breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	318,568	T→C	Q140Q (CAA→CAG)	yahN ←	neutral amino‑acid efflux system
RA	1,304,826	G→A	Q472* (CAA→TAA)	cls ←	cardiolipin synthetase
RA	1,329,516	C→T	H33Y (CAC→TAC)	topA →	DNA topoisomerase I
RA	1,689,712	(C)6→5	intergenic (+360/‑251)	nth → / → ydgR	DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/putative tripeptide transporter permease
JC	1,733,297	(CGTATGAA)1→2	coding (333/1413 nt)	pykF →	pyruvate kinase
RA	2,193,779	G→T	L143I (CTT→ATT)	yeiB ←	conserved inner membrane protein
RA	2,511,637	A→G	intergenic (+101/‑438)	acrD → / → yffB	aminoglycoside/multidrug efflux system/hypothetical protein
RA	3,531,179	A→C	V97G (GTG→GGG)	rpoH ←	RNA polymerase sigma factor
RA	3,762,741	A→T	K662I (AAA→ATA)	spoT →	bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA	3,875,632	(T)7→8	intergenic (‑66/+287)	glmU ← / ← atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
MC JC	3,894,997	Δ6,934 bp	IS150‑mediated	rbsD–[yieO]	rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]
RA	3,928,260	T→A	I15N (ATC→AAC)	rho →	transcription termination factor Rho
JC	4,097,038	(AGCAAGGGAGC)1→2	coding (535/846 nt)	glpF ←	glycerol facilitator
RA	4,180,200	T→G	V8G (GTG→GGG)	yjaH →	hypothetical protein
RA	4,404,055	T→A	I21N (ATC→AAC)	rpsR →	30S ribosomal protein S18
JC JC	4,524,522	IS186 (+) +6 bp	coding (494‑499/549 nt)	fimA →	major type 1 subunit fimbrin (pilin)