Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F106 I0 R1
|
598 |
170.7 |
6333854 |
98.1% |
6213510 |
139.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,901,038:1 |
+T |
5.8% |
coding (548/1557 nt) |
yoaE ← |
putative membrane protein/conserved protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,901,038 | 1 | . | T | 5.8%
| 729.7
/ 41.2
| 172 | coding (548/1557 nt) | yoaE | putative membrane protein/conserved protein |
| Reads supporting (aligned to +/- strand): ref base . (81/81); new base T (4/6); total (85/87) |
| Fisher's exact test for biased strand distribution p-value = 7.47e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.51e-01 |
Only 100 of 186 total aligned reads displayed.
ACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACGAGAAGACGGCGTCAAGGA > NC_000913/1900890‑1901185
|
aCGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTgg > 1:1001310/1‑149 (MQ=255)
aCGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTgg < 2:150220/149‑1 (MQ=255)
cgcgCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTgg‑g < 3:1217420/149‑1 (MQ=255)
cgcgCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTgg‑g < 1:280475/149‑1 (MQ=255)
cgcgCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTgg‑g < 1:1537851/149‑1 (MQ=255)
gcgcAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTgg‑gg > 2:964730/1‑149 (MQ=255)
cgcAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCTTGG‑GGt < 2:1128088/149‑1 (MQ=255)
gcAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTg > 2:374672/1‑149 (MQ=255)
gcAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTg > 1:947705/1‑149 (MQ=255)
aaTCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCt > 1:250549/1‑149 (MQ=255)
aaTCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCt < 1:517919/149‑1 (MQ=255)
aTCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGATAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACC‑CCACGGTGGTGGTGCtc < 2:1312889/149‑2 (MQ=255)
tCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTgg > 2:591214/1‑149 (MQ=255)
tCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTgg > 2:1568053/1‑149 (MQ=255)
tGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGtt < 3:1051546/149‑1 (MQ=255)
gTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTaa > 4:1565624/1‑149 (MQ=255)
gTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACC‑CCACGGTGGTGGTGCtctgtct < 1:1295324/149‑7 (MQ=37)
aaCACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGaa < 2:1250111/149‑1 (MQ=255)
aaCACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGaa > 1:978173/1‑149 (MQ=255)
acacTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAAt < 3:1188990/149‑1 (MQ=255)
cacTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATc < 4:1439607/149‑1 (MQ=255)
cTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATcgc < 1:1219948/149‑1 (MQ=255)
cTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATcgc < 2:1265413/149‑1 (MQ=255)
ttCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACC‑CCACGGTGGTGGTGCtct < 1:394842/136‑3 (MQ=37)
ttCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCGCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATcgcg < 1:1101291/149‑1 (MQ=255)
gatCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAAc < 2:971710/132‑1 (MQ=255)
gatCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTc < 4:1469884/142‑1 (MQ=255)
gatCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTc > 3:1469884/1‑142 (MQ=255)
gatCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGtt < 3:845751/149‑1 (MQ=255)
gatCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGtt < 3:1401009/149‑1 (MQ=255)
atCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGttt < 2:1339144/149‑1 (MQ=255)
atCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGttt < 4:83340/149‑1 (MQ=255)
atCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGttt < 2:686360/149‑1 (MQ=255)
aGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGcc < 3:781793/149‑1 (MQ=255)
gCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCa < 4:699537/149‑1 (MQ=255)
gCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAACACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCa > 4:1169301/1‑149 (MQ=255)
aaTCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCa > 4:1229748/1‑149 (MQ=255)
gCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAAc < 1:1193792/149‑1 (MQ=255)
aTACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGTGGTTTGGATGCCAGCAACATAACCg > 1:837406/1‑149 (MQ=255)
aCAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGcc < 4:178554/149‑1 (MQ=255)
aGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGa > 2:907075/1‑128 (MQ=255)
ggTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGTACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATc < 1:1591062/149‑1 (MQ=255)
gTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCg > 3:1387253/1‑149 (MQ=255)
tttCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCTCCATCGCaa > 1:1259241/1‑146 (MQ=255)
tttCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCa > 2:1008594/1‑149 (MQ=255)
gttCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCCCCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCACCATCGCAATCa > 4:1360982/2‑149 (MQ=255)
ggAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGTGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTAc < 2:837406/149‑1 (MQ=255)
ggAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTAc < 3:533265/149‑1 (MQ=255)
aTGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTAccgc < 4:908446/149‑1 (MQ=255)
tgtgGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTAccgcc > 4:344163/1‑149 (MQ=255)
tgGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACcgccgc < 1:1008594/149‑1 (MQ=255)
gaaaccgaaaccTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAAc > 1:824966/1‑87 (MQ=255)
gaaaccgaaaccTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAAc < 2:824966/87‑1 (MQ=255)
aaaccgaaaccTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTgg‑g < 1:209106/74‑1 (MQ=255)
aaaccgaaaccTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTgg‑g > 2:209106/1‑74 (MQ=255)
aaccgaaaccTTCTGCCACCAGACTCAGACCAGTCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCcatc > 3:858813/1‑149 (MQ=255)
aaccgaaaccTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCcatc < 1:374672/149‑1 (MQ=255)
cgaaaccTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCatcatc > 4:211576/1‑149 (MQ=255)
gaaaccTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCAtcatca > 4:902671/1‑149 (MQ=255)
ttCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCa > 3:690450/1‑149 (MQ=255)
ccaccaGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATgg < 2:17354/149‑1 (MQ=255)
ccaccaGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATgg < 4:1049365/149‑1 (MQ=255)
accaGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGtt < 2:345989/149‑1 (MQ=255)
ccaGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGCTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTa > 1:78629/1‑149 (MQ=255)
caGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTaa < 1:663391/149‑1 (MQ=255)
caGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTaa < 3:368429/149‑1 (MQ=255)
gACTCAGACCAATCATTATCAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAAcc < 2:700087/149‑1 (MQ=255)
tCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGttt > 4:411248/1‑79 (MQ=255)
tCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGttt < 3:411248/79‑1 (MQ=255)
tCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATgg > 4:473320/1‑140 (MQ=255)
tCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATgg < 3:473320/140‑1 (MQ=255)
aCCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTa < 1:1378407/149‑1 (MQ=255)
cAATCATTATCAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTAc > 1:1366689/1‑109 (MQ=255)
cAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTATCGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTAc < 2:1366689/109‑1 (MQ=255)
aTCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCa > 4:1029185/1‑103 (MQ=255)
aTTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGCTAACCAGCCCTACTGCGGt > 3:1247116/1‑149 (MQ=255)
ttAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGc < 2:723421/88‑1 (MQ=255)
ttAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGc > 1:723421/1‑88 (MQ=255)
tAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTaa > 4:43917/1‑149 (MQ=255)
aCAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAAtt > 3:628048/1‑149 (MQ=255)
aCAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAAtt < 1:623752/149‑1 (MQ=255)
ggAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAAcc < 2:769851/80‑1 (MQ=255)
ggAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAAcc > 1:769851/1‑80 (MQ=255)
ggAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTAcc < 1:1370631/149‑1 (MQ=255)
ggAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTAcc < 2:21956/149‑1 (MQ=255)
tCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATcc > 4:495966/1‑149 (MQ=255)
tCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATcc > 4:1531683/1‑149 (MQ=255)
agacagaGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCATCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCaa > 1:719336/1‑149 (MQ=255)
agacagaGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCaa > 3:72580/1‑149 (MQ=255)
cagaGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACga < 2:523168/149‑1 (MQ=255)
agCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACGagaa < 4:72580/149‑1 (MQ=255)
accaccaccGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACGAGAAGAc > 2:140219/1‑149 (MQ=255)
ccaccaccGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCATCATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACGAGAAGACg > 1:1579259/1‑149 (MQ=255)
caccaccGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACGAGAAGACgg > 3:262456/1‑149 (MQ=255)
accaccGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACGAGAAGACGGc > 1:917842/1‑149 (MQ=255)
caccGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACGAGAAGACGGCGt > 2:268192/1‑149 (MQ=255)
gTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACGAGAAGACGGCGTCAAg < 3:1531683/149‑1 (MQ=255)
gg‑ggTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACGAGAAGACGGCGTCAAGGa < 4:84813/149‑1 (MQ=255)
g‑ggTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACGAGAAGACGGCGTCAAGGa < 2:86865/148‑1 (MQ=255)
g‑ggTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACGAGAAGACGGCGTCAAGGa > 1:86865/1‑148 (MQ=255)
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ACGCGCAATCTGGTTAAACACTTCGATGATGATCGAGAAGCCAATCGCGGCATACAGGTAACCTTTCGGAATGTGGAAACCGAAACCTTCTGCCACCAGACTCAGACCAATCATTAACAGGAAGCTCAGACAGAGCACCACCACCGTGG‑GGTGCTGGTTAACGAATCGCGTCAGCGGTTTGGATGCCAGCAACATAACCGCCATCGCAATCACTACCGCCGCCATCATCACCGGCAGATGGTTAACCATCCCTACTGCAGTAATTACCGCATCCAACGAGAAGACGGCGTCAAGGA > NC_000913/1900890‑1901185
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
