Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A82 F1 I1 R1
|
16 |
52.8 |
3323890 |
97.1% |
3227497 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,531,179 |
A→C |
V97G (GTG→GGG) |
rpoH ← |
RNA polymerase sigma factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,531,179 | 0 | A | C | 100.0%
| 225.7
/ NA
| 53 | V97G (GTG→GGG) | rpoH | RNA polymerase sigma factor |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (34/19); total (34/19) |
AGTTACGCAGGACGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCACTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATCCGCCTGTGGCA > REL606/3531108‑3531251
|
aGTTACGCAGGACGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTc > 1:107529/1‑76 (MQ=255)
ttACGCAGGACGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCg < 1:159452/76‑1 (MQ=255)
tACGCAGGACGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCgg > 2:230571/1‑76 (MQ=255)
aCGCAGGACGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCggg > 2:73554/1‑76 (MQ=255)
aCGCAGGACGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCggg > 2:199135/1‑76 (MQ=255)
cGCAGGACGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGt < 2:997274/76‑1 (MQ=255)
cGCAGGACGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGt < 2:581145/76‑1 (MQ=255)
cGCAGGACGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGt < 1:490848/76‑1 (MQ=255)
gCAGGACGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGtt < 2:147554/76‑1 (MQ=255)
aCGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAAc < 1:456989/76‑1 (MQ=255)
cGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACg > 1:545031/1‑76 (MQ=255)
gTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACgg > 1:922436/1‑76 (MQ=255)
aTTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGCTAAAACGgcg > 2:762391/1‑76 (MQ=255)
tGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTg > 1:1609765/1‑76 (MQ=255)
ggATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGc > 1:559331/1‑76 (MQ=255)
gATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCt > 2:623177/1‑76 (MQ=255)
aTCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCtt > 1:160722/1‑76 (MQ=255)
ctctGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTtc > 2:1511011/1‑76 (MQ=255)
tctGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTtca > 1:1204828/1‑76 (MQ=255)
gCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTtcatca < 1:216593/76‑1 (MQ=255)
gCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTtcatca > 1:811053/1‑76 (MQ=255)
cTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAg < 2:966389/76‑1 (MQ=255)
cTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAg < 2:231249/76‑1 (MQ=255)
ttGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGc > 1:488611/1‑76 (MQ=255)
ttGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGc > 1:1286897/1‑76 (MQ=255)
tGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGcc > 1:1584249/1‑76 (MQ=255)
gATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCg > 1:1049182/1‑76 (MQ=255)
gATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCg < 2:792246/76‑1 (MQ=255)
ccAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATg > 1:1151391/1‑76 (MQ=255)
cAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGt < 1:1607111/76‑1 (MQ=255)
cAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGt > 2:1356425/1‑76 (MQ=255)
cAGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGt < 2:16616/76‑1 (MQ=255)
aGTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGtt < 2:559610/76‑1 (MQ=255)
gTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCATTGCTTTCATCAGGCCGATGTTa < 2:1626223/76‑1 (MQ=255)
gTGAACGGCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTa < 1:992981/76‑1 (MQ=255)
gCGAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCt < 1:516051/76‑1 (MQ=255)
gAAGGAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGa > 2:1160649/1‑76 (MQ=255)
ggAGACCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATc > 1:142633/1‑76 (MQ=255)
gagaCCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCa > 1:558289/1‑76 (MQ=255)
gagaCCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCa > 1:604080/1‑76 (MQ=255)
agaCCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCaa > 1:666409/1‑76 (MQ=255)
agaCCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCaa > 2:1360970/1‑76 (MQ=255)
gaCCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAACCaaa > 2:556680/1‑76 (MQ=255)
aCCAGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAAt < 1:1329875/76‑1 (MQ=255)
aGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATccn < 1:1032991/76‑2 (MQ=255)
aGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATCCg > 1:93204/1‑76 (MQ=255)
aGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATCCg > 1:1189678/1‑76 (MQ=255)
aGGCGCACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATCCg > 1:430298/1‑76 (MQ=255)
cgcACACCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATCCGCCt > 2:565495/1‑76 (MQ=255)
cacaCCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATCCGCCtgt > 2:1221891/1‑76 (MQ=255)
cacCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATCCGCCTGTgg > 2:328172/1‑76 (MQ=255)
cacCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATCCGCCTGTgg < 2:560798/76‑1 (MQ=255)
cacCCCCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATCCGCCTGTgg > 2:5792/1‑76 (MQ=255)
ccccCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATCCGCCTGTGGCa < 1:1580176/76‑1 (MQ=255)
ccccCTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATCCGCCTGTGGCa < 1:938393/76‑1 (MQ=255)
|
AGTTACGCAGGACGTATTCGTGGATCTCTGCTTTGATCCAGTGAACGGCGAAGGAGACCAGGCGCACACCCACTTCCGGGTTAAAACGGCGCACTGCTTTCATCAGGCCGATGTTACCTTCCTGAATCAAATCCGCCTGTGGCA > REL606/3531108‑3531251
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
