breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	433,771	2 bp→AC	coding (266‑267/273 nt)	hupB →	HU, DNA‑binding transcriptional regulator, beta subunit
RA	783,391	G→A	G292G (GGG→GGA)	ybhI →	predicted transporter
RA	1,329,516	C→T	H33Y (CAC→TAC)	topA →	DNA topoisomerase I
JC	1,733,297	(CGTATGAA)1→2	coding (333/1413 nt)	pykF →	pyruvate kinase
RA	2,193,779	G→T	L143I (CTT→ATT)	yeiB ←	conserved inner membrane protein
JC JC	3,013,368	IS150 (–) +3 bp	intergenic (+32/‑50)	ECB_02814 → / → ECB_02815	conserved hypothetical protein/Capsule polysaccharide export inner‑membrane protein kpsE
RA	3,145,822	C→A	intergenic (+153/‑42)	dnaG → / → rpoD	DNA primase/RNA polymerase sigma factor
RA	3,328,101	A→G	L293P (CTC→CCC)	mreB ←	cell wall structural complex MreBCD, actin‑like component MreB
RA	3,346,924	G→A	intergenic (+422/‑117)	yhdV → / → yhdW	predicted outer membrane protein/predicted amino‑acid transporter subunit
RA	3,762,741	A→T	K662I (AAA→ATA)	spoT →	bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA	3,875,632	(T)7→8	intergenic (‑66/+287)	glmU ← / ← atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
MC JC	3,894,997	Δ6,934 bp	IS150‑mediated	rbsD–[yieO]	rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]
RA	4,164,097	C→T	P1081L (CCG→CTG)	rpoB →	DNA‑directed RNA polymerase subunit beta
JC	4,347,649	Δ42 bp	coding (265‑306/477 nt)	fxsA →	inner membrane protein
JC JC	4,524,522	IS186 (+) +6 bp	coding (494‑499/549 nt)	fimA →	major type 1 subunit fimbrin (pilin)