C |
5.0% |
A143A (GCA→GCG) ‡ |
cheB ← |
fused chemotaxis regulator: protein‑glutamate methylesterase in two‑component regulatory system with CheA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,968,073 | 0 | T | C | 5.0%
| 341.1
/ 4.2
| 96 | A143A (GCA→GCG) ‡ | cheB | fused chemotaxis regulator: protein‑glutamate methylesterase in two‑component regulatory system with CheA |
| Reads supporting (aligned to +/- strand): ref base T (46/45); new base C (2/3); total (48/48) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
AATTAACAGTGCCGGGCTGGAAAGCGGCAACGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTGGTGACAAAATCTATCGCCCCCAGCTCCAGC > NC_000913/1967941‑1968214
|
aaTTAACAGTGCCGGGCTGGAAAGCGGCAACGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAAt < 2:1052817/142‑1 (MQ=255)
aaTTAACAGTGCCGGGCTGGAAAGCGGCAACGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAAt > 1:1052817/1‑142 (MQ=255)
aCAGTGCCGGGCTGGAAAGCGGCAACGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACaa > 4:234393/1‑136 (MQ=255)
aCAGTGCCGGGCTGGAAAGCGGCAACGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACaa < 3:234393/136‑1 (MQ=255)
gCCGGGCTGGAAAGCGGCAACGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCa > 2:532062/1‑147 (MQ=255)
gCCGGGCTGGAAAGCGGCAACGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCa < 1:532062/147‑1 (MQ=255)
cGGGCTGGAAAGCGGCAACGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAgg < 2:116756/148‑1 (MQ=255)
ggAAAGCGGCAACGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGcc > 4:277101/1‑148 (MQ=255)
cAACGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGcc < 3:277101/148‑1 (MQ=255)
aCGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTAtgtg > 2:158180/1‑123 (MQ=255)
aCGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTAtgtg < 1:158180/123‑1 (MQ=255)
aCGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGt < 1:714086/148‑1 (MQ=255)
aCGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGt > 2:714086/1‑148 (MQ=255)
aGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCt > 4:714332/1‑148 (MQ=255)
gTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCtt > 3:376229/1‑148 (MQ=255)
gACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAAt > 4:590833/1‑98 (MQ=255)
gACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAAt < 3:590833/98‑1 (MQ=255)
aCGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATgg < 1:891374/99‑1 (MQ=255)
aCGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATgg > 2:891374/1‑99 (MQ=255)
aCGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCa < 1:572816/148‑1 (MQ=255)
aCGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCa > 2:572816/1‑148 (MQ=255)
gAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAAt < 4:376229/148‑1 (MQ=255)
aaTTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCa > 1:227388/1‑109 (MQ=255)
aaTTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCa < 2:227388/109‑1 (MQ=255)
aaTTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCg > 3:315681/1‑116 (MQ=255)
aaTTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCg < 4:315681/116‑1 (MQ=255)
aaTTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCtttt > 2:913998/1‑140 (MQ=255)
aaTTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCtttt < 1:913998/140‑1 (MQ=255)
aTTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTa < 3:471509/129‑1 (MQ=255)
aTTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTa > 4:471509/1‑129 (MQ=255)
aTTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTa > 4:58972/1‑129 (MQ=255)
aTTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTa < 3:58972/129‑1 (MQ=255)
cAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTtg < 1:431750/114‑1 (MQ=255)
cAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTtg > 2:431750/1‑114 (MQ=255)
cAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGtt > 2:803891/1‑148 (MQ=255)
cAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGtt < 3:714332/148‑1 (MQ=255)
cccGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCa > 1:211595/1‑148 (MQ=255)
ccGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTa < 4:290246/83‑1 (MQ=255)
ccGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTa > 3:290246/1‑83 (MQ=255)
cGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCg < 1:871434/110‑1 (MQ=255)
cGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCg > 2:871434/1‑110 (MQ=255)
ttGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCttt < 3:801012/119‑1 (MQ=255)
ttGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCttt > 4:801012/1‑119 (MQ=255)
tGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATa < 1:803891/148‑1 (MQ=255)
aaGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATAcc > 3:543736/1‑148 (MQ=255)
aGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTa > 3:142392/1‑106 (MQ=255)
aGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTa < 4:142392/106‑1 (MQ=255)
gCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCtt < 4:543736/148‑1 (MQ=255)
gCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCtt > 1:986196/1‑148 (MQ=255)
cAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCtt < 1:296498/144‑1 (MQ=255)
cAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCtt > 2:296498/1‑144 (MQ=255)
aaTCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCa < 3:238093/134‑1 (MQ=255)
aaTCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCa > 4:238093/1‑134 (MQ=255)
tCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAAt > 1:303229/1‑148 (MQ=255)
cAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAAt > 1:41092/1‑112 (MQ=255)
cAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAAt < 2:41092/112‑1 (MQ=255)
aaTCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGtgctg < 3:416941/71‑1 (MQ=255)
aaTCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGtgctg > 4:416941/1‑71 (MQ=255)
aTCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATAcc < 2:356147/146‑1 (MQ=255)
aTCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATAcc > 1:356147/1‑146 (MQ=255)
tttttCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGc < 2:303229/148‑1 (MQ=255)
ttttCAGAACTCAACAACGGCGCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTc > 1:686267/1‑98 (MQ=255)
ttttCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTc < 2:686267/98‑1 (MQ=255)
ttttCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCa < 3:501033/124‑1 (MQ=255)
ttttCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCa > 4:501033/1‑124 (MQ=255)
ttttCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCg > 2:470567/1‑148 (MQ=255)
tttCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCgg < 2:211595/148‑1 (MQ=255)
aGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTg < 2:986196/148‑1 (MQ=255)
gAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGTCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTa > 2:37245/1‑81 (MQ=255)
gAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTa < 1:37245/81‑1 (MQ=255)
gAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGc > 1:557200/1‑117 (MQ=255)
gAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGc < 2:557200/117‑1 (MQ=255)
cTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTc < 2:574077/89‑1 (MQ=255)
cTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTc > 1:574077/1‑89 (MQ=255)
caacaaCGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAAt > 2:672853/1‑93 (MQ=255)
caacaaCGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAAt < 1:672853/93‑1 (MQ=255)
caacaaCGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTgg > 1:1085897/1‑143 (MQ=255)
caacaaCGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTgg < 2:1085897/143‑1 (MQ=255)
aacGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCtt < 1:513430/115‑1 (MQ=255)
aacGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCtt > 2:513430/1‑115 (MQ=255)
aacGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTGGTGACAAAAt < 1:470567/148‑1 (MQ=255)
cGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTGGTGACaaa < 4:693480/144‑1 (MQ=255)
cGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTGGTGACaaa > 3:693480/1‑144 (MQ=255)
cGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTGGTGACAAAATCTa < 1:960473/143‑1 (MQ=255)
cGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTGGTGACAAAATCTa > 2:960473/1‑143 (MQ=255)
tCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTCCGGTTTGGTGACAAAATCTATCGCCCCCAg > 1:731719/1‑148 (MQ=255)
attGTCGGCACCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGttt < 2:514367/118‑1 (MQ=255)
attGTCGGCACCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGttt > 1:514367/2‑119 (MQ=255)
ttGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATa < 4:139867/92‑1 (MQ=255)
ttGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATa > 3:139867/1‑92 (MQ=255)
ttGTCGGCACCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTGGTGACaaa < 3:362134/127‑1 (MQ=255)
tGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTGGTGACAAAATCTATCGCCCCCAGCTCCAgc > 4:692360/1‑148 (MQ=255)
tGTCGGCACCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTGGTGACAAAATCTATCGCCCCCAGCTcc > 1:675121/1‑145 (MQ=255)
tGTCGGCACCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTGGTGACAAAATCTATCGCCCCCAGCTcc < 2:675121/145‑1 (MQ=255)
cGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGtt > 3:444968/1‑113 (MQ=255)
cGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGtt < 4:444968/113‑1 (MQ=255)
tGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGa < 2:183650/94‑1 (MQ=255)
tGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGa > 1:183650/1‑94 (MQ=255)
|
AATTAACAGTGCCGGGCTGGAAAGCGGCAACGGTTGCAGTACGTGACGAATTGCCTCAGTTCCACCCGTTGAAGCACCAATCGCAATCAGTTTTTCAGAACTCAACAACGGCCCCGCCTTCAGCGTTGTCGGTGCCGACAATGGCTTATGTGCTGCAAGGCTCGCCTTTGCTGCCGTACGCACCTTTTCAGCAATCATTTCGTTATACGCCAGCATACCTTCGCGAATACCCAGTTGCGGTTTGGTGACAAAATCTATCGCCCCCAGCTCCAGC > NC_000913/1967941‑1968214
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
