breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	REL606	1,747,903	0	G	T	43.8%	93.7 / 127.1	89	A8S (GCA→TCA)	ydiL	hypothetical protein
*	REL606	1,004,106	0	A	C	40.8%	85.2 / 10.8	49	intergenic (‑32/+570)	ompF/asnS	outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase
*	REL606	1,795,650	0	A	C	37.7%	94.3 / 17.4	53	V39G (GTG→GGG)	celF	cryptic phospho‑beta‑glucosidase, NAD(P)‑binding
*	REL606	1,882,526	0	T	G	34.6%	78.1 / 12.5	52	I21S (ATT→AGT)	manZ	mannose‑specific enzyme IID component of PTS
*	REL606	3,492,082	0	T	G	34.1%	87.3 / 10.9	44	V490G (GTG→GGG)	glpD	sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding
*	REL606	1,484,105	0	A	G	29.4%	57.9 / 14.6	34	G55G (GGA→GGG)	ydcU	predicted spermidine/putrescine transporter subunit
*	REL606	4,396,513	0	C	G	23.5%	88.5 / 10.3	34	S32S (TCG→TCC)	yjfQ	DNA‑binding transcriptional dual regulator
*	REL606	2,296,329	0	A	C	22.6%	171.9 / 12.2	62	intergenic (‑149/‑66)	inaA/yfaH	hypothetical protein/hypothetical protein

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	3737856 =	44 (0.840)	3 (0.060)	3/136	6.7	6.6%	intergenic (‑30/+16)	waaL/waaV	Lipid A‑core, surface polymer ligase/putative beta1,3‑glucosyltransferase
	?	REL606	3738065 =	45 (0.950)					coding (791/984 nt)	waaV	putative beta1,3‑glucosyltransferase
*	?	REL606	2038688 =	16 (0.310)	5 (0.100)	3/138	6.8	25.8%	coding (261/822 nt)	wbbB	putative glycosyltransferase WbbB
	?	REL606	2038966 =	14 (0.290)					coding (729/747 nt)	wbbA	putative glycosyltransferase WbbA