Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A70 F1 I1 R1
|
18 |
48.6 |
3152226 |
95.8% |
3019832 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
2,362,391 |
+GGA |
coding (378/543 nt) |
yfcD ← |
predicted NUDIX hydrolase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2362388 | 1 (0.020) | 40 (0.850)
+GGA |
30/138 |
0.4 |
97.6% |
coding (381/543 nt) |
yfcD |
predicted NUDIX hydrolase |
| ? | REL606 |
2362389 = |
1 (0.020) | coding (380/543 nt) |
yfcD |
predicted NUDIX hydrolase |
CATCGCAGCGTGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2362315‑2362388
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTATCTTCGAAATAGAACTGCC > REL606/2362389‑2362458
|||
CATCGCAGCGTGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGG > 2:1208931/1‑76
CATCGCAGCGTGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGG > 2:332420/1‑76
CATCGCAGCGTGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGG < 1:1545629/76‑1
TCGCAGCGTGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAG < 1:84903/76‑1
CGCAGCGTGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGG > 1:1163826/1‑76
CGCAGCGTGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGG > 1:1141995/1‑76
CGCAGCGTGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGG > 2:465017/1‑76
CGCAGCGTGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGG > 1:1322399/1‑76
CAGCGTGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGAC > 1:509521/1‑76
AGCGTGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACC > 2:1518745/1‑76
TGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGA > 2:1229245/1‑76
CGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGA > 1:1271404/1‑76
ATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGC < 2:1130604/76‑1
ATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGC > 1:1225589/1‑76
CCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAA < 1:471325/76‑1
GGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACA > 2:437046/1‑76
GCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAA < 2:720864/76‑1
CGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAAa > 2:313613/1‑75
CGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAAC > 1:1165940/1‑76
CGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAAC < 2:1301963/76‑1
TCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGC < 1:1532003/76‑1
AGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCA < 1:572520/76‑1
AGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCA < 2:1521917/76‑1
AAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGAC < 1:1313542/76‑1
AAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGAC < 1:144829/76‑1
AAACTTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGAC < 1:1357137/76‑1
TTCACTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGATGCAGCTGAACAACGCGCCCCAGACACGG > 2:421866/1‑76
CTGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAAT > 2:202725/1‑76
TGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATT < 1:907451/76‑1
TGACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATT < 1:1471860/76‑1
GACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCACTTT > 1:509584/1‑76
GACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTT < 2:790555/76‑1
ACTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTT > 2:1155165/1‑76
CTTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTT < 1:37797/76‑1
TTCATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTA > 1:346772/1‑76
ATCTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTATCT < 2:887602/76‑1
CTTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTATCTTC > 2:1035429/1‑76
TTCCTGTAGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTATCTTCG < 2:1058808/76‑1
AGGGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTATCTTCGAAATAGA < 1:1492212/76‑1
GGCGAAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTATCTTCGAAATAGAAC > 1:1391876/1‑76
AAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTATCTTCGAAATAGAACTGCC > 2:1035010/1‑76
AAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTATCTTCGAAATAGAACTGCC > 2:393450/1‑76
AAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTATCTTCGAAATAGAACTGCC > 2:585495/1‑76
AAGGGAGGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTATCTTCGAAATAGAACTGCC > 2:600989/1‑76
AAGGGAGAACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTATCTTCGAAATAGAACTGCC > 1:49293/1‑76
|||
CATCGCAGCGTGCGGTGATTTCTTCCGGCGTCAGCCAGCAAACTTCACTGACTTCATCTTCCTGTAGGGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2362315‑2362388
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACCGTGAGAGACGCAGCTGAACAACGCGCCCCAGACACGGCAATTTTTATCTTCGAAATAGAACTGCC > REL606/2362389‑2362458
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
