Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A83 F1 I1 R1
|
17 |
39.7 |
2446701 |
98.6% |
2412447 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,202,203 |
Δ1 bp |
coding (357/825 nt) |
iclR ← |
DNA‑binding transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,202,202 | 0 | C | . | 100.0%
| 189.3
/ NA
| 39 | coding (358/825 nt) | iclR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (17/22); total (17/22) |
GCATCAGATGCGTACACTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGG > REL606/4202127‑4202272
|
gCATCAGATGCGTACACTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCAATATTGAc > 2:31029/1‑76 (MQ=255)
gCATCAGATGCGTACACTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAACACCGCCATATTGAc > 2:31034/1‑76 (MQ=255)
tCAGATGCGTACACTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGAcgtt > 2:495965/1‑73 (MQ=255)
gATGCGTACACTGTACCGGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCg < 2:247853/76‑1 (MQ=255)
aTGCGTACACTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGc > 1:504894/1‑76 (MQ=255)
gCGTACACTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCa > 1:214026/1‑76 (MQ=255)
gCGTACACTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCa < 1:951282/76‑1 (MQ=255)
gTACACTGTACCGGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGa < 2:767333/76‑1 (MQ=255)
acacTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGAct > 2:353133/1‑76 (MQ=255)
acacTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGAct < 1:286241/76‑1 (MQ=255)
acacTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGAct > 2:176059/1‑76 (MQ=255)
cTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCtt > 1:941168/1‑76 (MQ=255)
cTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCtt > 1:883411/1‑76 (MQ=255)
tGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTc > 2:1059625/1‑76 (MQ=255)
gTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTcc > 2:382980/1‑76 (MQ=255)
gTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTcc > 2:659723/1‑76 (MQ=255)
gTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTcc > 2:206060/1‑76 (MQ=255)
aCCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCAt < 1:529710/76‑1 (MQ=255)
tGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTaa < 2:797185/76‑1 (MQ=255)
ggTCGATAATAATCGCTTCGTGATCGTTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTaaa < 2:766014/76‑1 (MQ=255)
cGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTg > 2:537521/1‑76 (MQ=255)
aaaataatCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTGGCCAGACTCTTCCATTAAATTgcg < 1:755956/74‑1 (MQ=255)
taataaTCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTgcgc < 1:201548/76‑1 (MQ=255)
atattCGTTTCTTGTTCGTTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCTTTAAATTGCGCAg < 2:313699/76‑1 (MQ=255)
ataatCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAg < 1:398192/76‑1 (MQ=255)
aatCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGa > 2:557018/1‑76 (MQ=255)
atCTCTTCTTGTTCGTTTTGTTCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGAt < 2:342731/76‑1 (MQ=255)
gtgtTCGTTTTGTTCAGGCTCCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGaa < 1:284448/76‑1 (MQ=255)
gTGATCGCTTGGACCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGaa < 2:111866/76‑1 (MQ=255)
tGATCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAAc < 1:271026/76‑1 (MQ=255)
aTCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACaa < 1:961017/76‑1 (MQ=255)
aTCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACaa < 2:1200966/76‑1 (MQ=255)
aTCGCTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACaa > 1:503256/1‑76 (MQ=255)
cTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGc > 1:760744/1‑76 (MQ=255)
cTTTGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGc > 1:1027429/1‑76 (MQ=255)
tttGATCAAGCCCCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCt < 2:327580/76‑1 (MQ=255)
tggATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCTa < 2:13848/74‑1 (MQ=255)
tGATCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCTaa < 1:476192/76‑1 (MQ=255)
tGACCAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCTaa < 1:476206/76‑1 (MQ=255)
gATCAAGCCCCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCTAAc < 2:87487/76‑1 (MQ=255)
cAAGCACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCTAACaaa > 2:700548/1‑76 (MQ=255)
cACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTAc < 2:547513/76‑1 (MQ=255)
cACCGCCATATTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTAc < 2:1100985/76‑1 (MQ=255)
atatTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTg > 1:1194595/1‑76 (MQ=255)
tatTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTgg < 1:455592/76‑1 (MQ=255)
tatTGA‑CGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTgg > 1:1115228/1‑76 (MQ=255)
|
GCATCAGATGCGTACACTGTACCTGGTCGATAATAATCGCTTCGTGATCGCTTTGATCAAGCACCGCCATATTGACCGTTTCGCCAGACTCTTCCATTAAATTGCGCAGGATAGGGTGAACAATCGCTAACAAATTACGGCTCTGG > REL606/4202127‑4202272
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
