Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A35 F9 I0 R1
|
1164 |
192.0 |
7567036 |
97.0% |
7340024 |
130.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,256,416 |
A→T |
100% |
intergenic (‑464/+305) |
ycgV ← / ← ychF |
putative adhesin/catalase inhibitor protein; ATPase, K+‑dependent, ribosome‑associated |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,256,416 | 0 | A | T | 98.7%
| 576.1
/ ‑1.7
| 152 | intergenic (‑464/+305) | ycgV/ychF | putative adhesin/catalase inhibitor protein; ATPase, K+‑dependent, ribosome‑associated |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base T (79/71); total (80/72) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.34e-01 |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 152 total aligned reads displayed.
CTAATTAGTTATGGGAATTTCGCTTGATGTATCTGCATAACAAAAACAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTACTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGAACACTTATGTCTTT > NC_000913/1256271‑1256558
|
cTAATTAGTTATGGGAATTTCGCTTGATGTATCTGCATAACAAAAACAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTg < 3:1316186/149‑1 (MQ=255)
aGTTATGGGAATTTCGCTTGATGTATCTGCATAACAAAAACAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATc < 3:757277/149‑1 (MQ=255)
tATGGGAATTTCGCTTGATGTATCTGCATAACAAAAACAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCAtt < 3:1086739/149‑1 (MQ=255)
tGGGAATTTCGCTTGATGTATCTGCATAACAAAAACAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCAtttt > 2:714588/1‑149 (MQ=255)
tGGGAATTTCGCTTGATGTATCTGCATAACAAAAACAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCAtttt > 2:294620/1‑149 (MQ=255)
gATGTATCTGCATAACAAAAACAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCat > 4:902985/1‑149 (MQ=255)
aTCTGCATAACAAAAACAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTgg > 2:545685/1‑149 (MQ=255)
tGCATAACAAAAACAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGc < 1:524749/149‑1 (MQ=255)
gCATAACAAAAACAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGGTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCg > 3:743380/1‑149 (MQ=255)
aaaaCAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAAt > 1:1435959/1‑149 (MQ=255)
aaaCAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAAtt < 4:462657/149‑1 (MQ=255)
aaaCAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAAtt < 1:294620/149‑1 (MQ=255)
aaCAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCt < 2:693528/121‑1 (MQ=255)
aaCAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCt > 1:693528/1‑121 (MQ=255)
cgcCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCt < 2:1435959/149‑1 (MQ=255)
gcCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCGTTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCtt > 3:1290210/1‑112 (MQ=255)
gcCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTc > 2:858771/1‑107 (MQ=255)
gcCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCtt < 4:1290210/112‑1 (MQ=255)
gcCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTg < 3:552265/131‑1 (MQ=255)
gcCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCtg > 4:770619/1‑149 (MQ=255)
gcCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCtg > 4:1627276/1‑149 (MQ=255)
gcCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTACTGGTTATCATTTTCAt < 2:633426/109‑1 (MQ=255)
ccATTTTTGCATTACTAATAGGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAAt > 2:1831645/1‑136 (MQ=255)
ccATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAAt < 1:1831645/136‑1 (MQ=255)
ccATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCtgt > 3:1159157/1‑149 (MQ=255)
tttttGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGaa > 3:1549934/1‑149 (MQ=255)
ttGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAggg < 4:1549934/149‑1 (MQ=255)
gCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAggggg < 3:902985/149‑1 (MQ=255)
tACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTg < 4:1737401/111‑1 (MQ=255)
tACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGAt > 2:697656/1‑130 (MQ=255)
taataaGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCAt > 2:1141488/1‑93 (MQ=255)
taataaGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGAtgt > 3:49323/1‑149 (MQ=255)
taataaGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTCTGCTTCTGGTTATCATTTTCAt < 1:1141488/93‑1 (MQ=255)
aataaGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGAtgtg > 2:1148123/1‑149 (MQ=255)
ataaGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGcc > 3:72309/1‑97 (MQ=255)
ataaGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGcc < 4:72309/97‑1 (MQ=255)
ataaGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATgtgt > 2:1081442/1‑149 (MQ=255)
taaGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTa < 1:714588/149‑1 (MQ=255)
taaGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTa < 1:1148123/149‑1 (MQ=255)
aaGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAg < 1:545685/149‑1 (MQ=255)
aaGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAg < 3:770619/149‑1 (MQ=255)
gAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGa < 4:64017/104‑1 (MQ=255)
gCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTa < 1:1486767/140‑1 (MQ=255)
gCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTa > 2:1486767/1‑140 (MQ=255)
aaaaaaCATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGAtgt > 1:623635/1‑135 (MQ=255)
aaaaaCATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATc > 4:1354219/1‑113 (MQ=255)
aaaaaCATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATc < 3:1354219/113‑1 (MQ=255)
aaaaCATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAAc < 3:862047/149‑1 (MQ=255)
cATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTAc < 1:1418637/149‑1 (MQ=255)
aTCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCAtt < 3:472650/67‑1 (MQ=255)
aTCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCAtt > 4:472650/1‑67 (MQ=255)
aTCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGc > 2:1225235/1‑91 (MQ=255)
aTCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGc > 4:1403099/1‑91 (MQ=255)
aTCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGc < 3:1403099/91‑1 (MQ=255)
aTCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGc < 1:1225235/91‑1 (MQ=255)
aTCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGAt > 4:533353/1‑106 (MQ=255)
aTCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGAt < 3:533353/106‑1 (MQ=255)
atatTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTtat > 4:1847646/1‑149 (MQ=255)
atatTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTtat > 2:1466166/1‑149 (MQ=255)
ttCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGGTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTATGATCAGCTGTGTAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATc > 3:375353/1‑149 (MQ=255)
ttCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATa < 1:1059025/130‑1 (MQ=255)
ttCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATa > 2:1059025/1‑130 (MQ=255)
ttCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACt > 2:458658/1‑138 (MQ=255)
ttCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACt < 1:458658/138‑1 (MQ=255)
aTTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGtt < 1:695817/141‑1 (MQ=255)
ttttGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGc < 3:1847646/149‑1 (MQ=255)
ttttGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGc < 1:1466166/149‑1 (MQ=255)
tCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCCTATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTAc < 2:1179363/130‑1 (MQ=255)
tCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTAc > 3:1820937/1‑130 (MQ=255)
tCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTAc > 1:1179363/1‑130 (MQ=255)
aaTGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAAttt < 3:1666388/82‑1 (MQ=255)
aaTGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAAttt > 4:1666388/1‑82 (MQ=255)
aaTGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATgaga > 4:299874/1‑149 (MQ=255)
tGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATg > 1:985070/1‑144 (MQ=255)
tGGGTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATg < 2:985070/144‑1 (MQ=255)
gggTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGatat > 2:1870142/1‑149 (MQ=255)
gggTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGatag > 4:1216907/1‑148 (MQ=255)
ggTTTTCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATc < 1:81770/149‑1 (MQ=255)
ttttCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATgag < 4:785274/142‑1 (MQ=255)
ttCTGGCCTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAACAACTTACGTTATATCACTGCTAATGAGATATCCGGc < 4:1159157/149‑1 (MQ=255)
ccTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGa < 1:1870142/149‑1 (MQ=255)
cTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAg > 2:1684584/1‑97 (MQ=255)
cTATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGaa < 4:375353/149‑1 (MQ=255)
tATCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGAac < 4:502446/149‑1 (MQ=255)
aTCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTa > 3:293464/1‑94 (MQ=255)
aTCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGAaca > 4:1147774/1‑149 (MQ=255)
tCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGAt < 2:379774/58‑1 (MQ=255)
tCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGAtgt < 4:988469/90‑1 (MQ=255)
tCGTTGTTATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGAtgt > 3:988469/1‑90 (MQ=255)
gttgttATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAAt < 2:527168/125‑1 (MQ=255)
gttgttATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGAACACtt > 3:1484590/1‑149 (MQ=255)
ttgttATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGAACACTTa > 4:91166/1‑149 (MQ=255)
gttATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGaa > 4:269058/1‑141 (MQ=255)
ttATTGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGAACACTTATGt < 3:990761/149‑1 (MQ=255)
ttGTGCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAAttt > 3:1631655/1‑55 (MQ=255)
tgtgCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGAACACTTATGTCttt < 1:1081442/149‑1 (MQ=255)
gtgCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGAACACTTATg < 2:208774/143‑1 (MQ=255)
gtgCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGAACACTTATg > 1:208774/1‑143 (MQ=255)
tgCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGat < 4:1078051/120‑1 (MQ=255)
tgCTTCTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGat > 3:1078051/1‑120 (MQ=255)
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CTAATTAGTTATGGGAATTTCGCTTGATGTATCTGCATAACAAAAACAATATGCGCCATTTTTGCATTACTAATAAGAAAAAGCAAAAAACATCGATATTCATTTTTGGTCAATGGGTTTTCTGGCCTATCGTTGTTATTGTGCTACTGGTTATCATTTTCATCTTGCCAGCATATTGGAGCGTGATCAATTTTGATCAGCTGTGAAGGGGGCTGATGTGTAGTGATACAAAAACTTACGTTATATCACTGCTAATGAGATATCCGGCATCTGAACACTTATGTCTTT > NC_000913/1256271‑1256558
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
