Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A136 F1 I1 R1
|
21 |
250.8 |
15742942 |
95.7% |
15065995 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
2,681,614 |
IS150 (–) +3 bp |
coding (247‑249/897 nt) |
ECB_02512 → |
conserved hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2681614 = | 6 (0.030) | 243 (1.030) |
96/146 |
0.6 |
97.5% |
coding (247/897 nt) |
ECB_02512 |
conserved hypothetical protein |
| ? | REL606 |
= 2775877 |
NA (NA) | noncoding (1/1443 nt) |
IS150 |
repeat region |
| * |
? |
REL606 |
= 2681616 | 6 (0.030) | 209 (0.860) |
94/150 |
0.8 |
97.1% |
coding (249/897 nt) |
ECB_02512 |
conserved hypothetical protein |
| ? | REL606 |
= 3894996 |
NA (NA) | noncoding (1443/1443 nt) |
IS150 |
repeat region |
Only 100 of 253 total aligned reads displayed.
ATGTTCTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACAtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2681688‑2681614
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACC < REL606/2775877‑2775812
ATGTTCTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACAT > 1:5546609/1‑76
ATGTTCTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACAT > 1:4680318/1‑76
ATGTTCTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACAT > 1:7109455/1‑76
TGTTCTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATG > 1:5304364/1‑76
TGTTCTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATG < 1:7620160/76‑1
TTCTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTA < 1:2669904/76‑1
TTCTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTA > 2:3446573/1‑76
TCTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTAC < 1:1939349/76‑1
CTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACT > 1:1372976/1‑76
CTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACT < 1:1147371/76‑1
CTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACT < 1:4449611/76‑1
TTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTG < 2:7016580/76‑1
TTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTG < 2:3679470/76‑1
TTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTG > 1:5773047/1‑76
TCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGC < 1:907808/76‑1
AACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCAC < 2:6650381/76‑1
AACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCAC > 1:7658387/1‑76
AACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCAC < 2:2252772/76‑1
AACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCAC < 2:3179382/76‑1
ACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACC > 2:4719836/1‑76
ACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACC > 2:5436047/1‑76
CTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCC > 2:5501840/1‑76
CTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCC < 2:3295195/76‑1
TACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGNACCCA < 2:3009995/76‑1
TACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCA < 1:6353553/76‑1
CATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATT > 2:3594762/1‑76
ATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTT > 2:1598879/1‑76
ATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTT > 1:580427/1‑76
TTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTT < 1:2492438/76‑1
TTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTT < 2:2163066/76‑1
TTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTG > 2:2580898/1‑76
TTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTG > 1:6436494/1‑76
TATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGT > 1:3720638/1‑76
TATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGT > 1:6126359/1‑76
TATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGT > 1:1494470/1‑76
TATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGT > 1:1199139/1‑76
TATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGT > 2:128203/1‑76
TATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTG > 1:2711869/1‑76
TATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTG > 2:1401577/1‑76
TATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTG > 1:1579890/1‑76
ATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGG < 2:4325427/76‑1
ATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGG > 1:3510790/1‑76
ATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGG < 1:337736/76‑1
ATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGG > 1:304638/1‑76
ATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGG > 1:6840248/1‑76
GATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGAC > 1:5005368/1‑76
GATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGAC < 1:183107/76‑1
ATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACG > 1:648118/1‑76
ATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACG < 1:6323910/76‑1
TTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGA > 1:1033966/1‑76
TCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGAT > 1:6228034/1‑76
TCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGAT < 2:4853410/76‑1
ACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGA < 1:7355447/76‑1
TTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAA > 1:5966679/1‑76
TTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAA < 2:5731238/76‑1
TTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAA < 1:89059/76‑1
TTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAA > 1:1016926/1‑76
TTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGG > 1:4009884/1‑76
TTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGA < 2:98902/76‑1
TTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGA > 2:1084948/1‑76
TTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGA < 1:2665583/76‑1
TGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAA < 1:7441666/76‑1
TGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAA < 2:818132/76‑1
GTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT > 1:3253148/1‑76
GTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT > 2:3816692/1‑76
GTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < 1:5468095/76‑1
GTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT > 2:3081890/1‑76
GTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < 2:5776920/76‑1
GTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < 1:7044020/76‑1
TTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:4316466/76‑1
TTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA > 2:6035958/1‑76
TTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 2:4238850/76‑1
TAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG > 2:291617/1‑76
TAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG > 1:4971425/1‑76
TGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA < 1:4600069/76‑1
TGAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA > 2:4574123/1‑76
TGAAAGCATCACCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTA > 1:2184110/1‑76
GAAAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > 1:5510932/1‑76
AAGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA < 2:386734/76‑1
AGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < 2:2408737/76‑1
AGCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < 1:4230638/76‑1
GCATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG < 1:2759982/76‑1
CATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGT < 1:5116143/76‑1
ATCATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTC < 1:1744014/76‑1
CATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAA < 1:6728620/76‑1
ATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAA < 2:7509594/76‑1
ATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAA > 2:7292547/1‑76
ATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAA < 1:2820633/76‑1
ATCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAA < 2:6237858/76‑1
TCTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAG < 1:5400033/76‑1
CTATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGC < 2:6371030/76‑1
TATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCC > 2:234508/1‑76
TATGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCC < 2:5299677/76‑1
TGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAA < 1:714938/76‑1
TGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAA < 2:5980631/76‑1
TGCTCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAA < 2:5218744/76‑1
TCGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAAT > 2:7657917/1‑76
CGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA < 2:1753580/76‑1
CGAAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA > 2:117884/1‑76
AAAGTATACATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACC > 1:5927585/1‑76
ATGTTCTTCAACTACATTTATATGATTCACTTGTTTGTTAGGAGTGAAAGCATCATCTATGCTCGAAAGTATACAtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2681688‑2681614
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACC < REL606/2775877‑2775812
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
