mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC JC | 16,989 | IS150 (+) +4 bp | intergenic (‑31/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| RA | 649,601 | T→C | I401V (ATC→GTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| RA | 711,401 | A→G | D58G (GAT→GGT) | ybfA → | hypothetical protein |
| JC JC | 1,182,773 | IS150 (+) +3 bp | intergenic (+41/+19) | ycfJ → / ← ycfQ | hypothetical protein/predicted DNA‑binding transcriptional regulator |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 1,995,676 | (C)8→9 | intergenic (+103/+351) | yeeN → / ← asnW | hypothetical protein/tRNA‑Asn |
| RA | 2,131,466 | (A)9→8 | intergenic (‑125/+175) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| JC JC | 2,681,614 | IS150 (–) +3 bp | coding (247‑249/897 nt) | ECB_02512 → | conserved hypothetical protein |
| JC JC | 3,015,771 | IS150 (–) +3 bp | coding (1192‑1194/1677 nt) | ECB_02816 → | KpsD protein |
| RA | 3,145,707 | C→T | intergenic (+38/‑157) | dnaG → / → rpoD | DNA primase/RNA polymerase sigma factor |
| JC JC | 3,570,938 | IS150 (+) +4 bp | coding (139‑142/435 nt) | uspA → | universal stress global response regulator |
| RA | 3,613,023 | A→C | intergenic (‑84/+99) | dctA ← / ← yhjK | C4‑dicarboxylate transport protein/predicted diguanylate cyclase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,911,972 | (T)7→8 | intergenic (‑173/‑150) | yifB ← / → ilvL | predicted bifunctional enzyme and transcriptional regulator/ilvG operon leader peptide |
| RA | 3,923,363 | G→A | P295P (CCG→CCA) | rep → | DNA helicase and single‑stranded DNA‑dependent ATPase |
| RA | 4,163,755 | T→C | L967P (CTC→CCC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |