mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 305,821 | T→G | Y268D (TAT→GAT) | yahA → | predicted DNA‑binding transcriptional regulator |
| JC | 475,145 | Δ13 bp | coding (149‑161/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| MC JC | 1,290,853 | Δ92 bp | coding (818‑909/1014 nt) | hnr → | response regulator of RpoS |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 1,882,907 | T→G | L148* (TTA→TGA) | manZ → | mannose‑specific enzyme IID component of PTS |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| JC | 2,362,391 | +GGA | coding (378/543 nt) | yfcD ← | predicted NUDIX hydrolase |
| RA | 2,478,071 | C→T | M173I (ATG→ATA) | yfeY ← | hypothetical protein |
| MC JC | 2,904,110 | (GTC)4→3 | coding (2297‑2299/3099 nt) | ygfK → | predicted oxidoreductase, Fe‑S subunit |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,842,808 | G→A | A428V (GCG→GTG) | dnaA ← | chromosomal replication initiation protein |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,928,383 | A→C | E56A (GAG→GCG) | rho → | transcription termination factor Rho |
| RA | 4,154,953 | T→A | intergenic (‑316/‑46) | coaA ← / → thrU | pantothenate kinase/tRNA‑Thr |
| RA | 4,163,896 | T→C | L1014P (CTG→CCG) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2037848 = | 51 (1.040) | 28 (0.620) | 13/140 | 2.4 | 29.5% | coding (283/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2038306 = | 86 (1.890) | coding (643/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | = 2680757 | 89 (1.820) | 20 (0.450) | 13/138 | 2.4 | 24.6% | coding (283/897 nt) | ECB_02511 | ParB family protein |
| ? | REL606 | = 2681225 | 41 (0.910) | coding (751/897 nt) | ECB_02511 | ParB family protein | |||||
| * | ? | REL606 | 4097350 = | 24 (0.490) | 59 (1.280) | 44/142 | 0.1 | 73.9% | coding (223/846 nt) | glpF | glycerol facilitator |
| ? | REL606 | = 4097374 | 19 (0.410) | coding (199/846 nt) | glpF | glycerol facilitator | |||||