mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 4,393,061 | 0 | T | G | 50.0% | 21.2 / 17.7 | 28 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 2,631,772 | 0 | A | C | 44.7% | 37.5 / 24.7 | 38 | intergenic (‑267/‑141) | rpoE/nadB | RNA polymerase, sigma 24 (sigma E) factor/L‑aspartate oxidase |
| * | REL606 | 1,132,851 | 0 | A | G | 44.4% | 41.9 / 12.3 | 36 | N65N (AAT→AAC) | yceI | hypothetical protein |
| * | REL606 | 2,568,967 | 0 | A | C | 42.1% | 52.1 / 11.8 | 38 | G1380G (GGT→GGG) | yfhM | hypothetical protein |
| * | REL606 | 3,492,082 | 0 | T | G | 39.1% | 72.2 / 18.9 | 46 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 1,484,105 | 0 | A | G | 37.0% | 32.7 / 15.0 | 27 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 2,448,098 | 0 | T | G | 34.9% | 73.7 / 13.0 | 43 | F278V (TTT→GTT) | nupC | nucleoside (except guanosine) transporter |
| * | REL606 | 1,688,990 | 0 | A | C | 33.3% | 84.9 / 10.9 | 39 | T92P (ACC→CCC) | nth | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) |
| * | REL606 | 2,296,329 | 0 | A | C | 31.2% | 99.3 / 15.9 | 48 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,747,903 | 0 | G | T | 30.4% | 112.9 / 44.8 | 56 | A8S (GCA→TCA) | ydiL | hypothetical protein |
| * | REL606 | 1,875,483 | 0 | G | C | 27.3% | 197.3 / 72.5 | 88 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| Marginal new junction evidence (lowest skew 10 of 190 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 797805 = | 63 (1.290) | 15 (0.330) | 12/140 | 2.6 | 19.3% | coding (1051/1338 nt) | ECB_00738 | hypothetical protein |
| ? | REL606 | 798250 = | 67 (1.470) | coding (1026/1146 nt) | ECB_00739 | hypothetical protein | |||||
| * | ? | REL606 | 2041054 = | 66 (1.350) | 17 (0.380) | 10/136 | 3.0 | 17.5% | coding (330/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041468 = | 100 (2.260) | coding (1353/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2041190 = | 31 (0.630) | 15 (0.340) | 9/134 | 3.2 | 22.8% | coding (194/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041690 = | 74 (1.700) | coding (1131/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | = 3737092 | 86 (1.760) | 10 (0.220) | 9/138 | 3.3 | 14.1% | coding (735/1254 nt) | waaL | Lipid A‑core, surface polymer ligase |
| ? | REL606 | = 3737547 | 43 (0.960) | coding (280/1254 nt) | waaL | Lipid A‑core, surface polymer ligase | |||||
| * | ? | REL606 | 2039076 = | 24 (0.490) | 17 (0.380) | 9/136 | 3.3 | 20.2% | coding (619/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | 2039562 = | 113 (2.560) | coding (133/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | 3026726 = | 74 (1.520) | 17 (0.370) | 9/140 | 3.4 | 19.2% | coding (77/1377 nt) | ECB_02826 | hypothetical protein |
| ? | REL606 | 3027253 = | 74 (1.630) | coding (418/660 nt) | ECB_02827 | Polysialic acid transport ATP‑binding KpsT | |||||
| * | ? | REL606 | = 3739027 | 69 (1.410) | 12 (0.270) | 8/138 | 3.6 | 16.6% | coding (939/1026 nt) | waaW | UDP‑galactose:(Galactosyl) LPS alpha1,2‑galactosyltransferase |
| ? | REL606 | = 3739515 | 57 (1.270) | coding (451/1026 nt) | waaW | UDP‑galactose:(Galactosyl) LPS alpha1,2‑galactosyltransferase | |||||
| * | ? | REL606 | 3022392 = | 45 (0.920) | 14 (0.320) | 8/136 | 3.6 | 18.8% | coding (293/1140 nt) | ECB_02821 | hypothetical protein |
| ? | REL606 | 3022865 = | 80 (1.810) | intergenic (‑181/+393) | ECB_02821/ECB_02822 | hypothetical protein/bifunctional Ribulose 5‑phosphate reductase/CDP‑ribitol pyrophosphorylase | |||||
| * | ? | REL606 | = 3563797 | 80 (1.640) | 12 (0.270) | 7/136 | 3.9 | 15.4% | coding (1351/1608 nt) | yhiKL | hypothetical protein |
| ? | REL606 | = 3564236 | 59 (1.330) | coding (912/1608 nt) | yhiKL | hypothetical protein | |||||
| * | ? | REL606 | = 2114124 | 61 (1.250) | 11 (0.250) | 7/134 | 3.9 | 19.8% | coding (550/1968 nt) | ECB_02001 | hypothetical protein |
| ? | REL606 | = 2114622 | 35 (0.800) | coding (52/1968 nt) | ECB_02001 | hypothetical protein | |||||