Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A86 F1 I1 R1
|
15 |
50.6 |
3276358 |
95.9% |
3142027 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,145,822 |
C→A |
intergenic (+153/‑42) |
dnaG → / → rpoD |
DNA primase/RNA polymerase sigma factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,145,822 | 0 | C | A | 100.0%
| 227.7
/ NA
| 57 | intergenic (+153/‑42) | dnaG/rpoD | DNA primase/RNA polymerase sigma factor |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (28/29); total (28/29) |
CTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAA > REL606/3145752‑3145892
|
cTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCa < 1:292257/76‑1 (MQ=255)
tCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCaa < 2:1057153/76‑1 (MQ=255)
tCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCaa < 2:56140/76‑1 (MQ=255)
gTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAaca < 2:797576/76‑1 (MQ=255)
gTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAaca < 1:209229/76‑1 (MQ=255)
tAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCCATAGCCCAacac > 2:570198/1‑76 (MQ=255)
tAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAacac > 2:720076/1‑76 (MQ=255)
aTTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCa > 1:1584576/1‑76 (MQ=255)
aTTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCa < 1:492884/76‑1 (MQ=255)
ttATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCaa > 2:1047471/1‑76 (MQ=255)
ttATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCaa < 2:1201521/76‑1 (MQ=255)
ttATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCaa > 1:167456/1‑76 (MQ=255)
tATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGGCAATAGCCCAACACCAAc > 1:692784/1‑76 (MQ=255)
aTCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAAcc > 2:224159/1‑76 (MQ=255)
tCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCt < 2:1166664/76‑1 (MQ=255)
cGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTc < 2:71579/76‑1 (MQ=255)
gTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCCACCTCa > 2:395315/1‑76 (MQ=255)
ttGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCAt < 1:1298911/76‑1 (MQ=255)
tGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATg > 1:1611997/1‑76 (MQ=255)
cGGTATACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGaaa < 2:1636762/76‑1 (MQ=255)
ggTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGaaaa > 1:607103/1‑75 (MQ=255)
ggTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAAt < 1:746747/76‑1 (MQ=255)
tAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATaa > 2:1537528/1‑76 (MQ=255)
aaaCAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAg < 1:225576/76‑1 (MQ=255)
aaaCAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAg < 1:1498669/76‑1 (MQ=255)
aacaacCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAgt > 2:1598062/1‑76 (MQ=255)
acaacCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAgtg > 1:733005/1‑76 (MQ=255)
cGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGAt > 1:158112/1‑76 (MQ=255)
cGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGAt < 1:588609/76‑1 (MQ=255)
gTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATa < 2:832971/76‑1 (MQ=255)
ttGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATAc < 1:278549/76‑1 (MQ=255)
tGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATAcc < 2:765692/76‑1 (MQ=255)
gATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGt < 2:19884/76‑1 (MQ=255)
tttCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCt < 2:582752/76‑1 (MQ=255)
ttCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCtt < 2:1103035/76‑1 (MQ=255)
ttCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCtt > 1:402538/1‑76 (MQ=255)
tCAGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTa > 2:1411709/1‑76 (MQ=255)
aGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATg > 1:84492/1‑76 (MQ=255)
aGCGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATg < 1:1566641/76‑1 (MQ=255)
cGTTAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGa > 1:1057237/1‑76 (MQ=255)
ttAACGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGc > 1:496731/1‑76 (MQ=255)
naaCGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCa > 1:278990/2‑76 (MQ=255)
cGGCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCaaaa < 1:1311702/76‑1 (MQ=255)
ggCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAAc < 2:1092725/76‑1 (MQ=255)
gCTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAAcc > 2:919713/1‑76 (MQ=255)
cTGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAAccc > 1:491375/1‑76 (MQ=255)
tGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCg > 2:940666/1‑76 (MQ=255)
tGAAGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCg > 1:1132924/1‑76 (MQ=255)
aaGGACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCa > 2:608748/1‑76 (MQ=255)
ggACATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGt < 2:1255904/76‑1 (MQ=255)
aCATCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTca > 2:1110421/1‑76 (MQ=255)
aTCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTcaca > 2:371444/1‑76 (MQ=255)
aTCGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTcaca < 2:805059/76‑1 (MQ=255)
cGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGc < 2:655657/76‑1 (MQ=255)
cGGGTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGc < 1:566821/76‑1 (MQ=255)
gggTCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCt < 2:1398905/76‑1 (MQ=255)
tCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGaa > 2:1394891/1‑76 (MQ=255)
tCAATAGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGaa > 1:83710/1‑76 (MQ=255)
|
CTCGTAATTATCGTTGGCGGTAAACAACCGTTGGATTTCAGCGTTAACGGCTGAAGGACATCGGGTCAATCGCCCAACACCAACCTCATGAAATAAGTGTGGATACCGTCTTATGGAGCAAAACCCGCAGTCACAGCTGAA > REL606/3145752‑3145892
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
