Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A35 F9 I0 R1
|
1164 |
192.0 |
7567036 |
97.0% |
7340024 |
130.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
894,952 |
T→A |
6.0% |
intergenic (+56/‑39) |
potF → / → potG |
putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATPase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 894,952 | 0 | T | A | 6.0%
| 480.3
/ 15.9
| 133 | intergenic (+56/‑39) | potF/potG | putrescine ABC transporter periplasmic binding protein/putrescine ABC transporter ATPase |
| Reads supporting (aligned to +/- strand): ref base T (63/62); new base A (4/4); total (67/66) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 |
Only 100 of 135 total aligned reads displayed.
TTCGTGCGAAGCTGTTCACTCTGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTGACCAAATCCTACGATGGTCAACATGCGGTGGATGA > NC_000913/894805‑895100
|
ttCGTGCGAAGCTGTTCACTCTGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTa > 3:148021/1‑149 (MQ=255)
cGTGCGAAGCTGTTCACTCTGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATg < 1:1434274/149‑1 (MQ=255)
cGTGCGAAGCTGTTCACTCTGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATg < 4:1695060/149‑1 (MQ=255)
tGCGAAGCTGTTCACTCTGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGt > 4:1708291/1‑149 (MQ=255)
gAAGCTGTTCACTCTGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTgcg > 4:685454/1‑149 (MQ=255)
gAAGCTGTTCACTCTGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTgcg > 4:582506/1‑149 (MQ=255)
aaGCTGTTCACTCTGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTgcg‑c < 3:1708291/149‑1 (MQ=255)
aaGCTGTTCACTCTGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTgcg‑c < 3:1692411/149‑1 (MQ=255)
aCTCTGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGcacaca > 2:1438700/1‑149 (MQ=255)
tctGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACAtt > 2:921888/1‑149 (MQ=255)
tctGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACAtt > 4:1040878/1‑149 (MQ=255)
tctGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACAtt > 4:1587876/1‑149 (MQ=255)
tctGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACAtt > 4:1599068/1‑149 (MQ=255)
tctGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACAtt > 2:1387360/1‑149 (MQ=255)
tGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTgcg‑c > 3:259694/1‑136 (MQ=255)
tGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTgcg‑c < 4:259694/136‑1 (MQ=255)
gAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCaa < 1:921888/149‑1 (MQ=255)
aaaGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAAt < 3:118186/149‑1 (MQ=255)
aaaGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAAt > 4:768024/1‑149 (MQ=255)
gTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGcc < 3:768024/149‑1 (MQ=255)
cAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGga < 1:611167/149‑1 (MQ=255)
ggATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGcacac > 4:357830/1‑134 (MQ=255)
gATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGagag > 3:30543/1‑149 (MQ=255)
aTCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGagc < 1:1438700/149‑1 (MQ=255)
tCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGCCCAAAGTGAAGAGCGGAAAATAATCCGCAGGCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGagca > 3:974622/1‑149 (MQ=255)
tCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGagca < 3:582506/149‑1 (MQ=255)
tCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGagca > 2:63645/1‑149 (MQ=255)
cGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGt < 3:597896/117‑1 (MQ=255)
cGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGt > 4:597896/1‑117 (MQ=255)
cGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGagca < 1:1467472/147‑1 (MQ=255)
gAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTa < 1:917451/112‑1 (MQ=255)
gAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGt > 2:998775/1‑116 (MQ=255)
gAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGcc > 3:1188397/1‑149 (MQ=255)
gAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGcc > 4:539374/1‑149 (MQ=255)
aaaTCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGt < 1:63645/149‑1 (MQ=255)
cGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGga < 3:1041157/135‑1 (MQ=255)
cGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGga > 4:1041157/1‑135 (MQ=255)
gACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATg > 1:471976/1‑149 (MQ=255)
gACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATg > 4:1713640/1‑149 (MQ=255)
aCCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGa < 3:1587876/149‑1 (MQ=255)
aCCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGa < 2:471976/149‑1 (MQ=255)
aCCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGa < 3:1040878/149‑1 (MQ=255)
aCCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGa > 4:500714/1‑149 (MQ=255)
ccGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGAc < 2:1212169/149‑1 (MQ=255)
ccGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGAc < 2:824100/149‑1 (MQ=255)
gcACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGt < 1:164364/134‑1 (MQ=255)
gcACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGAc > 3:782162/1‑141 (MQ=255)
gcACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCAGTGAATGAc < 4:782162/141‑1 (MQ=255)
gcACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGAGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGACGGAGAGCAGCCGt > 2:164364/1‑134 (MQ=255)
aCCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTc < 2:921194/149‑1 (MQ=255)
aCCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTc < 4:30543/149‑1 (MQ=255)
gcgcgTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑Ctt < 2:1391029/99‑1 (MQ=255)
aCCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATAATg > 2:936019/1‑83 (MQ=255)
aCCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATAATg < 1:936019/83‑1 (MQ=255)
ccAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCTGCGGGCGag > 4:469887/1‑148 (MQ=255)
cAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCTGCGGGCGagg < 3:469887/149‑3 (MQ=255)
aaaGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGaaaa < 1:1387360/149‑1 (MQ=255)
aaaGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGaaaa < 1:1871649/149‑1 (MQ=255)
aaaGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGaaaa < 3:729447/149‑1 (MQ=255)
aaaGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGaaaa < 3:554965/149‑1 (MQ=255)
aaaGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGaaaa < 1:1345896/149‑1 (MQ=255)
aaaGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGaaaa < 3:1599068/149‑1 (MQ=255)
aaGTGAAGAGCGAAAAATAATCCGCCGTCGTAGCTGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCCGCCGTGAATGACGCTATCCCTCGCACGCAGGCGAAAAc < 2:1254034/149‑1 (MQ=255)
gTGAAGAGCGGAAAATCATCCGCAGTCGGAGATGCCGGAGGGGCGCAACACACCCGCCGGCAATTCGCCCCATTATGGTGCG‑CTTGCACACCTTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAAccc < 4:974622/149‑1 (MQ=255)
gTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATAATGGTgcgaa < 2:1757652/84‑3 (MQ=255)
gagCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAg < 3:500714/149‑1 (MQ=255)
gagCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAg > 3:1382447/1‑149 (MQ=255)
gAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCt > 2:1063713/1‑149 (MQ=255)
tCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCt < 2:769477/141‑1 (MQ=255)
gCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTaa > 1:104521/1‑132 (MQ=255)
gCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTaa < 2:104521/132‑1 (MQ=255)
aGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTa < 3:147362/149‑1 (MQ=255)
aGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTa < 3:1127346/149‑1 (MQ=255)
aGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTa < 4:1188397/149‑1 (MQ=255)
gTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTa < 2:224963/148‑1 (MQ=255)
gTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTa > 1:224963/1‑148 (MQ=255)
gATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTa < 2:1577683/142‑1 (MQ=255)
gATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTa > 1:1577683/1‑142 (MQ=255)
aTGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGTGAGCAGCCGTGat < 4:1224960/86‑2 (MQ=255)
gggCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGa < 1:1250096/121‑1 (MQ=255)
gggCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGa > 2:1250096/1‑121 (MQ=255)
accacACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTGTCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTg < 2:1872875/141‑1 (MQ=255)
accacACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTGTCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTg > 1:1872875/1‑141 (MQ=255)
aagacacCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTGACCAAATc > 4:962037/4‑149 (MQ=255)
cacaCCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTaa < 4:1649092/105‑1 (MQ=255)
cacaCCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTaa > 3:1649092/1‑105 (MQ=255)
acacCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTACCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTGACCAAATCCTa < 3:1758/149‑1 (MQ=255)
ccgccgGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTGACCAAATCCTa < 1:302208/145‑1 (MQ=255)
ccgccgGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTGACCAAATCCTa > 2:302208/1‑145 (MQ=255)
agcGCACCATAATGGTGCGAATTGCACACATTCAATGCCGga > 2:1522626/3‑42 (MQ=14)
cGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGAcgccgc > 1:122462/1‑102 (MQ=255)
gCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGa < 3:37836/54‑1 (MQ=255)
cACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTGACCAAATCCTACGATGGTCAACATGCGGt > 2:1516488/1‑149 (MQ=255)
aCCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTGACCAAATCCTACGATGGTCAACATGCGGTg > 2:1671323/1‑149 (MQ=255)
cATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTGACCAAATCCTACGATGGTCAACATGCGGTGga > 2:1292373/1‑149 (MQ=255)
cATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTGACCAAATCCTACGATGGTCAACATGCGGTGga < 1:1611335/149‑1 (MQ=255)
cATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTGACCAAATCCTACGATGGTCAACATGCGGTGga < 1:1292373/149‑1 (MQ=255)
cATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTGACCAAATCCTACGATGGTCAACATGCGGTGga > 4:811196/1‑149 (MQ=255)
cATAATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGc > 1:34368/1‑63 (MQ=255)
cATAATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGc < 2:34368/63‑1 (MQ=255)
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TTCGTGCGAAGCTGTTCACTCTGAAAGTGCAGGATCCGAAAATCGACCGTGTGCGCACCCGCGCGTGGACCAAAGTGAAGAGCGGAAAATAATCCGCAGTCGTAGATGCCGGAGGGGCGCACCACACCCGCCGGCAATTCGCACCATTATGGTGCG‑CTTGCACACATTCAATGCCGGAGAGCAGCCGTGAATGACGCTATCCCTCGCCCGCAGGCGAAAACCCGTAAGGCGCTGACGCCGCTATTAGAAATCCGCAACCTGACCAAATCCTACGATGGTCAACATGCGGTGGATGA > NC_000913/894805‑895100
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
