Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F68 I0 R1
|
683 |
78.3 |
2772122 |
98.0% |
2716679 |
141.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,568,915 |
G→A |
5.9% |
intergenic (‑92/+39) |
yddW ← / ← gadC |
liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,568,915 | 0 | G | A | 5.9%
| 337.6
/ 8.2
| 103 | intergenic (‑92/+39) | yddW/gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| Reads supporting (aligned to +/- strand): ref base G (49/47); new base A (3/3); total (52/51) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.82e-01 |
Only 100 of 106 total aligned reads displayed.
AACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTGGCTCCAGAGTGACGC > NC_000913/1568767‑1569063
|
aaCTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTGAATACGACAGCAAGCACGAAAAAGGGAGCGATg > 4:456897/1‑149 (MQ=255)
aaCTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATg > 3:294803/1‑149 (MQ=255)
tAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGa < 1:93748/147‑1 (MQ=255)
tAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGa > 2:93748/1‑147 (MQ=255)
tATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑At < 2:334043/149‑1 (MQ=255)
aTCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATc < 4:196300/149‑1 (MQ=255)
cGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATAATTC‑ATCGc < 2:284316/149‑1 (MQ=255)
cTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGAT‑AATTCATCGCTc < 2:187632/149‑1 (MQ=255)
tGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATAATTC‑ATCGCTcc < 3:379832/149‑1 (MQ=255)
ctAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCt > 1:431337/1‑149 (MQ=255)
tAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCTCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCtt > 4:63547/1‑149 (MQ=255)
tAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCtt > 4:155669/1‑149 (MQ=255)
tAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCtt > 2:214088/1‑149 (MQ=255)
tAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATAATTC‑ATCGCTc < 3:286322/140‑1 (MQ=255)
tAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATAATTC‑ATCGCTc > 4:286322/1‑140 (MQ=255)
tCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTtata > 1:625454/1‑149 (MQ=255)
gTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAAc < 2:431337/149‑1 (MQ=255)
gTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAAc > 3:394695/1‑149 (MQ=255)
ttAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAAcc > 2:405844/1‑149 (MQ=255)
ttAATTTCTTGTATCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAAcc > 1:604648/1‑149 (MQ=255)
tttCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTc > 1:260487/1‑149 (MQ=255)
tCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCt > 1:188465/1‑136 (MQ=255)
tCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCt < 2:188465/136‑1 (MQ=255)
ttCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATgg < 1:128233/149‑1 (MQ=255)
ttCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATgg > 2:128233/1‑149 (MQ=255)
cGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGtt > 3:330626/1‑149 (MQ=255)
ggAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAg < 4:294803/149‑1 (MQ=255)
gAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAgt < 2:625454/149‑1 (MQ=255)
gCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAgtgt > 2:541555/1‑149 (MQ=255)
aGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGttt > 2:621861/1‑149 (MQ=255)
gATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCCATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTc < 4:411033/149‑1 (MQ=255)
atatCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCt < 3:93158/149‑1 (MQ=255)
tatCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCtt < 2:509085/149‑1 (MQ=255)
atCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTg < 1:214088/149‑1 (MQ=255)
tCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGt < 4:394695/149‑1 (MQ=255)
tCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGt > 4:437833/1‑149 (MQ=255)
tCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGt > 4:175821/1‑149 (MQ=255)
tCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGt > 2:8292/1‑149 (MQ=255)
cATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGtca > 4:2220/1‑149 (MQ=255)
cATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGtca < 3:553863/149‑1 (MQ=255)
cATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGtca < 3:170930/149‑1 (MQ=255)
atatGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTc > 2:407581/1‑124 (MQ=255)
atatGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTc < 1:407581/124‑1 (MQ=255)
atatGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTAGAACCATTCAGACATGGTTAGTGTTTCTTGtcat > 4:607283/1‑149 (MQ=255)
atGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGtcattc > 3:32505/1‑149 (MQ=255)
tgtgCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGtcattca < 4:330626/149‑1 (MQ=255)
tGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATcaca > 1:300109/1‑149 (MQ=255)
tCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAAtata > 1:84590/1‑149 (MQ=255)
ccGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGtcattc > 1:156449/1‑137 (MQ=255)
ccGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGtcattc < 2:156449/137‑1 (MQ=255)
cGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAgt < 4:375541/149‑1 (MQ=255)
aaCAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTgtggt < 3:437833/149‑1 (MQ=255)
tgtgCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTCGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGt < 1:201405/149‑1 (MQ=255)
tgtgCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGt < 1:621861/149‑1 (MQ=255)
tgCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGc > 2:38137/1‑149 (MQ=255)
cgcTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCAc > 3:558166/1‑149 (MQ=255)
gcTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCAcg > 3:672839/1‑149 (MQ=255)
cTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAgtgt < 4:527349/107‑1 (MQ=255)
tcGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCa > 4:5732/1‑149 (MQ=255)
tcGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCa > 3:12937/1‑149 (MQ=255)
gTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAgtg > 2:115183/1‑124 (MQ=255)
gTACTTATCCCCGTTAAGTAAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAgtg < 1:115183/124‑1 (MQ=255)
tACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCa > 1:644320/1‑83 (MQ=255)
tACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCa < 2:644320/83‑1 (MQ=255)
tATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGgaagaa < 3:5732/149‑1 (MQ=255)
tCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGt < 3:456897/149‑1 (MQ=255)
ccccGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTg > 3:250467/1‑149 (MQ=255)
cccGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGa < 3:155669/149‑1 (MQ=255)
gTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTgtggt > 3:34088/1‑116 (MQ=255)
gTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTgtggt < 4:34088/116‑1 (MQ=255)
gTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCt > 3:466841/1‑149 (MQ=255)
aaGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCtttt < 1:38137/149‑1 (MQ=255)
gTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTgg > 3:309618/1‑149 (MQ=255)
tCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATGGTTCCCTGGTCTTATAGCCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACTTGCGCGCGGGTGCAGGAAGCAGTGACCTTTTAGt > 4:426521/1‑149 (MQ=255)
aaTACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGc > 1:300868/1‑149 (MQ=255)
aaTACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGc < 4:466841/149‑1 (MQ=255)
aTACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCg < 4:32505/149‑1 (MQ=255)
tACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGt > 1:356520/1‑149 (MQ=255)
aCGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGtt < 3:2220/149‑1 (MQ=255)
gACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCt > 3:371380/1‑149 (MQ=255)
gACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCt < 4:12937/149‑1 (MQ=255)
cAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGa < 4:672839/149‑1 (MQ=255)
agcaCGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGtt < 1:94325/149‑1 (MQ=255)
caCGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGa < 1:541555/149‑1 (MQ=255)
aCGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGAt < 4:371380/149‑1 (MQ=255)
aCGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGAt < 1:8292/149‑1 (MQ=255)
cGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGAtt < 3:691184/149‑1 (MQ=255)
gacaaGGGAGCGATAATTC‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTgg > 4:188792/4‑149 (MQ=255)
aaaaaGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTgg > 1:81949/1‑149 (MQ=255)
aaaaaGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTgg < 3:63547/149‑1 (MQ=255)
aaGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTGGCTc < 2:604648/149‑1 (MQ=255)
gggAGCGATAATTC‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTGGCTCCa > 4:170853/1‑149 (MQ=255)
ggAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTGGCTCCag > 1:383014/1‑149 (MQ=255)
gAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTGGCTCCaga > 1:633239/1‑149 (MQ=255)
gAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTGGCTCCaga > 1:540166/1‑149 (MQ=255)
gATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTGGCTCCAGAGTGa > 2:179125/1‑149 (MQ=255)
gATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTGGCTCCAGAGTGa < 2:300868/149‑1 (MQ=255)
aTGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTGGCTCCAGAGTGAc > 2:427967/1‑149 (MQ=255)
aTGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTCGTGCGTTCTGACTGTTGATTGGCTCCAGAGTGAc > 1:495593/1‑149 (MQ=255)
gAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTGGCTCCAGAGTGACGc < 4:309618/149‑1 (MQ=255)
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AACTAGTATCGCTGGTCTTCTAATCGTTAATTTCTTGTTTCGGGAGCAGATATCCATATGTGCTGGTTTCCGGTAAACAGATGTGCGCTCATTCTCGTACTTATCCCCGTTAAGTCAATACGACAGCAAGCACGAAAAAGGGAGCGATGAATT‑ATCGCTCCCTTGTCTTATAACCATTCAGACATGGTTAGTGTTTCTTGTCATTCATCACAATATAGTGTGGTGAACGTGCACGCGGGTGCAGGAAGAAGTGACCTTTTGGTGCGTTCTGACTGTTGATTGGCTCCAGAGTGACGC > NC_000913/1568767‑1569063
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
