Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A35 F9 I0 R1
|
1164 |
192.0 |
7567036 |
97.0% |
7340024 |
130.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,180,043 |
C→T |
100% |
T408M (ACG→ATG) |
yegT → |
nucleoside transporter, low affinity |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,180,043 | 0 | C | T | 98.1%
| 766.5
/ 1.8
| 207 | T408M (ACG→ATG) | yegT | nucleoside transporter, low affinity |
| Reads supporting (aligned to +/- strand): ref base C (2/2); new base T (102/100); total (104/103) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.35e-01 |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
Only 100 of 207 total aligned reads displayed.
GATGATGGAAAAGATGTTCGCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTACGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCTTTGGCCACGCAGCCGCGTTAAA > NC_000913/2179897‑2180190
|
tgGAAAAGATGTTCGCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATc > 4:887700/1‑149 (MQ=255)
tgGAAAAGATGTTCGCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATc > 3:477600/1‑149 (MQ=255)
aaaGATGTTCGCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAgg > 2:1278249/1‑149 (MQ=255)
aaaGATGTTCGCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAgg > 2:968875/1‑149 (MQ=255)
gATGTTCGCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGt < 1:287328/147‑1 (MQ=255)
tGTTCGCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCgat > 3:669822/1‑149 (MQ=255)
ttCGCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCgatga > 4:1659914/1‑149 (MQ=255)
ttCGCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGCGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCgatga > 1:971205/1‑149 (MQ=255)
cGCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATc < 1:1047382/149‑1 (MQ=255)
gCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATcg > 2:533576/1‑149 (MQ=255)
gCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATcg > 4:607301/1‑149 (MQ=255)
ttATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATcgcg > 3:869845/1‑149 (MQ=255)
aTCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGat > 3:1828577/1‑149 (MQ=255)
aTCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGat < 4:1359644/149‑1 (MQ=255)
aTCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGat > 2:1386552/1‑149 (MQ=255)
aCCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGt > 2:453412/1‑149 (MQ=255)
aCCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGt < 4:935753/149‑1 (MQ=255)
ccGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGtt < 1:453412/149‑1 (MQ=255)
ccGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGtt < 1:533576/149‑1 (MQ=255)
ggTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTACGGCTATCAAGGTCGATGATCGCGATATTGCGTTGa < 1:958406/149‑1 (MQ=255)
gTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGac < 4:869188/149‑1 (MQ=255)
aaaCGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGacac > 2:1800846/1‑149 (MQ=255)
aCGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACaa > 4:31276/1‑149 (MQ=255)
aCGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACaa < 2:1135310/149‑1 (MQ=255)
aCGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACaa < 3:1542984/149‑1 (MQ=255)
aCGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTCTACCGGGAATCCGAATACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACaa < 3:717780/149‑1 (MQ=255)
ggACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAgg < 1:1356738/149‑1 (MQ=255)
gactgactTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGa > 3:1363920/1‑141 (MQ=255)
gactgactTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAggg < 3:327841/149‑1 (MQ=255)
gactgactTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCCTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGa < 4:1363920/141‑1 (MQ=255)
tgactTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGa > 1:1574222/1‑138 (MQ=255)
tgactTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGaa > 4:132441/1‑149 (MQ=255)
gactTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAg < 4:222825/149‑1 (MQ=255)
actTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGt > 2:635600/1‑149 (MQ=255)
tttCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGc > 3:1673278/1‑102 (MQ=255)
tttCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGc < 4:1673278/102‑1 (MQ=255)
tttCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATcgc > 4:664170/1‑121 (MQ=255)
tttCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTa > 1:66468/1‑149 (MQ=255)
tttCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTa > 3:1090232/1‑149 (MQ=255)
ttCAACTGGTACGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTaa > 3:116468/1‑149 (MQ=255)
tCAACTGGTCCGGGATGTGGTCTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTTTTTATTTTCTTCCGGAAATCCGAAAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTaaa < 3:1845507/149‑1 (MQ=255)
tCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTaaa < 4:559126/149‑1 (MQ=255)
aaCTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATg > 3:642692/1‑149 (MQ=255)
aaCTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATg > 2:1476164/1‑149 (MQ=255)
aCTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATc > 2:1657215/1‑114 (MQ=255)
tCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACa > 2:1761148/1‑149 (MQ=255)
gggATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGaa < 1:1386552/149‑1 (MQ=255)
gggATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGaa < 3:1659914/149‑1 (MQ=255)
gggATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGaa < 4:670789/149‑1 (MQ=255)
gATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGa > 3:290110/1‑139 (MQ=255)
tgGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGt > 1:1185027/1‑146 (MQ=255)
gACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCga > 1:907005/1‑93 (MQ=255)
gACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATtct > 1:1853778/1‑149 (MQ=255)
aCTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATtctc < 1:1761148/149‑1 (MQ=255)
cTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCg < 2:1045736/149‑1 (MQ=255)
tttCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCgg > 4:484163/1‑149 (MQ=255)
ttCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGt > 3:566704/1‑149 (MQ=255)
ggTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTa < 3:1280046/149‑1 (MQ=255)
gatgatTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATgg > 4:1075122/1‑149 (MQ=255)
atTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGaa < 3:1450591/122‑1 (MQ=255)
atTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGaa > 4:1450591/1‑122 (MQ=255)
atTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAg > 4:1026806/1‑149 (MQ=255)
ccATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGt < 1:1268176/87‑1 (MQ=255)
cATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGaaa > 4:77482/1‑111 (MQ=255)
cATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGaaa < 3:77482/111‑1 (MQ=255)
ttATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAATGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAg > 1:1816127/1‑149 (MQ=255)
ttATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAg > 2:415204/1‑149 (MQ=255)
tATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAgg < 1:635600/149‑1 (MQ=255)
aTCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAggg < 1:415204/149‑1 (MQ=255)
ccGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAg < 2:1584275/87‑1 (MQ=255)
tGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCTAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTa < 4:1426286/126‑1 (MQ=255)
tGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCTAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTa > 3:1426286/1‑126 (MQ=255)
tGTTCATGATTTTTTTCCGCGAATCCGACAGCGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATgg < 1:1450149/149‑1 (MQ=255)
tGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGa < 2:1102497/95‑1 (MQ=255)
tGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGa > 1:1102497/1‑95 (MQ=255)
ttCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGtt > 2:1226806/1‑71 (MQ=255)
ttCATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAggg > 3:1354841/1‑137 (MQ=255)
ttCATGATTTTATTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATgggg > 1:1619658/1‑149 (MQ=255)
cATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGAt > 4:112522/1‑149 (MQ=255)
cATGATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGAt < 4:1828577/149‑1 (MQ=255)
gATTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATggg > 2:340832/1‑120 (MQ=255)
aTTTTTTTCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGa > 2:1828761/1‑67 (MQ=255)
ttttttCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTc > 1:1022695/1‑149 (MQ=255)
ttCCGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATg > 2:912997/1‑134 (MQ=255)
ccGCGAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCt > 4:1626051/1‑149 (MQ=255)
gcgAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCttt > 1:756489/1‑149 (MQ=255)
gAATCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCTTTgg < 3:535318/149‑1 (MQ=255)
aaTCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGc > 2:773716/1‑111 (MQ=255)
aaTCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCTTTGGc > 1:1881394/1‑149 (MQ=255)
aaTCCGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCTTTGGc < 3:1026806/149‑1 (MQ=255)
ccGACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCtt < 3:163384/97‑1 (MQ=255)
gACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCTTTGGCCACGc > 4:473149/1‑149 (MQ=255)
gACAACGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCTTTGGCCACGc > 4:1222808/1‑149 (MQ=255)
aaCGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCTTTGGCCACGCAGc > 1:79680/1‑149 (MQ=255)
aCGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCTTTGGCCACGCAGcc < 3:90324/149‑1 (MQ=255)
aCGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCTTTGGCCACGCAGcc > 4:1387018/1‑149 (MQ=255)
cGAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCg > 4:148127/1‑130 (MQ=255)
cGAAATTATGGCTAACAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCg < 3:148127/130‑1 (MQ=255)
gAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCTTTGGCCAc > 3:805977/1‑141 (MQ=255)
gAAATTATGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCTTTGGCCAc < 4:805977/141‑1 (MQ=255)
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GATGATGGAAAAGATGTTCGCTTATCAGGAACCGGTAAACGGACTGACTTTCAACTGGTCCGGGATGTGGACTTTCGGCGCGGTGATGATTGCCATTATCGCCGTGCTGTTCATGATTTTTTTCCGCGAATCCGACAACGAAATTACGGCTATCAAGGTCGATGATCGCGATATTGCGTTGACACAAGGGGAAGTTAAATGAAAACAGAACGTATTCTCGGTGCTCTTTATGGGCAGGCGTTAGGGGATGCGATGGGGATGCCCTCCGAGCTTTGGCCACGCAGCCGCGTTAAA > NC_000913/2179897‑2180190
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
